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PMC:3585731 / 4778-4887 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T811 64-68 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1685 103-108 NN denotes cells
T1684 98-102 NN denotes L929
T1683 95-97 IN denotes in
T1682 84-94 NN denotes activation
T1681 80-83 NN denotes JNK
T1680 76-79 CC denotes and
T1679 69-75 NN denotes kinase
T1678 64-68 NN denotes RIP1
T1677 56-63 IN denotes between
T1676 51-55 NN denotes link
T1675 42-50 JJ denotes critical
T1674 40-41 DT denotes a
T1673 37-39 IN denotes as
T1672 30-36 VB denotes serves
T1671 22-29 NN denotes pathway
T1670 18-21 NN denotes Akt
T1669 14-17 DT denotes the
T1668 9-13 IN denotes that
T1667 3-8 VB denotes found
T1666 0-2 PRP denotes We
R1116 T1666 T1667 arg1Of We,found
R1117 T1671 T1669 arg1Of pathway,the
R1118 T1671 T1670 arg1Of pathway,Akt
R1119 T1671 T1672 arg1Of pathway,serves
R1120 T1672 T1667 arg2Of serves,found
R1121 T1672 T1668 arg1Of serves,that
R1122 T1672 T1673 arg1Of serves,as
R1123 T1676 T1673 arg2Of link,as
R1124 T1676 T1674 arg1Of link,a
R1125 T1676 T1675 arg1Of link,critical
R1126 T1676 T1677 arg1Of link,between
R1127 T1679 T1678 arg1Of kinase,RIP1
R1128 T1679 T1680 arg1Of kinase,and
R1129 T1680 T1677 arg2Of and,between
R1130 T1680 T1683 arg1Of and,in
R1131 T1682 T1680 arg2Of activation,and
R1132 T1682 T1681 arg1Of activation,JNK
R1133 T1685 T1683 arg2Of cells,in
R1134 T1685 T1684 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T948 64-68 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1840 18-21 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1829 18-21 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1818 18-21 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1804 64-68 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T1035 80-83 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T1054 80-83 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T899 0-109 Sentence denotes We found that the Akt pathway serves as a critical link between RIP1 kinase and JNK activation in L929 cells.
T33 0-109 Sentence denotes We found that the Akt pathway serves as a critical link between RIP1 kinase and JNK activation in L929 cells.

simple1

Id Subject Object Predicate Lexical cue
T1082 64-68 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1766 64-68 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2138 64-68 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T1898 84-94 Positive_regulation denotes activation
T1885 64-68 Protein denotes RIP1
R1220 T1885 T1898 themeOf RIP1,activation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2808 80-108 Positive_regulation denotes JNK activation in L929 cells
T2752 80-83 Protein denotes JNK
T2749 14-29 Protein denotes the Akt pathway
T2743 64-68 Protein denotes RIP1
T2727 64-75 Protein denotes RIP1 kinase
R1964 T2752 T2808 themeOf JNK,JNK activation in L929 cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2606 108-109 . denotes .
T2605 103-108 NNS denotes cells
T2604 98-102 CD denotes L929
T2603 95-97 IN denotes in
T2602 84-94 NN denotes activation
T2601 80-83 NNP denotes JNK
T2600 76-79 CC denotes and
T2599 69-75 NN denotes kinase
T2598 64-68 CD denotes RIP1
T2597 56-63 IN denotes between
T2596 51-55 NN denotes link
T2595 42-50 JJ denotes critical
T2594 40-41 DT denotes a
T2593 37-39 IN denotes as
T2592 30-36 VBZ denotes serves
T2591 22-29 NN denotes pathway
T2590 18-21 NNP denotes Akt
T2589 14-17 DT denotes the
T2588 9-13 IN denotes that
T2587 3-8 VBD denotes found
T2586 0-2 PRP denotes We
R1817 T2598 T2599 nummod RIP1,kinase
R1820 T2599 T2597 pobj kinase,between
R1824 T2600 T2599 cc and,kinase
R1828 T2601 T2602 compound JNK,activation
R1831 T2602 T2599 conj activation,kinase
R1835 T2603 T2602 prep in,activation
R1839 T2604 T2605 nummod L929,cells
R1843 T2605 T2603 pobj cells,in
R1847 T2606 T2587 punct .,found
R1879 T2586 T2587 nsubj We,found
R1880 T2587 T2587 ROOT found,found
R1882 T2588 T2592 mark that,serves
R1883 T2589 T2591 det the,pathway
R1885 T2590 T2591 compound Akt,pathway
R1886 T2591 T2592 nsubj pathway,serves
R1887 T2592 T2587 ccomp serves,found
R1889 T2593 T2592 prep as,serves
R1890 T2594 T2596 det a,link
R1891 T2595 T2596 amod critical,link
R1893 T2596 T2593 pobj link,as
R1894 T2597 T2596 prep between,link

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2201 84-94 Positive_regulation denotes activation
T2200 80-83 Protein denotes JNK
T2199 64-75 Protein denotes RIP1 kinase
T2198 18-21 Protein denotes Akt
R1486 T2200 T2201 themeOf JNK,activation

test3

Id Subject Object Predicate Lexical cue
T842 64-68 Protein denotes RIP1
T870 64-68 Protein denotes RIP1