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PMC:3585731 / 43422-43579 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T20785 76-85 Regulation denotes targeting
T20784 32-40 Positive_regulation denotes increase
T20735 86-90 Protein denotes PDK1
T20734 64-68 Protein denotes RIP1
R13913 T20734 T20784 themeOf RIP1,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21652 148-156 RB denotes together
T21651 140-147 NN denotes kinases
T21650 136-139 CD denotes two
T21649 130-135 DT denotes these
T21648 124-129 VB denotes bring
T21647 119-123 WDT denotes that
T21646 111-118 NN denotes factors
T21645 99-110 NN denotes scaffolding
T21644 96-98 CC denotes or
T21643 92-95 NN denotes Akt
T21642 90-91 -COMMA- denotes ,
T21641 86-90 NN denotes PDK1
T21640 76-85 VB denotes targeting
T21639 69-75 NN denotes kinase
T21638 64-68 NN denotes RIP1
T21637 59-63 IN denotes from
T21636 51-58 VB denotes results
T21635 44-50 NN denotes Thr308
T21634 41-43 IN denotes in
T21633 32-40 NN denotes increase
T21632 28-31 DT denotes the
T21631 23-27 IN denotes that
T21630 20-22 VB denotes is
T21629 8-19 NN denotes possibility
T21628 0-7 DT denotes Another
R14272 T21629 T21628 arg1Of possibility,Another
R14273 T21629 T21630 arg1Of possibility,is
R14274 T21633 T21632 arg1Of increase,the
R14275 T21633 T21634 arg1Of increase,in
R14276 T21633 T21636 arg1Of increase,results
R14277 T21635 T21634 arg2Of Thr308,in
R14278 T21636 T21630 arg2Of results,is
R14279 T21636 T21631 arg1Of results,that
R14280 T21636 T21637 arg1Of results,from
R14281 T21639 T21637 arg2Of kinase,from
R14282 T21639 T21638 arg1Of kinase,RIP1
R14283 T21639 T21640 arg1Of kinase,targeting
R14284 T21641 T21642 arg1Of PDK1,","
R14285 T21642 T21644 arg1Of ",",or
R14286 T21643 T21642 arg2Of Akt,","
R14287 T21645 T21644 arg2Of scaffolding,or
R14288 T21646 T21640 arg2Of factors,targeting
R14289 T21646 T21641 arg1Of factors,PDK1
R14290 T21646 T21643 arg1Of factors,Akt
R14291 T21646 T21645 arg1Of factors,scaffolding
R14292 T21646 T21647 arg1Of factors,that
R14293 T21646 T21648 arg1Of factors,bring
R14294 T21651 T21648 arg2Of kinases,bring
R14295 T21651 T21649 arg1Of kinases,these
R14296 T21651 T21650 arg1Of kinases,two
R14297 T21651 T21652 arg1Of kinases,together

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T21051 86-90 Antecedent denotes PDK1
T21050 130-147 Anaphor denotes these two kinases
R13989 T21050 T21051 boundBy these two kinases,PDK1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21062 86-90 Protein denotes PDK1
T21061 64-68 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22923 64-68 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T22861 92-95 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22827 92-95 http://www.uniprot.org/uniprot/P31749 denotes Akt
T22895 92-95 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T21212 86-90 http://purl.obolibrary.org/obo/GO_0004740 denotes PDK1

GO-MF

Id Subject Object Predicate Lexical cue
T21274 86-90 http://purl.obolibrary.org/obo/GO_0004740 denotes PDK1

sentences

Id Subject Object Predicate Lexical cue
T20946 0-157 Sentence denotes Another possibility is that the increase in Thr308 results from RIP1 kinase targeting PDK1, Akt or scaffolding factors that bring these two kinases together.
T271 0-157 Sentence denotes Another possibility is that the increase in Thr308 results from RIP1 kinase targeting PDK1, Akt or scaffolding factors that bring these two kinases together.

simple1

Id Subject Object Predicate Lexical cue
T21314 86-90 Protein denotes PDK1
T21313 64-68 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22761 86-90 Protein denotes PDK1
T22760 64-68 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23092 86-90 Protein denotes PDK1
T23091 64-68 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T23003 76-85 Binding denotes targeting
T22962 86-90 Protein denotes PDK1
T22961 64-68 Protein denotes RIP1
R15413 T22961 T23003 themeOf RIP1,targeting
R15414 T22962 T23003 themeOf PDK1,targeting

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23594 92-95 Protein denotes Akt
T23590 64-118 Protein denotes RIP1 kinase targeting PDK1, Akt or scaffolding factors
T23537 41-50 Entity denotes in Thr308
T23520 86-90 Protein denotes PDK1
T23514 64-68 Protein denotes RIP1
T23508 130-147 Protein denotes these two kinases

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23976 156-157 . denotes .
T23975 148-156 RB denotes together
T23974 140-147 NNS denotes kinases
T23973 136-139 CD denotes two
T23972 130-135 DT denotes these
T23971 124-129 VBP denotes bring
T23970 119-123 WDT denotes that
T23969 111-118 NNS denotes factors
T23968 99-110 VBG denotes scaffolding
T23967 96-98 CC denotes or
T23966 92-95 NNP denotes Akt
T23965 90-91 , denotes ,
T23964 86-90 NNP denotes PDK1
T23963 76-85 VBG denotes targeting
T23962 69-75 NN denotes kinase
T23961 64-68 CD denotes RIP1
T23960 59-63 IN denotes from
T23959 51-58 NNS denotes results
T23958 44-50 CD denotes Thr308
T23957 41-43 IN denotes in
T23956 32-40 NN denotes increase
T23955 28-31 DT denotes the
T23954 23-27 IN denotes that
T23953 20-22 VBZ denotes is
T23952 8-19 NN denotes possibility
T23951 0-7 DT denotes Another
R15980 T23951 T23952 det Another,possibility
R15981 T23952 T23953 nsubj possibility,is
R15982 T23953 T23953 ROOT is,is
R15983 T23954 T23953 attr that,is
R15984 T23955 T23956 det the,increase
R15985 T23956 T23954 nsubj increase,that
R15986 T23957 T23956 prep in,increase
R15987 T23958 T23959 nummod Thr308,results
R15988 T23959 T23957 pobj results,in
R15989 T23960 T23956 prep from,increase
R15990 T23961 T23962 nummod RIP1,kinase
R15991 T23962 T23960 pobj kinase,from
R15992 T23963 T23956 acl targeting,increase
R15993 T23964 T23963 dobj PDK1,targeting
R15994 T23965 T23964 punct ",",PDK1
R15995 T23966 T23964 conj Akt,PDK1
R15996 T23967 T23963 cc or,targeting
R15997 T23968 T23963 conj scaffolding,targeting
R15998 T23969 T23968 dobj factors,scaffolding
R15999 T23970 T23971 nsubj that,bring
R16000 T23971 T23969 relcl bring,factors
R16001 T23972 T23974 det these,kinases
R16002 T23973 T23974 nummod two,kinases
R16003 T23974 T23971 dobj kinases,bring
R16004 T23975 T23971 advmod together,bring
R16005 T23976 T23953 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23216 92-95 Protein denotes Akt
T23215 86-90 Protein denotes PDK1
T23214 64-75 Protein denotes RIP1 kinase

test3

Id Subject Object Predicate Lexical cue
T20874 86-90 Protein denotes PDK1
T20873 64-68 Protein denotes RIP1
T20817 86-90 Protein denotes PDK1
T20816 64-68 Protein denotes RIP1