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PMC:3585731 / 47553-47777 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T20798 152-161 Gene_expression denotes synthesis
T20797 135-143 Positive_regulation denotes increase
T20796 45-54 Negative_regulation denotes deficient
T20751 147-151 Protein denotes TNFα
T20750 40-44 Protein denotes FADD
R13918 T20750 T20796 themeOf FADD,deficient
R13919 T20751 T20798 themeOf TNFα,synthesis
R13930 T20796 T20797 causeOf deficient,increase
R13931 T20798 T20797 themeOf synthesis,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22352 218-223 NN denotes cells
T22351 213-217 NN denotes L929
T22350 210-212 IN denotes in
T22349 205-209 NN denotes role
T22348 201-204 PRP-DOLLAR- denotes its
T22347 194-200 IN denotes unlike
T22346 192-193 -COMMA- denotes ,
T22345 190-192 FW denotes se
T22344 186-189 FW denotes per
T22343 180-185 NN denotes death
T22342 175-179 NN denotes cell
T22341 170-174 IN denotes than
T22340 163-169 RB denotes rather
T22339 161-162 -COMMA- denotes ,
T22338 152-161 NN denotes synthesis
T22337 147-151 NN denotes TNFα
T22336 144-146 IN denotes in
T22335 135-143 NN denotes increase
T22334 132-134 DT denotes an
T22333 129-131 TO denotes to
T22332 117-128 RB denotes prominently
T22331 112-116 RB denotes more
T22330 100-111 VB denotes contributed
T22329 90-99 NN denotes signaling
T22328 86-89 NN denotes Akt
T22327 84-85 -COMMA- denotes ,
T22326 73-84 NN denotes macrophages
T22325 69-72 CC denotes and
T22324 67-68 -COMMA- denotes ,
T22323 62-67 NN denotes cells
T22322 55-61 NN denotes Jurkat
T22321 40-54 JJ denotes FADD-deficient
T22320 38-39 -COMMA- denotes ,
T22319 27-38 NN denotes fibroblasts
T22318 22-26 NN denotes lung
T22317 16-21 NN denotes mouse
T22316 13-15 IN denotes in
T22315 11-12 -COMMA- denotes ,
T22314 0-11 RB denotes Importantly
R14976 T22319 T22317 arg1Of fibroblasts,mouse
R14977 T22319 T22318 arg1Of fibroblasts,lung
R14978 T22319 T22320 arg1Of fibroblasts,","
R14979 T22320 T22325 arg1Of ",",and
R14980 T22323 T22320 arg2Of cells,","
R14981 T22323 T22321 arg1Of cells,FADD-deficient
R14982 T22323 T22322 arg1Of cells,Jurkat
R14983 T22325 T22316 arg2Of and,in
R14984 T22325 T22324 arg1Of and,","
R14985 T22326 T22325 arg2Of macrophages,and
R14986 T22329 T22328 arg1Of signaling,Akt
R14987 T22329 T22330 arg1Of signaling,contributed
R14988 T22330 T22314 arg1Of contributed,Importantly
R14989 T22330 T22315 arg1Of contributed,","
R14990 T22330 T22316 arg1Of contributed,in
R14991 T22330 T22327 arg1Of contributed,","
R14992 T22330 T22332 arg1Of contributed,prominently
R14993 T22330 T22333 arg1Of contributed,to
R14994 T22330 T22345 arg1Of contributed,se
R14995 T22330 T22346 arg1Of contributed,","
R14996 T22330 T22347 arg1Of contributed,unlike
R14997 T22332 T22331 arg1Of prominently,more
R14998 T22335 T22334 arg1Of increase,an
R14999 T22335 T22336 arg1Of increase,in
R15000 T22335 T22341 arg1Of increase,than
R15001 T22338 T22336 arg2Of synthesis,in
R15002 T22338 T22337 arg1Of synthesis,TNFα
R15003 T22341 T22333 arg2Of than,to
R15004 T22341 T22339 arg1Of than,","
R15005 T22341 T22340 arg1Of than,rather
R15006 T22343 T22341 arg2Of death,than
R15007 T22343 T22342 arg1Of death,cell
R15008 T22345 T22344 arg1Of se,per
R15009 T22349 T22347 arg2Of role,unlike
R15010 T22349 T22348 arg1Of role,its
R15011 T22349 T22350 arg1Of role,in
R15012 T22352 T22350 arg2Of cells,in
R15013 T22352 T22351 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21078 147-151 Protein denotes TNFα
T21077 40-44 Protein denotes FADD

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22942 147-151 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T22915 86-89 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22881 86-89 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22847 86-89 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T20931 22-26 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T21191 180-185 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T21174 175-185 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T21165 152-161 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T21099 90-99 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T21285 218-223 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T21284 62-67 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T20972 0-224 Sentence denotes Importantly, in mouse lung fibroblasts, FADD-deficient Jurkat cells, and macrophages, Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death per se, unlike its role in L929 cells.
T297 0-224 Sentence denotes Importantly, in mouse lung fibroblasts, FADD-deficient Jurkat cells, and macrophages, Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death per se, unlike its role in L929 cells.

simple1

Id Subject Object Predicate Lexical cue
T21330 147-151 Protein denotes TNFα
T21329 40-44 Protein denotes FADD

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22777 147-151 Protein denotes TNFα
T22805 45-54 Negative_regulation denotes deficient
T22804 152-161 Gene_expression denotes synthesis
T22803 135-143 Positive_regulation denotes increase
T22776 40-44 Protein denotes FADD
R15389 T22776 T22805 themeOf FADD,deficient
R15390 T22777 T22804 themeOf TNFα,synthesis
R15402 T22804 T22803 themeOf synthesis,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23108 147-151 Protein denotes TNFα
T23107 40-44 Protein denotes FADD
T23136 152-161 Gene_expression denotes synthesis
T23135 45-54 Negative_regulation denotes deficient
T23134 135-143 Positive_regulation denotes increase
R15466 T23107 T23135 themeOf FADD,deficient
R15467 T23108 T23136 themeOf TNFα,synthesis
R15477 T23136 T23134 themeOf synthesis,increase

DLUT931

Id Subject Object Predicate Lexical cue
T23015 135-143 Positive_regulation denotes increase
T23014 152-161 Gene_expression denotes synthesis
T23013 45-54 Negative_regulation denotes deficient
T22978 147-151 Protein denotes TNFα
T22977 40-44 Protein denotes FADD
R15439 T23014 T23015 themeOf synthesis,increase
R15422 T22977 T23013 themeOf FADD,deficient
R15423 T22978 T23014 themeOf TNFα,synthesis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23592 73-85 Entity denotes macrophages,
T23584 16-38 Entity denotes mouse lung fibroblasts
T23549 144-161 Protein denotes in TNFα synthesis
T23524 40-67 Entity denotes FADD-deficient Jurkat cells
T23636 86-185 Positive_regulation denotes Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death
T23616 190-223 Entity denotes se, unlike its role in L929 cells
T23603 86-89 Protein denotes Akt
R15675 T23603 T23636 causeOf Akt,"Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24667 22-26 NN denotes lung
T24666 16-21 NN denotes mouse
T24665 13-15 IN denotes in
T24664 11-12 , denotes ,
T24663 0-11 RB denotes Importantly
T24702 223-224 . denotes .
T24701 218-223 NNS denotes cells
T24700 213-217 CD denotes L929
T24699 210-212 IN denotes in
T24698 205-209 NN denotes role
T24697 201-204 PRP$ denotes its
T24696 194-200 IN denotes unlike
T24695 192-193 , denotes ,
T24694 190-192 FW denotes se
T24693 186-189 IN denotes per
T24692 180-185 NN denotes death
T24691 175-179 NN denotes cell
T24690 170-174 IN denotes than
T24689 163-169 RB denotes rather
T24688 161-162 , denotes ,
T24687 152-161 NN denotes synthesis
T24686 147-151 NNP denotes TNFα
T24685 144-146 IN denotes in
T24684 135-143 NN denotes increase
T24683 132-134 DT denotes an
T24682 129-131 TO denotes to
T24681 117-128 RB denotes prominently
T24680 112-116 JJR denotes more
T24679 100-111 VBD denotes contributed
T24678 90-99 VBG denotes signaling
T24677 86-89 NNP denotes Akt
T24676 84-85 , denotes ,
T24675 73-84 NNS denotes macrophages
T24674 69-72 CC denotes and
T24673 67-68 , denotes ,
T24672 62-67 NNS denotes cells
T24671 55-61 NNP denotes Jurkat
T24670 40-54 JJ denotes FADD-deficient
T24669 38-39 , denotes ,
T24668 27-38 NNS denotes fibroblasts
R16676 T24663 T24679 advmod Importantly,contributed
R16679 T24664 T24679 punct ",",contributed
R16683 T24665 T24679 prep in,contributed
R16688 T24666 T24668 compound mouse,fibroblasts
R16693 T24667 T24668 compound lung,fibroblasts
R16696 T24668 T24665 pobj fibroblasts,in
R16698 T24669 T24668 punct ",",fibroblasts
R16699 T24670 T24672 amod FADD-deficient,cells
R16700 T24671 T24672 compound Jurkat,cells
R16701 T24672 T24668 conj cells,fibroblasts
R16705 T24673 T24672 punct ",",cells
R16709 T24674 T24672 cc and,cells
R16712 T24675 T24672 conj macrophages,cells
R16715 T24676 T24679 punct ",",contributed
R16719 T24677 T24678 compound Akt,signaling
R16723 T24678 T24679 nsubj signaling,contributed
R16727 T24679 T24679 ROOT contributed,contributed
R16728 T24680 T24681 advmod more,prominently
R16731 T24681 T24679 advmod prominently,contributed
R16735 T24682 T24681 prep to,prominently
R16739 T24683 T24684 det an,increase
R16742 T24684 T24682 pobj increase,to
R16747 T24685 T24684 prep in,increase
R16750 T24686 T24687 compound TNFα,synthesis
R16755 T24687 T24685 pobj synthesis,in
R16756 T24688 T24684 punct ",",increase
R16759 T24689 T24690 advmod rather,than
R16762 T24690 T24684 cc than,increase
R16766 T24691 T24692 compound cell,death
R16769 T24692 T24684 conj death,increase
R16772 T24693 T24694 advmod per,se
R16776 T24694 T24679 npadvmod se,contributed
R16779 T24695 T24679 punct ",",contributed
R16786 T24696 T24679 prep unlike,contributed
R16790 T24697 T24698 poss its,role
R16793 T24698 T24696 pobj role,unlike
R16798 T24699 T24698 prep in,role
R16802 T24700 T24701 nummod L929,cells
R16805 T24701 T24699 pobj cells,in
R16809 T24702 T24679 punct .,contributed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23280 135-143 Positive_regulation denotes increase
T23279 152-161 Gene_expression denotes synthesis
T23278 45-54 Negative_regulation denotes deficient
T23277 147-151 Protein denotes TNFα
T23276 86-89 Protein denotes Akt
T23275 40-44 Protein denotes FADD
R15543 T23275 T23278 themeOf FADD,deficient
R15544 T23277 T23279 themeOf TNFα,synthesis
R15545 T23279 T23280 themeOf synthesis,increase

test3

Id Subject Object Predicate Lexical cue
T20907 152-161 Gene_expression denotes synthesis
T20906 147-151 Protein denotes TNFα
T20905 135-143 Positive_regulation denotes increase
T20904 45-54 Negative_regulation denotes deficient
T20903 40-44 Protein denotes FADD
T20833 147-151 Protein denotes TNFα
T20832 40-44 Protein denotes FADD
R13948 T20903 T20904 themeOf FADD,deficient
R13949 T20906 T20907 themeOf TNFα,synthesis
R13950 T20907 T20905 themeOf synthesis,increase