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PMC:3585731 / 4520-4636 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T13518 59-74 Phosphorylation denotes phosphorylation
T13517 42-51 Regulation denotes dependent
T13468 30-34 Protein denotes RIP1
T820 59-74 Phosphorylation denotes phosphorylation
T819 42-51 Regulation denotes dependent
T818 12-21 Positive_regulation denotes activated
T808 30-34 Protein denotes RIP1
R497 T808 T818 causeOf RIP1,activated
R501 T820 T818 causeOf phosphorylation,activated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14362 59-74 NN denotes phosphorylation
T14361 52-58 NN denotes Thr308
T14360 35-51 JJ denotes kinase-dependent
T14359 30-34 NN denotes RIP1
T1644 111-116 NN denotes types
T1643 106-110 NN denotes cell
T1642 97-105 JJ denotes multiple
T1641 94-96 IN denotes in
T1640 82-93 NN denotes necroptosis
T1639 75-81 IN denotes during
T1638 59-74 NN denotes phosphorylation
T1637 52-58 NN denotes Thr308
T1636 35-51 JJ denotes kinase-dependent
T1635 30-34 NN denotes RIP1
T1634 22-29 IN denotes through
T1633 12-21 VB denotes activated
T1632 9-11 VB denotes is
T1631 5-8 NN denotes Akt
T1630 0-4 IN denotes that
R1079 T1631 T1632 arg1Of Akt,is
R1080 T1631 T1633 arg2Of Akt,activated
R1082 T1633 T1630 arg1Of activated,that
R1083 T1633 T1632 arg2Of activated,is
R1084 T1633 T1634 arg1Of activated,through
R1085 T1633 T1639 arg1Of activated,during
R1086 T1638 T1634 arg2Of phosphorylation,through
R1087 T1638 T1635 arg1Of phosphorylation,RIP1
R1088 T1638 T1636 arg1Of phosphorylation,kinase-dependent
R1089 T1638 T1637 arg1Of phosphorylation,Thr308
R1090 T1640 T1639 arg2Of necroptosis,during
R1091 T1640 T1641 arg1Of necroptosis,in
R1092 T1644 T1641 arg2Of types,in
R1093 T1644 T1642 arg1Of types,multiple
R1094 T1644 T1643 arg1Of types,cell
R9343 T14362 T14359 arg1Of phosphorylation,RIP1
R9344 T14362 T14360 arg1Of phosphorylation,kinase-dependent
R9345 T14362 T14361 arg1Of phosphorylation,Thr308

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T945 30-34 Protein denotes RIP1
T13849 30-34 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15092 30-34 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T1838 5-8 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1827 5-8 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1816 5-8 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1803 30-34 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T13928 59-74 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T1047 59-74 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T968 82-93 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T987 82-93 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T1061 106-110 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

simple1

Id Subject Object Predicate Lexical cue
T14032 30-34 Protein denotes RIP1
T1079 30-34 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14963 59-74 Phosphorylation denotes phosphorylation
T14962 35-51 Positive_regulation denotes kinase-dependent
T14928 30-34 Protein denotes RIP1
T1774 35-51 Positive_regulation denotes kinase-dependent
T1773 59-74 Phosphorylation denotes phosphorylation
T1772 12-21 Positive_regulation denotes activated
T1763 30-34 Protein denotes RIP1
R9917 T14928 T14963 themeOf RIP1,phosphorylation
R9941 T14963 T14962 themeOf phosphorylation,kinase-dependent
R9942 T14963 T14962 themeOf phosphorylation,kinase-dependent
R1203 T1763 T1773 themeOf RIP1,phosphorylation
R1206 T1773 T1772 themeOf phosphorylation,activated
R1207 T1773 T1774 themeOf phosphorylation,kinase-dependent

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15277 59-74 Phosphorylation denotes phosphorylation
T15275 35-51 Regulation denotes kinase-dependent
T15242 30-34 Protein denotes RIP1
T2147 35-51 Regulation denotes kinase-dependent
T2146 12-21 Positive_regulation denotes activated
T2145 59-74 Phosphorylation denotes phosphorylation
T2135 30-34 Protein denotes RIP1
R10015 T15242 T15277 themeOf RIP1,phosphorylation
R10033 T15277 T15275 themeOf phosphorylation,kinase-dependent
R10034 T15277 T15275 themeOf phosphorylation,kinase-dependent
R1456 T2135 T2145 themeOf RIP1,phosphorylation
R1466 T2145 T2146 themeOf phosphorylation,activated
R1467 T2145 T2147 themeOf phosphorylation,kinase-dependent

DLUT931

Id Subject Object Predicate Lexical cue
T15150 35-51 Regulation denotes kinase-dependent
T15149 59-74 Phosphorylation denotes phosphorylation
T15115 30-34 Protein denotes RIP1
T1894 35-51 Positive_regulation denotes kinase-dependent
T1893 12-21 Positive_regulation denotes activated
T1892 59-74 Phosphorylation denotes phosphorylation
T1882 30-34 Protein denotes RIP1
R9955 T15115 T15149 themeOf RIP1,phosphorylation
R9985 T15149 T15150 themeOf phosphorylation,kinase-dependent
R9986 T15149 T15150 themeOf phosphorylation,kinase-dependent
R1218 T1882 T1892 themeOf RIP1,phosphorylation
R1225 T1892 T1893 themeOf phosphorylation,activated
R1226 T1892 T1894 themeOf phosphorylation,kinase-dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15674 30-51 Protein denotes RIP1 kinase-dependent
T15670 30-34 Protein denotes RIP1
T15647 52-58 Entity denotes Thr308
T2804 30-116 Regulation denotes RIP1 kinase-dependent Thr308 phosphorylation during necroptosis in multiple cell types
T2803 0-116 Positive_regulation denotes that Akt is activated through RIP1 kinase-dependent Thr308 phosphorylation during necroptosis in multiple cell types
T2793 30-34 Protein denotes RIP1
T2773 35-51 Protein denotes kinase-dependent
T2765 52-58 Entity denotes Thr308
T2764 97-116 Entity denotes multiple cell types
T2735 5-8 Protein denotes Akt
R1955 T2735 T2803 themeOf Akt,that Akt is activated through RIP1 kinase-dependent Thr308 phosphorylation during necroptosis in multiple cell types
R1976 T2773 T2804 causeOf kinase-dependent,RIP1 kinase-dependent Thr308 phosphorylation during necroptosis in multiple cell types

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16082 59-74 NN denotes phosphorylation
T16081 52-58 NNP denotes Thr308
T16080 35-51 JJ denotes kinase-dependent
T16079 30-34 CD denotes RIP1
T2562 111-116 NNS denotes types
T2561 106-110 NN denotes cell
T2560 97-105 JJ denotes multiple
T2559 94-96 IN denotes in
T2558 82-93 NN denotes necroptosis
T2557 75-81 IN denotes during
T2556 59-74 NN denotes phosphorylation
T2555 52-58 NNP denotes Thr308
T2554 35-51 JJ denotes kinase-dependent
T2553 30-34 NNP denotes RIP1
T2552 22-29 IN denotes through
T2551 12-21 VBN denotes activated
T2550 9-11 VBZ denotes is
T2549 5-8 NNP denotes Akt
T2548 0-4 IN denotes that
R1829 T2548 T2551 mark that,activated
R1830 T2549 T2551 nsubjpass Akt,activated
R1832 T2550 T2551 auxpass is,activated
R1834 T2552 T2551 prep through,activated
R1836 T2553 T2556 nmod RIP1,phosphorylation
R1837 T2554 T2556 amod kinase-dependent,phosphorylation
R1838 T2555 T2556 compound Thr308,phosphorylation
R1840 T2556 T2552 pobj phosphorylation,through
R1841 T2557 T2551 prep during,activated
R1842 T2558 T2557 pobj necroptosis,during
R1844 T2559 T2558 prep in,necroptosis
R1845 T2560 T2562 amod multiple,types
R1846 T2561 T2562 compound cell,types
R1848 T2562 T2559 pobj types,in
R10551 T16079 T16082 nummod RIP1,phosphorylation
R10552 T16080 T16082 amod kinase-dependent,phosphorylation
R10553 T16081 T16082 compound Thr308,phosphorylation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15344 30-41 Protein denotes RIP1 kinase
T15353 42-51 Positive_regulation denotes dependent
T15350 59-74 Phosphorylation denotes phosphorylation
T2191 12-21 Positive_regulation denotes activated
T2190 30-41 Protein denotes RIP1 kinase
T2189 5-8 Protein denotes Akt
R1479 T2189 T2191 themeOf Akt,activated
R10068 T15344 T15353 causeOf RIP1 kinase,dependent
R10074 T15350 T15353 themeOf phosphorylation,dependent

test3

Id Subject Object Predicate Lexical cue
T13626 59-74 Phosphorylation denotes phosphorylation
T13625 42-51 Regulation denotes dependent
T13624 30-34 Protein denotes RIP1
T13566 30-34 Protein denotes RIP1
T839 30-34 Protein denotes RIP1
T866 59-74 Phosphorylation denotes phosphorylation
T865 42-51 Regulation denotes dependent
T864 35-41 Negative_regulation denotes kinase
T863 30-34 Protein denotes RIP1
T862 12-21 Positive_regulation denotes activated
R8935 T13624 T13625 causeOf RIP1,dependent
R8936 T13626 T13625 themeOf phosphorylation,dependent
R508 T863 T865 causeOf RIP1,dependent
R509 T866 T865 themeOf phosphorylation,dependent