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PMC:3585731 / 4638-4777 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T823 128-138 Gene_expression denotes production
T822 93-103 Positive_regulation denotes activation
T821 74-85 Positive_regulation denotes contributes
T810 123-127 Protein denotes TNFα
T809 71-73 Protein denotes S6
R498 T810 T823 themeOf TNFα,production
R502 T822 T821 themeOf activation,contributes
R503 T823 T822 themeOf production,activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1665 128-138 NN denotes production
T1664 123-127 NN denotes TNFα
T1663 119-122 CC denotes and
T1662 107-118 NN denotes necroptosis
T1661 104-106 IN denotes of
T1660 93-103 NN denotes activation
T1659 89-92 DT denotes the
T1658 86-88 TO denotes to
T1657 74-85 VB denotes contributes
T1656 71-73 NN denotes S6
T1655 67-70 CC denotes and
T1654 60-66 NN denotes mTORC1
T1653 52-59 IN denotes through
T1652 42-51 NN denotes signaling
T1651 38-41 NN denotes Akt
T1650 27-37 JJ denotes downstream
T1649 22-26 IN denotes that
T1648 16-21 VB denotes found
T1647 13-15 PRP denotes we
T1646 11-12 -COMMA- denotes ,
T1645 0-11 RB denotes Furthermore
R1095 T1647 T1648 arg1Of we,found
R1096 T1648 T1645 arg1Of found,Furthermore
R1097 T1648 T1646 arg1Of found,","
R1098 T1652 T1650 arg1Of signaling,downstream
R1099 T1652 T1651 arg1Of signaling,Akt
R1100 T1652 T1653 arg1Of signaling,through
R1101 T1652 T1657 arg1Of signaling,contributes
R1102 T1654 T1655 arg1Of mTORC1,and
R1103 T1655 T1653 arg2Of and,through
R1104 T1656 T1655 arg2Of S6,and
R1105 T1657 T1648 arg2Of contributes,found
R1106 T1657 T1649 arg1Of contributes,that
R1107 T1657 T1658 arg1Of contributes,to
R1108 T1660 T1658 arg2Of activation,to
R1109 T1660 T1659 arg1Of activation,the
R1110 T1660 T1661 arg1Of activation,of
R1111 T1662 T1663 arg1Of necroptosis,and
R1112 T1664 T1663 arg2Of TNFα,and
R1113 T1665 T1661 arg2Of production,of
R1114 T1665 T1662 arg1Of production,necroptosis
R1115 T1665 T1664 arg1Of production,TNFα

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T947 123-127 Protein denotes TNFα
T946 71-73 Protein denotes S6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1839 38-41 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1828 38-41 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1817 38-41 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1808 123-127 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T1017 42-51 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T969 93-118 http://purl.obolibrary.org/obo/GO_0070266 denotes activation of necroptosis
T988 107-118 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T1065 60-66 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T898 0-139 Sentence denotes Furthermore, we found that downstream Akt signaling through mTORC1 and S6 contributes to the activation of necroptosis and TNFα production.
T32 0-139 Sentence denotes Furthermore, we found that downstream Akt signaling through mTORC1 and S6 contributes to the activation of necroptosis and TNFα production.

simple1

Id Subject Object Predicate Lexical cue
T1081 123-127 Protein denotes TNFα
T1080 71-73 Protein denotes S6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1765 123-127 Protein denotes TNFα
T1764 71-73 Protein denotes S6
T1776 93-103 Positive_regulation denotes activation
T1775 128-138 Gene_expression denotes production
R1204 T1765 T1775 themeOf TNFα,production
R1208 T1775 T1776 themeOf production,activation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2149 128-138 Gene_expression denotes production
T2148 93-103 Positive_regulation denotes activation
T2137 123-127 Protein denotes TNFα
T2136 71-73 Protein denotes S6
R1458 T2137 T2149 themeOf TNFα,production
R1469 T2149 T2148 themeOf production,activation

DLUT931

Id Subject Object Predicate Lexical cue
T1897 74-85 Positive_regulation denotes contributes
T1896 93-103 Positive_regulation denotes activation
T1895 128-138 Gene_expression denotes production
T1884 123-127 Protein denotes TNFα
T1883 71-73 Protein denotes S6
R1219 T1884 T1895 themeOf TNFα,production
R1227 T1895 T1896 themeOf production,activation
R1228 T1896 T1897 themeOf activation,contributes

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2802 123-138 Gene_expression denotes TNFα production
T2794 13-51 Positive_regulation denotes we found that downstream Akt signaling
T2787 38-41 Protein denotes Akt
T2778 61-66 Entity denotes TORC1
T2769 123-127 Protein denotes TNFα
T2738 71-73 Protein denotes S6
R1984 T2787 T2794 causeOf Akt,we found that downstream Akt signaling
R1973 T2769 T2802 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2585 138-139 . denotes .
T2584 128-138 NN denotes production
T2583 123-127 JJ denotes TNFα
T2582 119-122 CC denotes and
T2581 107-118 NN denotes necroptosis
T2580 104-106 IN denotes of
T2579 93-103 NN denotes activation
T2578 89-92 DT denotes the
T2577 86-88 TO denotes to
T2576 74-85 VBZ denotes contributes
T2575 71-73 NNP denotes S6
T2574 67-70 CC denotes and
T2573 60-66 NNP denotes mTORC1
T2572 52-59 IN denotes through
T2571 42-51 VBG denotes signaling
T2570 38-41 NNP denotes Akt
T2569 27-37 JJ denotes downstream
T2568 22-26 IN denotes that
T2567 16-21 VBD denotes found
T2566 13-15 PRP denotes we
T2565 11-12 , denotes ,
T2564 0-11 RB denotes Furthermore
R1850 T2564 T2567 advmod Furthermore,found
R1852 T2565 T2567 punct ",",found
R1853 T2566 T2567 nsubj we,found
R1855 T2567 T2567 ROOT found,found
R1856 T2568 T2576 mark that,contributes
R1857 T2569 T2571 amod downstream,signaling
R1859 T2570 T2571 compound Akt,signaling
R1860 T2571 T2576 nsubj signaling,contributes
R1861 T2572 T2571 prep through,signaling
R1862 T2573 T2572 pobj mTORC1,through
R1863 T2574 T2573 cc and,mTORC1
R1864 T2575 T2573 conj S6,mTORC1
R1866 T2576 T2567 ccomp contributes,found
R1867 T2577 T2576 prep to,contributes
R1868 T2578 T2579 det the,activation
R1869 T2579 T2577 pobj activation,to
R1871 T2580 T2579 prep of,activation
R1872 T2581 T2580 pobj necroptosis,of
R1874 T2582 T2581 cc and,necroptosis
R1875 T2583 T2581 conj TNFα,necroptosis
R1876 T2584 T2579 conj production,activation
R1878 T2585 T2567 punct .,found

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2197 74-85 Positive_regulation denotes contributes
T2196 93-103 Positive_regulation denotes activation
T2195 128-138 Gene_expression denotes production
T2194 123-127 Protein denotes TNFα
T2193 71-73 Protein denotes S6
T2192 60-66 Protein denotes mTORC1
R1482 T2194 T2195 themeOf TNFα,production
R1483 T2195 T2196 themeOf production,activation
R1484 T2196 T2197 themeOf activation,contributes

test3

Id Subject Object Predicate Lexical cue
T841 123-127 Protein denotes TNFα
T840 71-73 Protein denotes S6
T869 128-138 Gene_expression denotes production
T868 123-127 Protein denotes TNFα
T867 71-73 Protein denotes S6
R510 T868 T869 themeOf TNFα,production