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PMC:3585731 / 434-685 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T25 218-227 Regulation denotes dependent
T24 198-207 Positive_regulation denotes activated
T23 159-169 Gene_expression denotes production
T22 146-150 Regulation denotes role
T16 213-217 Protein denotes RIP1
T15 154-158 Protein denotes TNFα
T14 41-45 Protein denotes RIP1
T13 9-39 Protein denotes receptor interacting protein-1
R5 T23 T22 themeOf production,role
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T248 244-247 PRP-DOLLAR- denotes its
T247 236-243 IN denotes through
T246 228-235 NN denotes fashion
T245 218-227 JJ denotes dependent
T244 213-217 NN denotes RIP1
T243 211-212 DT denotes a
T242 208-210 IN denotes in
T241 198-207 VB denotes activated
T240 195-197 VB denotes is
T239 191-194 NN denotes Akt
T238 189-190 -COMMA- denotes ,
T237 178-189 NN denotes necroptosis
T236 171-177 IN denotes During
T235 159-169 NN denotes production
T234 154-158 NN denotes TNFα
T233 151-153 IN denotes in
T232 146-150 NN denotes role
T231 142-145 JJ denotes key
T230 140-141 DT denotes a
T229 134-139 VB denotes plays
T228 130-133 CC denotes and
T227 124-129 NN denotes cells
T226 119-123 NN denotes L929
T225 116-118 IN denotes in
T224 104-115 NN denotes necroptosis
T223 100-103 IN denotes for
T222 91-99 JJ denotes critical
T221 88-90 VB denotes is
T220 79-87 NN denotes activity
T219 72-78 NN denotes kinase
T218 68-71 NN denotes Akt
T217 63-67 IN denotes that
T216 58-62 VB denotes show
T215 55-57 PRP denotes We
T214 47-53 NN denotes kinase
T213 45-46 -RRB- denotes )
T212 41-45 NN denotes RIP1
T211 40-41 -LRB- denotes (
T210 30-39 NN denotes protein-1
T209 18-29 NN denotes interacting
T208 9-17 NN denotes receptor
T207 0-8 NN denotes mediator
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 9-39 Protein denotes receptor interacting protein-1
T91 41-45 Protein denotes RIP1
T92 154-158 Protein denotes TNFα
T93 213-217 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 213-217 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T406 41-45 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 154-158 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 191-194 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T395 68-71 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 191-194 http://www.uniprot.org/uniprot/P31751 denotes Akt
T388 68-71 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 68-71 http://www.uniprot.org/uniprot/P31749 denotes Akt
T382 191-194 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 72-87 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T111 178-189 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 104-115 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 178-189 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 104-115 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 72-87 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T63 55-170 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T6 55-170 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.

simple1

Id Subject Object Predicate Lexical cue
T145 9-39 Protein denotes receptor interacting protein-1
T146 41-45 Protein denotes RIP1
T147 154-158 Protein denotes TNFα
T148 213-217 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 9-39 Protein denotes receptor interacting protein-1
T356 41-45 Protein denotes RIP1
T357 154-158 Protein denotes TNFα
T358 213-217 Protein denotes RIP1
T366 146-150 Regulation denotes role
T367 159-169 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 9-39 Protein denotes receptor interacting protein-1
T444 41-45 Protein denotes RIP1
T445 154-158 Protein denotes TNFα
T446 213-217 Protein denotes RIP1
T454 159-169 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 146-150 Regulation denotes role
T412 9-39 Protein denotes receptor interacting protein-1
T413 41-45 Protein denotes RIP1
T414 154-158 Protein denotes TNFα
T415 213-217 Protein denotes RIP1
T423 159-169 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 154-169 Gene_expression denotes TNFα production
T746 41-45 Protein denotes RIP1
T745 213-227 Protein denotes RIP1 dependent
T743 68-71 Protein denotes Akt
T742 68-78 Protein denotes Akt kinase
T736 9-46 Protein denotes receptor interacting protein-1 (RIP1)
T734 154-158 Protein denotes TNFα
T729 191-194 Protein denotes Akt
R431 T734 T764 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 171-177 IN denotes During
T572 169-170 . denotes .
T571 159-169 NN denotes production
T570 154-158 JJ denotes TNFα
T569 151-153 IN denotes in
T568 146-150 NN denotes role
T567 142-145 JJ denotes key
T566 140-141 DT denotes a
T565 134-139 VBZ denotes plays
T564 130-133 CC denotes and
T563 124-129 NNS denotes cells
T562 119-123 CD denotes L929
T561 116-118 IN denotes in
T560 104-115 NN denotes necroptosis
T559 100-103 IN denotes for
T558 91-99 JJ denotes critical
T557 88-90 VBZ denotes is
T556 79-87 NN denotes activity
T555 72-78 NN denotes kinase
T554 68-71 NNP denotes Akt
T553 63-67 IN denotes that
T552 58-62 VBP denotes show
T551 55-57 PRP denotes We
T550 53-54 . denotes .
T549 47-53 NN denotes kinase
T548 45-46 -RRB- denotes )
T547 41-45 CD denotes RIP1
T546 40-41 -LRB- denotes (
T545 30-39 NN denotes protein-1
T544 18-29 VBG denotes interacting
T543 9-17 NN denotes receptor
T542 0-8 NN denotes mediator
T585 244-247 PRP$ denotes its
T584 236-243 IN denotes through
T583 228-235 NN denotes fashion
T582 218-227 JJ denotes dependent
T581 213-217 NNP denotes RIP1
T580 211-212 DT denotes a
T579 208-210 IN denotes in
T578 198-207 VBN denotes activated
T577 195-197 VBZ denotes is
T576 191-194 NNP denotes Akt
T575 189-190 , denotes ,
T574 178-189 NN denotes necroptosis
R282 T542 T543 compound mediator,receptor
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R312 T572 T552 punct .,show
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 198-207 Positive_regulation denotes activated
T472 198-207 Positive_regulation denotes activated
T470 213-217 Protein denotes RIP1
T469 191-194 Protein denotes Akt
T468 159-169 Gene_expression denotes production
T467 154-158 Protein denotes TNFα
T466 68-78 Protein denotes Akt kinase
T463 41-45 Protein denotes RIP1
T462 0-39 Protein denotes mediator receptor interacting protein-1
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated

test3

Id Subject Object Predicate Lexical cue
T50 213-217 Protein denotes RIP1
T49 198-207 Positive_regulation denotes activated
T48 159-169 Gene_expression denotes production
T47 154-158 Protein denotes TNFα
T46 146-150 Regulation denotes role
T45 41-45 Protein denotes RIP1
T44 9-39 Protein denotes receptor interacting protein-1
T34 213-217 Protein denotes RIP1
T33 154-158 Protein denotes TNFα
T32 41-45 Protein denotes RIP1
T31 9-39 Protein denotes receptor interacting protein-1
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated