> top > docs > PMC:3585731 > spans > 47307-48162 > annotations

PMC:3585731 / 47307-48162 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T20800 600-610 Gene_expression denotes production
T20799 586-595 Positive_regulation denotes mediating
T20798 398-407 Gene_expression denotes synthesis
T20797 381-389 Positive_regulation denotes increase
T20796 291-300 Negative_regulation denotes deficient
T20753 614-618 Protein denotes TNFα
T20752 554-558 Protein denotes RIP1
T20751 393-397 Protein denotes TNFα
T20750 286-290 Protein denotes FADD
T20749 36-40 Protein denotes RIP1
R13918 T20750 T20796 themeOf FADD,deficient
R13919 T20751 T20798 themeOf TNFα,synthesis
R13920 T20752 T20799 causeOf RIP1,mediating
R13921 T20753 T20800 themeOf TNFα,production
R13930 T20796 T20797 causeOf deficient,increase
R13931 T20798 T20797 themeOf synthesis,increase
R13932 T20800 T20799 themeOf production,mediating

2_test

Id Subject Object Predicate Lexical cue
23469174-22695613-90505472 487-489 22695613 denotes 15
23469174-21921917-90505473 841-842 21921917 denotes 5
23469174-22195746-90505474 846-847 22195746 denotes 6
23469174-19109899-90505475 851-853 19109899 denotes 10

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22421 853-854 -RRB- denotes ]
T22420 851-853 CD denotes 10
T22419 850-851 -LRB- denotes [
T22418 848-849 -COMMA- denotes ,
T22417 847-848 -RRB- denotes ]
T22416 846-847 CD denotes 6
T22415 845-846 -LRB- denotes [
T22414 843-844 -COMMA- denotes ,
T22413 842-843 -RRB- denotes ]
T22412 841-842 CD denotes 5
T22411 840-841 -LRB- denotes [
T22410 831-839 NN denotes necrosis
T22409 821-830 VB denotes regulated
T22408 818-820 IN denotes of
T22407 813-817 NN denotes form
T22406 808-812 DT denotes this
T22405 795-807 VB denotes accompanying
T22404 782-794 RB denotes specifically
T22403 780-781 -COMMA- denotes ,
T22402 771-780 NN denotes signaling
T22401 758-770 JJ denotes inflammatory
T22400 748-757 VB denotes increased
T22399 745-747 TO denotes to
T22398 741-744 NN denotes Akt
T22397 738-740 IN denotes of
T22396 725-737 NN denotes contribution
T22395 719-724 JJ denotes major
T22394 715-718 DT denotes the
T22393 705-714 VB denotes highlight
T22392 701-704 CC denotes and
T22391 690-700 NN denotes mechanisms
T22390 680-689 NN denotes signaling
T22389 668-679 JJ denotes necroptotic
T22388 665-667 IN denotes of
T22387 654-664 NN denotes complexity
T22386 645-653 VB denotes emerging
T22385 641-644 DT denotes the
T22384 631-640 VB denotes emphasize
T22383 626-630 NN denotes data
T22382 620-625 DT denotes These
T22381 614-618 NN denotes TNFα
T22380 611-613 IN denotes of
T22379 600-610 NN denotes production
T22378 596-599 DT denotes the
T22377 586-595 VB denotes mediating
T22376 583-585 IN denotes in
T22375 578-582 NN denotes role
T22374 568-577 JJ denotes important
T22373 565-567 DT denotes an
T22372 559-564 VB denotes plays
T22371 554-558 NN denotes RIP1
T22370 552-553 -COMMA- denotes ,
T22369 541-552 NN denotes necroptosis
T22368 538-540 IN denotes in
T22367 533-537 NN denotes role
T22366 529-532 PRP-DOLLAR- denotes its
T22365 526-528 TO denotes to
T22364 517-525 NN denotes addition
T22363 514-516 IN denotes in
T22362 512-513 -COMMA- denotes ,
T22361 508-512 IN denotes that
T22360 495-507 VB denotes demonstrated
T22359 491-494 VB denotes has
T22358 489-490 -RRB- denotes ]
T22357 487-489 CD denotes 15
T22356 486-487 -LRB- denotes [
T22355 480-485 NN denotes study
T22354 473-479 JJ denotes recent
T22353 471-472 DT denotes A
T22352 464-469 NN denotes cells
T22351 459-463 NN denotes L929
T22350 456-458 IN denotes in
T22349 451-455 NN denotes role
T22348 447-450 PRP-DOLLAR- denotes its
T22347 440-446 IN denotes unlike
T22346 438-439 -COMMA- denotes ,
T22345 436-438 FW denotes se
T22344 432-435 FW denotes per
T22343 426-431 NN denotes death
T22342 421-425 NN denotes cell
T22341 416-420 IN denotes than
T22340 409-415 RB denotes rather
T22339 407-408 -COMMA- denotes ,
T22338 398-407 NN denotes synthesis
T22337 393-397 NN denotes TNFα
T22336 390-392 IN denotes in
T22335 381-389 NN denotes increase
T22334 378-380 DT denotes an
T22333 375-377 TO denotes to
T22332 363-374 RB denotes prominently
T22331 358-362 RB denotes more
T22330 346-357 VB denotes contributed
T22329 336-345 NN denotes signaling
T22328 332-335 NN denotes Akt
T22327 330-331 -COMMA- denotes ,
T22326 319-330 NN denotes macrophages
T22325 315-318 CC denotes and
T22324 313-314 -COMMA- denotes ,
T22323 308-313 NN denotes cells
T22322 301-307 NN denotes Jurkat
T22321 286-300 JJ denotes FADD-deficient
T22320 284-285 -COMMA- denotes ,
T22319 273-284 NN denotes fibroblasts
T22318 268-272 NN denotes lung
T22317 262-267 NN denotes mouse
T22316 259-261 IN denotes in
T22315 257-258 -COMMA- denotes ,
T22314 246-257 RB denotes Importantly
T22313 237-244 NN denotes fashion
T22312 228-236 JJ denotes specific
T22311 223-227 NN denotes type
T22310 218-222 NN denotes cell
T22309 216-217 DT denotes a
T22308 213-215 IN denotes in
T22307 206-212 VB denotes varies
T22306 195-205 NN denotes connection
T22305 190-194 DT denotes this
T22304 187-189 IN denotes of
T22303 174-186 NN denotes significance
T22302 170-173 DT denotes the
T22301 168-169 -COMMA- denotes ,
T22300 164-168 NN denotes time
T22299 159-163 JJ denotes same
T22298 155-158 DT denotes the
T22297 152-154 IN denotes At
T22296 145-150 NN denotes types
T22295 140-144 NN denotes cell
T22294 131-139 JJ denotes multiple
T22293 128-130 IN denotes in
T22292 119-127 VB denotes observed
T22291 116-118 VB denotes is
T22290 111-115 WDT denotes that
T22289 101-110 NN denotes signaling
T22288 89-100 JJ denotes necroptotic
T22287 86-88 IN denotes of
T22286 78-85 NN denotes feature
T22285 70-77 JJ denotes general
T22284 68-69 DT denotes a
T22283 65-67 VB denotes is
T22282 61-64 NN denotes Akt
T22281 58-60 TO denotes to
T22280 48-57 NN denotes signaling
T22279 41-47 NN denotes kinase
T22278 36-40 NN denotes RIP1
T22277 31-35 IN denotes that
T22276 22-30 VB denotes revealed
T22275 17-21 NN denotes data
T22274 13-16 PRP-DOLLAR- denotes our
T22273 11-12 -COMMA- denotes ,
T22272 0-11 RB denotes Importantly
R14935 T22275 T22274 arg1Of data,our
R14936 T22275 T22276 arg1Of data,revealed
R14937 T22276 T22272 arg1Of revealed,Importantly
R14938 T22276 T22273 arg1Of revealed,","
R14939 T22280 T22278 arg1Of signaling,RIP1
R14940 T22280 T22279 arg1Of signaling,kinase
R14941 T22280 T22281 arg1Of signaling,to
R14942 T22280 T22283 arg1Of signaling,is
R14943 T22282 T22281 arg2Of Akt,to
R14944 T22283 T22276 arg2Of is,revealed
R14945 T22283 T22277 arg1Of is,that
R14946 T22286 T22283 arg2Of feature,is
R14947 T22286 T22284 arg1Of feature,a
R14948 T22286 T22285 arg1Of feature,general
R14949 T22286 T22287 arg1Of feature,of
R14950 T22286 T22290 arg1Of feature,that
R14951 T22286 T22291 arg1Of feature,is
R14952 T22286 T22292 arg2Of feature,observed
R14953 T22289 T22287 arg2Of signaling,of
R14954 T22289 T22288 arg1Of signaling,necroptotic
R14955 T22292 T22291 arg2Of observed,is
R14956 T22292 T22293 arg1Of observed,in
R14957 T22296 T22293 arg2Of types,in
R14958 T22296 T22294 arg1Of types,multiple
R14959 T22296 T22295 arg1Of types,cell
R14960 T22300 T22297 arg2Of time,At
R14961 T22300 T22298 arg1Of time,the
R14962 T22300 T22299 arg1Of time,same
R14963 T22303 T22302 arg1Of significance,the
R14964 T22303 T22304 arg1Of significance,of
R14965 T22303 T22307 arg1Of significance,varies
R14966 T22306 T22304 arg2Of connection,of
R14967 T22306 T22305 arg1Of connection,this
R14968 T22307 T22297 arg1Of varies,At
R14969 T22307 T22301 arg1Of varies,","
R14970 T22307 T22308 arg1Of varies,in
R14971 T22313 T22308 arg2Of fashion,in
R14972 T22313 T22309 arg1Of fashion,a
R14973 T22313 T22310 arg1Of fashion,cell
R14974 T22313 T22311 arg1Of fashion,type
R14975 T22313 T22312 arg1Of fashion,specific
R14976 T22319 T22317 arg1Of fibroblasts,mouse
R14977 T22319 T22318 arg1Of fibroblasts,lung
R14978 T22319 T22320 arg1Of fibroblasts,","
R14979 T22320 T22325 arg1Of ",",and
R14980 T22323 T22320 arg2Of cells,","
R14981 T22323 T22321 arg1Of cells,FADD-deficient
R14982 T22323 T22322 arg1Of cells,Jurkat
R14983 T22325 T22316 arg2Of and,in
R14984 T22325 T22324 arg1Of and,","
R14985 T22326 T22325 arg2Of macrophages,and
R14986 T22329 T22328 arg1Of signaling,Akt
R14987 T22329 T22330 arg1Of signaling,contributed
R14988 T22330 T22314 arg1Of contributed,Importantly
R14989 T22330 T22315 arg1Of contributed,","
R14990 T22330 T22316 arg1Of contributed,in
R14991 T22330 T22327 arg1Of contributed,","
R14992 T22330 T22332 arg1Of contributed,prominently
R14993 T22330 T22333 arg1Of contributed,to
R14994 T22330 T22345 arg1Of contributed,se
R14995 T22330 T22346 arg1Of contributed,","
R14996 T22330 T22347 arg1Of contributed,unlike
R14997 T22332 T22331 arg1Of prominently,more
R14998 T22335 T22334 arg1Of increase,an
R14999 T22335 T22336 arg1Of increase,in
R15000 T22335 T22341 arg1Of increase,than
R15001 T22338 T22336 arg2Of synthesis,in
R15002 T22338 T22337 arg1Of synthesis,TNFα
R15003 T22341 T22333 arg2Of than,to
R15004 T22341 T22339 arg1Of than,","
R15005 T22341 T22340 arg1Of than,rather
R15006 T22343 T22341 arg2Of death,than
R15007 T22343 T22342 arg1Of death,cell
R15008 T22345 T22344 arg1Of se,per
R15009 T22349 T22347 arg2Of role,unlike
R15010 T22349 T22348 arg1Of role,its
R15011 T22349 T22350 arg1Of role,in
R15012 T22352 T22350 arg2Of cells,in
R15013 T22352 T22351 arg1Of cells,L929
R15014 T22355 T22353 arg1Of study,A
R15015 T22355 T22354 arg1Of study,recent
R15016 T22355 T22356 arg1Of study,[
R15017 T22355 T22359 arg1Of study,has
R15018 T22355 T22360 arg1Of study,demonstrated
R15019 T22357 T22356 arg2Of 15,[
R15020 T22358 T22356 arg3Of ],[
R15021 T22360 T22359 arg2Of demonstrated,has
R15022 T22364 T22363 arg2Of addition,in
R15023 T22364 T22365 arg1Of addition,to
R15024 T22367 T22365 arg2Of role,to
R15025 T22367 T22366 arg1Of role,its
R15026 T22367 T22368 arg1Of role,in
R15027 T22369 T22368 arg2Of necroptosis,in
R15028 T22371 T22372 arg1Of RIP1,plays
R15029 T22371 T22377 arg1Of RIP1,mediating
R15030 T22372 T22360 arg2Of plays,demonstrated
R15031 T22372 T22361 arg1Of plays,that
R15032 T22372 T22362 arg1Of plays,","
R15033 T22372 T22363 arg1Of plays,in
R15034 T22372 T22370 arg1Of plays,","
R15035 T22372 T22376 arg1Of plays,in
R15036 T22375 T22372 arg2Of role,plays
R15037 T22375 T22373 arg1Of role,an
R15038 T22375 T22374 arg1Of role,important
R15039 T22377 T22376 arg2Of mediating,in
R15040 T22379 T22377 arg2Of production,mediating
R15041 T22379 T22378 arg1Of production,the
R15042 T22379 T22380 arg1Of production,of
R15043 T22381 T22380 arg2Of TNFα,of
R15044 T22383 T22382 arg1Of data,These
R15045 T22383 T22384 arg1Of data,emphasize
R15046 T22383 T22393 arg1Of data,highlight
R15047 T22383 T22405 arg1Of data,accompanying
R15048 T22384 T22392 arg1Of emphasize,and
R15049 T22387 T22384 arg2Of complexity,emphasize
R15050 T22387 T22385 arg1Of complexity,the
R15051 T22387 T22386 arg1Of complexity,emerging
R15052 T22387 T22388 arg1Of complexity,of
R15053 T22391 T22388 arg2Of mechanisms,of
R15054 T22391 T22389 arg1Of mechanisms,necroptotic
R15055 T22391 T22390 arg1Of mechanisms,signaling
R15056 T22392 T22403 arg1Of and,","
R15057 T22392 T22405 modOf and,accompanying
R15058 T22392 T22414 arg1Of and,","
R15059 T22392 T22415 arg1Of and,[
R15060 T22392 T22418 arg1Of and,","
R15061 T22392 T22419 arg1Of and,[
R15062 T22393 T22392 arg2Of highlight,and
R15063 T22396 T22393 arg2Of contribution,highlight
R15064 T22396 T22394 arg1Of contribution,the
R15065 T22396 T22395 arg1Of contribution,major
R15066 T22396 T22397 arg1Of contribution,of
R15067 T22396 T22399 arg1Of contribution,to
R15068 T22398 T22397 arg2Of Akt,of
R15069 T22402 T22399 arg2Of signaling,to
R15070 T22402 T22400 arg2Of signaling,increased
R15071 T22402 T22401 arg1Of signaling,inflammatory
R15072 T22405 T22404 arg1Of accompanying,specifically
R15073 T22407 T22405 arg2Of form,accompanying
R15074 T22407 T22406 arg1Of form,this
R15075 T22407 T22408 arg1Of form,of
R15076 T22410 T22408 arg2Of necrosis,of
R15077 T22410 T22409 arg2Of necrosis,regulated
R15078 T22410 T22411 arg1Of necrosis,[
R15079 T22412 T22411 arg2Of 5,[
R15080 T22413 T22411 arg3Of ],[
R15081 T22416 T22415 arg2Of 6,[
R15082 T22417 T22415 arg3Of ],[
R15083 T22420 T22419 arg2Of 10,[
R15084 T22421 T22419 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21080 614-618 Protein denotes TNFα
T21079 554-558 Protein denotes RIP1
T21078 393-397 Protein denotes TNFα
T21077 286-290 Protein denotes FADD
T21076 36-40 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22943 614-618 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T22942 393-397 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T22929 554-558 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T22928 36-40 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T22916 741-744 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22915 332-335 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22914 61-64 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22882 741-744 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22881 332-335 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22880 61-64 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22848 741-744 http://www.uniprot.org/uniprot/P31749 denotes Akt
T22847 332-335 http://www.uniprot.org/uniprot/P31749 denotes Akt
T22846 61-64 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T20931 268-272 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T21251 821-839 http://purl.obolibrary.org/obo/GO_0097300 denotes regulated necrosis
T21224 831-839 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T21222 831-839 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T21220 831-839 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T21191 426-431 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T21178 831-839 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T21174 421-431 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T21165 398-407 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T21150 541-552 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T21126 541-552 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T21101 771-780 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T21100 680-689 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T21099 336-345 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T21098 101-110 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T21097 48-57 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T21285 464-469 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T21284 308-313 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T20974 620-855 Sentence denotes These data emphasize the emerging complexity of necroptotic signaling mechanisms and highlight the major contribution of Akt to increased inflammatory signaling, specifically accompanying this form of regulated necrosis [5], [6], [10].
T20973 471-619 Sentence denotes A recent study [15] has demonstrated that, in addition to its role in necroptosis, RIP1 plays an important role in mediating the production of TNFα.
T20972 246-470 Sentence denotes Importantly, in mouse lung fibroblasts, FADD-deficient Jurkat cells, and macrophages, Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death per se, unlike its role in L929 cells.
T20971 152-245 Sentence denotes At the same time, the significance of this connection varies in a cell type specific fashion.
T20970 0-151 Sentence denotes Importantly, our data revealed that RIP1 kinase signaling to Akt is a general feature of necroptotic signaling that is observed in multiple cell types.
T295 0-151 Sentence denotes Importantly, our data revealed that RIP1 kinase signaling to Akt is a general feature of necroptotic signaling that is observed in multiple cell types.
T296 152-245 Sentence denotes At the same time, the significance of this connection varies in a cell type specific fashion.
T297 246-470 Sentence denotes Importantly, in mouse lung fibroblasts, FADD-deficient Jurkat cells, and macrophages, Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death per se, unlike its role in L929 cells.
T298 471-619 Sentence denotes A recent study [15] has demonstrated that, in addition to its role in necroptosis, RIP1 plays an important role in mediating the production of TNFα.
T299 620-855 Sentence denotes These data emphasize the emerging complexity of necroptotic signaling mechanisms and highlight the major contribution of Akt to increased inflammatory signaling, specifically accompanying this form of regulated necrosis [5], [6], [10].

simple1

Id Subject Object Predicate Lexical cue
T21332 614-618 Protein denotes TNFα
T21331 554-558 Protein denotes RIP1
T21330 393-397 Protein denotes TNFα
T21329 286-290 Protein denotes FADD
T21328 36-40 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22778 554-558 Protein denotes RIP1
T22777 393-397 Protein denotes TNFα
T22807 600-610 Gene_expression denotes production
T22806 586-595 Positive_regulation denotes mediating
T22805 291-300 Negative_regulation denotes deficient
T22804 398-407 Gene_expression denotes synthesis
T22803 381-389 Positive_regulation denotes increase
T22779 614-618 Protein denotes TNFα
T22776 286-290 Protein denotes FADD
T22775 36-40 Protein denotes RIP1
R15389 T22776 T22805 themeOf FADD,deficient
R15390 T22777 T22804 themeOf TNFα,synthesis
R15391 T22779 T22807 themeOf TNFα,production
R15402 T22804 T22803 themeOf synthesis,increase
R15403 T22807 T22806 themeOf production,mediating

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23110 614-618 Protein denotes TNFα
T23109 554-558 Protein denotes RIP1
T23108 393-397 Protein denotes TNFα
T23107 286-290 Protein denotes FADD
T23106 36-40 Protein denotes RIP1
T23138 600-610 Gene_expression denotes production
T23137 586-595 Positive_regulation denotes mediating
T23136 398-407 Gene_expression denotes synthesis
T23135 291-300 Negative_regulation denotes deficient
T23134 381-389 Positive_regulation denotes increase
R15466 T23107 T23135 themeOf FADD,deficient
R15467 T23108 T23136 themeOf TNFα,synthesis
R15468 T23110 T23138 themeOf TNFα,production
R15477 T23136 T23134 themeOf synthesis,increase
R15478 T23138 T23137 themeOf production,mediating

DLUT931

Id Subject Object Predicate Lexical cue
T23017 586-595 Positive_regulation denotes mediating
T23016 600-610 Gene_expression denotes production
T23015 381-389 Positive_regulation denotes increase
T23014 398-407 Gene_expression denotes synthesis
T23013 291-300 Negative_regulation denotes deficient
T22980 614-618 Protein denotes TNFα
T22979 554-558 Protein denotes RIP1
T22978 393-397 Protein denotes TNFα
T22977 286-290 Protein denotes FADD
T22976 36-40 Protein denotes RIP1
R15439 T23014 T23015 themeOf synthesis,increase
R15440 T23016 T23017 themeOf production,mediating
R15422 T22977 T23013 themeOf FADD,deficient
R15423 T22978 T23014 themeOf TNFα,synthesis
R15424 T22979 T23017 causeOf RIP1,mediating
R15425 T22980 T23016 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23592 319-331 Entity denotes macrophages,
T23591 36-47 Protein denotes RIP1 kinase
T23584 262-284 Entity denotes mouse lung fibroblasts
T23553 738-744 Protein denotes of Akt
T23549 390-407 Protein denotes in TNFα synthesis
T23528 554-558 Protein denotes RIP1
T23524 286-313 Entity denotes FADD-deficient Jurkat cells
T23510 36-40 Protein denotes RIP1
T23499 218-236 Entity denotes cell type specific
T23646 36-57 Positive_regulation denotes RIP1 kinase signaling
T23638 586-618 Regulation denotes mediating the production of TNFα
T23636 332-431 Positive_regulation denotes Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death
T23631 596-618 Gene_expression denotes the production of TNFα
T23618 131-150 Entity denotes multiple cell types
T23616 436-469 Entity denotes se, unlike its role in L929 cells
T23603 332-335 Protein denotes Akt
T23600 611-618 Protein denotes of TNFα
T23596 61-64 Protein denotes Akt
R15673 T23591 T23646 causeOf RIP1 kinase,RIP1 kinase signaling
R15674 T23600 T23631 themeOf of TNFα,the production of TNFα
R15675 T23603 T23636 causeOf Akt,"Akt signaling contributed more prominently to an increase in TNFα synthesis, rather than cell death"
R15680 T23631 T23638 themeOf the production of TNFα,mediating the production of TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24773 854-855 . denotes .
T24772 853-854 NNP denotes ]
T24771 851-853 CD denotes 10
T24770 850-851 NNP denotes [
T24769 848-849 , denotes ,
T24768 847-848 NNP denotes ]
T24767 846-847 CD denotes 6
T24766 845-846 NNP denotes [
T24765 843-844 , denotes ,
T24764 842-843 NNP denotes ]
T24763 841-842 CD denotes 5
T24762 840-841 NN denotes [
T24761 831-839 NN denotes necrosis
T24760 821-830 VBN denotes regulated
T24759 818-820 IN denotes of
T24758 813-817 NN denotes form
T24757 808-812 DT denotes this
T24756 795-807 VBG denotes accompanying
T24755 782-794 RB denotes specifically
T24754 780-781 , denotes ,
T24753 771-780 VBG denotes signaling
T24667 268-272 NN denotes lung
T24666 262-267 NN denotes mouse
T24665 259-261 IN denotes in
T24664 257-258 , denotes ,
T24663 246-257 RB denotes Importantly
T24662 244-245 . denotes .
T24661 237-244 NN denotes fashion
T24660 228-236 JJ denotes specific
T24659 223-227 NN denotes type
T24658 218-222 NN denotes cell
T24657 216-217 DT denotes a
T24656 213-215 IN denotes in
T24655 206-212 VBZ denotes varies
T24654 195-205 NN denotes connection
T24653 190-194 DT denotes this
T24652 187-189 IN denotes of
T24651 174-186 NN denotes significance
T24650 170-173 DT denotes the
T24649 168-169 , denotes ,
T24648 164-168 NN denotes time
T24647 159-163 JJ denotes same
T24646 155-158 DT denotes the
T24645 152-154 IN denotes At
T24644 150-151 . denotes .
T24643 145-150 NNS denotes types
T24642 140-144 NN denotes cell
T24641 131-139 JJ denotes multiple
T24640 128-130 IN denotes in
T24639 119-127 VBN denotes observed
T24638 116-118 VBZ denotes is
T24637 111-115 DT denotes that
T24636 101-110 VBG denotes signaling
T24635 89-100 JJ denotes necroptotic
T24634 86-88 IN denotes of
T24633 78-85 NN denotes feature
T24632 70-77 JJ denotes general
T24631 68-69 DT denotes a
T24630 65-67 VBZ denotes is
T24629 61-64 NNP denotes Akt
T24628 58-60 TO denotes to
T24627 48-57 VBG denotes signaling
T24626 41-47 NN denotes kinase
T24625 36-40 CD denotes RIP1
T24624 31-35 IN denotes that
T24623 22-30 VBD denotes revealed
T24622 17-21 NNS denotes data
T24621 13-16 PRP$ denotes our
T24620 11-12 , denotes ,
T24619 0-11 RB denotes Importantly
T24752 758-770 JJ denotes inflammatory
T24751 748-757 VBN denotes increased
T24750 745-747 TO denotes to
T24749 741-744 NNP denotes Akt
T24748 738-740 IN denotes of
T24747 725-737 NN denotes contribution
T24746 719-724 JJ denotes major
T24745 715-718 DT denotes the
T24744 705-714 VB denotes highlight
T24743 701-704 CC denotes and
T24742 690-700 NNS denotes mechanisms
T24741 680-689 VBG denotes signaling
T24740 668-679 JJ denotes necroptotic
T24739 665-667 IN denotes of
T24738 654-664 NN denotes complexity
T24737 645-653 VBG denotes emerging
T24736 641-644 DT denotes the
T24735 631-640 VBP denotes emphasize
T24734 626-630 NNS denotes data
T24733 620-625 DT denotes These
T24732 618-619 . denotes .
T24731 614-618 NNP denotes TNFα
T24730 611-613 IN denotes of
T24729 600-610 NN denotes production
T24728 596-599 DT denotes the
T24727 586-595 VBG denotes mediating
T24726 583-585 IN denotes in
T24725 578-582 NN denotes role
T24724 568-577 JJ denotes important
T24723 565-567 DT denotes an
T24722 559-564 VBZ denotes plays
T24721 554-558 NNP denotes RIP1
T24720 552-553 , denotes ,
T24719 541-552 NN denotes necroptosis
T24718 538-540 IN denotes in
T24717 533-537 NN denotes role
T24716 529-532 PRP$ denotes its
T24715 526-528 TO denotes to
T24714 517-525 NN denotes addition
T24713 514-516 IN denotes in
T24712 512-513 , denotes ,
T24711 508-512 IN denotes that
T24710 495-507 VBN denotes demonstrated
T24709 491-494 VBZ denotes has
T24708 489-490 NNP denotes ]
T24707 487-489 CD denotes 15
T24706 486-487 NNP denotes [
T24705 480-485 NN denotes study
T24704 473-479 JJ denotes recent
T24703 471-472 DT denotes A
T24702 469-470 . denotes .
T24701 464-469 NNS denotes cells
T24700 459-463 CD denotes L929
T24699 456-458 IN denotes in
T24698 451-455 NN denotes role
T24697 447-450 PRP$ denotes its
T24696 440-446 IN denotes unlike
T24695 438-439 , denotes ,
T24694 436-438 FW denotes se
T24693 432-435 IN denotes per
T24692 426-431 NN denotes death
T24691 421-425 NN denotes cell
T24690 416-420 IN denotes than
T24689 409-415 RB denotes rather
T24688 407-408 , denotes ,
T24687 398-407 NN denotes synthesis
T24686 393-397 NNP denotes TNFα
T24685 390-392 IN denotes in
T24684 381-389 NN denotes increase
T24683 378-380 DT denotes an
T24682 375-377 TO denotes to
T24681 363-374 RB denotes prominently
T24680 358-362 JJR denotes more
T24679 346-357 VBD denotes contributed
T24678 336-345 VBG denotes signaling
T24677 332-335 NNP denotes Akt
T24676 330-331 , denotes ,
T24675 319-330 NNS denotes macrophages
T24674 315-318 CC denotes and
T24673 313-314 , denotes ,
T24672 308-313 NNS denotes cells
T24671 301-307 NNP denotes Jurkat
T24670 286-300 JJ denotes FADD-deficient
T24669 284-285 , denotes ,
T24668 273-284 NNS denotes fibroblasts
R16561 T24629 T24628 pobj Akt,to
R16563 T24630 T24623 ccomp is,revealed
R16565 T24631 T24633 det a,feature
R16569 T24632 T24633 amod general,feature
R16573 T24633 T24630 attr feature,is
R16575 T24634 T24633 prep of,feature
R16583 T24635 T24634 pobj necroptotic,of
R16588 T24636 T24633 acl signaling,feature
R16592 T24637 T24639 nsubjpass that,observed
R16596 T24638 T24639 auxpass is,observed
R16600 T24639 T24636 ccomp observed,signaling
R16604 T24640 T24639 prep in,observed
R16607 T24641 T24643 amod multiple,types
R16611 T24642 T24643 compound cell,types
R16615 T24643 T24640 pobj types,in
R16619 T24644 T24623 punct .,revealed
R16623 T24645 T24655 prep At,varies
R16625 T24646 T24648 det the,time
R16633 T24647 T24648 amod same,time
R16637 T24648 T24645 pobj time,At
R16641 T24649 T24655 punct ",",varies
R16645 T24650 T24651 det the,significance
R16649 T24651 T24655 nsubj significance,varies
R16650 T24652 T24651 prep of,significance
R16652 T24653 T24654 det this,connection
R16654 T24654 T24652 pobj connection,of
R16656 T24655 T24655 ROOT varies,varies
R16658 T24656 T24655 prep in,varies
R16659 T24657 T24661 det a,fashion
R16661 T24658 T24659 compound cell,type
R16663 T24659 T24660 npadvmod type,specific
R16665 T24660 T24661 amod specific,fashion
R16668 T24661 T24656 pobj fashion,in
R16671 T24662 T24655 punct .,varies
R16676 T24663 T24679 advmod Importantly,contributed
R16679 T24664 T24679 punct ",",contributed
R16683 T24665 T24679 prep in,contributed
R16685 T24619 T24623 advmod Importantly,revealed
R16686 T24620 T24623 punct ",",revealed
R16687 T24621 T24622 poss our,data
R16688 T24666 T24668 compound mouse,fibroblasts
R16689 T24622 T24623 nsubj data,revealed
R16690 T24623 T24623 ROOT revealed,revealed
R16691 T24624 T24630 mark that,is
R16692 T24625 T24626 nummod RIP1,kinase
R16693 T24667 T24668 compound lung,fibroblasts
R16694 T24626 T24630 nsubj kinase,is
R16695 T24627 T24626 acl signaling,kinase
R16696 T24668 T24665 pobj fibroblasts,in
R16697 T24628 T24627 prep to,signaling
R16698 T24669 T24668 punct ",",fibroblasts
R16699 T24670 T24672 amod FADD-deficient,cells
R16700 T24671 T24672 compound Jurkat,cells
R16701 T24672 T24668 conj cells,fibroblasts
R16702 T24726 T24725 prep in,role
R16703 T24727 T24726 pcomp mediating,in
R16704 T24728 T24729 det the,production
R16705 T24673 T24672 punct ",",cells
R16706 T24729 T24727 dobj production,mediating
R16707 T24730 T24729 prep of,production
R16708 T24731 T24730 pobj TNFα,of
R16709 T24674 T24672 cc and,cells
R16710 T24732 T24710 punct .,demonstrated
R16711 T24733 T24734 det These,data
R16712 T24675 T24672 conj macrophages,cells
R16713 T24734 T24735 nsubj data,emphasize
R16714 T24735 T24735 ROOT emphasize,emphasize
R16715 T24676 T24679 punct ",",contributed
R16716 T24736 T24738 det the,complexity
R16717 T24737 T24738 amod emerging,complexity
R16718 T24738 T24735 dobj complexity,emphasize
R16719 T24677 T24678 compound Akt,signaling
R16720 T24739 T24738 prep of,complexity
R16721 T24740 T24742 amod necroptotic,mechanisms
R16722 T24741 T24742 compound signaling,mechanisms
R16723 T24678 T24679 nsubj signaling,contributed
R16724 T24742 T24739 pobj mechanisms,of
R16725 T24743 T24735 cc and,emphasize
R16726 T24744 T24735 conj highlight,emphasize
R16727 T24679 T24679 ROOT contributed,contributed
R16728 T24680 T24681 advmod more,prominently
R16729 T24745 T24747 det the,contribution
R16730 T24746 T24747 amod major,contribution
R16731 T24681 T24679 advmod prominently,contributed
R16732 T24747 T24744 dobj contribution,highlight
R16733 T24748 T24747 prep of,contribution
R16734 T24749 T24748 pobj Akt,of
R16735 T24682 T24681 prep to,prominently
R16736 T24750 T24751 aux to,increased
R16737 T24751 T24753 amod increased,signaling
R16738 T24752 T24753 amod inflammatory,signaling
R16739 T24683 T24684 det an,increase
R16740 T24753 T24735 advcl signaling,emphasize
R16741 T24754 T24753 punct ",",signaling
R16742 T24684 T24682 pobj increase,to
R16743 T24755 T24756 advmod specifically,accompanying
R16744 T24756 T24753 conj accompanying,signaling
R16745 T24757 T24758 det this,form
R16746 T24758 T24756 dobj form,accompanying
R16747 T24685 T24684 prep in,increase
R16748 T24759 T24758 prep of,form
R16749 T24760 T24762 amod regulated,[
R16750 T24686 T24687 compound TNFα,synthesis
R16751 T24761 T24762 compound necrosis,[
R16752 T24762 T24759 pobj [,of
R16753 T24763 T24764 nummod 5,]
R16754 T24764 T24758 appos ],form
R16755 T24687 T24685 pobj synthesis,in
R16756 T24688 T24684 punct ",",increase
R16757 T24765 T24764 punct ",",]
R16758 T24766 T24768 compound [,]
R16759 T24689 T24690 advmod rather,than
R16760 T24767 T24768 compound 6,]
R16761 T24768 T24764 conj ],]
R16762 T24690 T24684 cc than,increase
R16763 T24769 T24768 punct ",",]
R16764 T24770 T24772 nmod [,]
R16765 T24771 T24772 nummod 10,]
R16766 T24691 T24692 compound cell,death
R16767 T24772 T24768 conj ],]
R16768 T24773 T24735 punct .,emphasize
R16769 T24692 T24684 conj death,increase
R16772 T24693 T24694 advmod per,se
R16776 T24694 T24679 npadvmod se,contributed
R16779 T24695 T24679 punct ",",contributed
R16786 T24696 T24679 prep unlike,contributed
R16790 T24697 T24698 poss its,role
R16793 T24698 T24696 pobj role,unlike
R16798 T24699 T24698 prep in,role
R16802 T24700 T24701 nummod L929,cells
R16805 T24701 T24699 pobj cells,in
R16809 T24702 T24679 punct .,contributed
R16813 T24703 T24705 det A,study
R16817 T24704 T24705 amod recent,study
R16821 T24705 T24710 nsubj study,demonstrated
R16824 T24706 T24708 nmod [,]
R16828 T24707 T24708 nummod 15,]
R16834 T24708 T24710 nsubj ],demonstrated
R16835 T24709 T24710 aux has,demonstrated
R16836 T24710 T24710 ROOT demonstrated,demonstrated
R16839 T24711 T24722 mark that,plays
R16842 T24712 T24722 punct ",",plays
R16845 T24713 T24722 prep in,plays
R16849 T24714 T24713 pobj addition,in
R16853 T24715 T24714 prep to,addition
R16856 T24716 T24717 poss its,role
R16860 T24717 T24715 pobj role,to
R16864 T24718 T24717 prep in,role
R16866 T24719 T24718 pobj necroptosis,in
R16868 T24720 T24722 punct ",",plays
R16869 T24721 T24722 nsubj RIP1,plays
R16871 T24722 T24710 ccomp plays,demonstrated
R16873 T24723 T24725 det an,role
R16875 T24724 T24725 amod important,role
R16877 T24725 T24722 dobj role,plays

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23285 741-744 Protein denotes Akt
T23284 586-595 Positive_regulation denotes mediating
T23283 600-610 Gene_expression denotes production
T23282 614-618 Protein denotes TNFα
T23281 554-558 Protein denotes RIP1
T23280 381-389 Positive_regulation denotes increase
T23279 398-407 Gene_expression denotes synthesis
T23278 291-300 Negative_regulation denotes deficient
T23277 393-397 Protein denotes TNFα
T23276 332-335 Protein denotes Akt
T23275 286-290 Protein denotes FADD
T23274 61-64 Protein denotes Akt
T23273 36-47 Protein denotes RIP1 kinase
R15543 T23275 T23278 themeOf FADD,deficient
R15544 T23277 T23279 themeOf TNFα,synthesis
R15545 T23279 T23280 themeOf synthesis,increase
R15546 T23281 T23284 causeOf RIP1,mediating
R15547 T23282 T23283 themeOf TNFα,production
R15548 T23283 T23284 themeOf production,mediating

test3

Id Subject Object Predicate Lexical cue
T20912 614-618 Protein denotes TNFα
T20911 600-610 Gene_expression denotes production
T20910 586-595 Positive_regulation denotes mediating
T20909 578-582 Regulation denotes role
T20908 554-558 Protein denotes RIP1
T20907 398-407 Gene_expression denotes synthesis
T20906 393-397 Protein denotes TNFα
T20905 381-389 Positive_regulation denotes increase
T20904 291-300 Negative_regulation denotes deficient
T20903 286-290 Protein denotes FADD
T20902 36-40 Protein denotes RIP1
T20835 614-618 Protein denotes TNFα
T20834 554-558 Protein denotes RIP1
T20833 393-397 Protein denotes TNFα
T20832 286-290 Protein denotes FADD
T20831 36-40 Protein denotes RIP1
R13948 T20903 T20904 themeOf FADD,deficient
R13949 T20906 T20907 themeOf TNFα,synthesis
R13950 T20907 T20905 themeOf synthesis,increase
R13951 T20908 T20909 causeOf RIP1,role
R13952 T20911 T20910 themeOf production,mediating
R13953 T20912 T20911 themeOf TNFα,production