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PMC:3585731 / 421-705 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T26 261-276 Phosphorylation denotes phosphorylation
T25 231-240 Regulation denotes dependent
T24 211-220 Positive_regulation denotes activated
T23 172-182 Gene_expression denotes production
T22 159-163 Regulation denotes role
T16 226-230 Protein denotes RIP1
T15 167-171 Protein denotes TNFα
T14 54-58 Protein denotes RIP1
T13 22-52 Protein denotes receptor interacting protein-1
R5 T23 T22 themeOf production,role
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T250 277-279 IN denotes on
T249 261-276 NN denotes phosphorylation
T248 257-260 PRP-DOLLAR- denotes its
T247 249-256 IN denotes through
T246 241-248 NN denotes fashion
T245 231-240 JJ denotes dependent
T244 226-230 NN denotes RIP1
T243 224-225 DT denotes a
T242 221-223 IN denotes in
T241 211-220 VB denotes activated
T240 208-210 VB denotes is
T239 204-207 NN denotes Akt
T238 202-203 -COMMA- denotes ,
T237 191-202 NN denotes necroptosis
T236 184-190 IN denotes During
T235 172-182 NN denotes production
T234 167-171 NN denotes TNFα
T233 164-166 IN denotes in
T232 159-163 NN denotes role
T231 155-158 JJ denotes key
T230 153-154 DT denotes a
T229 147-152 VB denotes plays
T228 143-146 CC denotes and
T227 137-142 NN denotes cells
T226 132-136 NN denotes L929
T225 129-131 IN denotes in
T224 117-128 NN denotes necroptosis
T223 113-116 IN denotes for
T222 104-112 JJ denotes critical
T221 101-103 VB denotes is
T220 92-100 NN denotes activity
T219 85-91 NN denotes kinase
T218 81-84 NN denotes Akt
T217 76-80 IN denotes that
T216 71-75 VB denotes show
T215 68-70 PRP denotes We
T214 60-66 NN denotes kinase
T213 58-59 -RRB- denotes )
T212 54-58 NN denotes RIP1
T211 53-54 -LRB- denotes (
T210 43-52 NN denotes protein-1
T209 31-42 NN denotes interacting
T208 22-30 NN denotes receptor
T207 13-21 NN denotes mediator
T206 1-12 NN denotes necroptosis
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent
R110 T249 T247 arg2Of phosphorylation,through
R111 T249 T248 arg1Of phosphorylation,its
R112 T249 T250 arg1Of phosphorylation,on

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 22-52 Protein denotes receptor interacting protein-1
T91 54-58 Protein denotes RIP1
T92 167-171 Protein denotes TNFα
T93 226-230 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 226-230 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T406 54-58 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 167-171 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 204-207 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T395 81-84 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 204-207 http://www.uniprot.org/uniprot/P31751 denotes Akt
T388 81-84 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 81-84 http://www.uniprot.org/uniprot/P31749 denotes Akt
T382 204-207 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T130 261-276 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T129 85-100 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T111 191-202 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 117-128 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T109 1-12 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 191-202 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 117-128 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T101 1-12 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 85-100 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T63 68-183 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T6 68-183 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.

simple1

Id Subject Object Predicate Lexical cue
T145 22-52 Protein denotes receptor interacting protein-1
T146 54-58 Protein denotes RIP1
T147 167-171 Protein denotes TNFα
T148 226-230 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 22-52 Protein denotes receptor interacting protein-1
T356 54-58 Protein denotes RIP1
T357 167-171 Protein denotes TNFα
T358 226-230 Protein denotes RIP1
T366 159-163 Regulation denotes role
T367 172-182 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 22-52 Protein denotes receptor interacting protein-1
T444 54-58 Protein denotes RIP1
T445 167-171 Protein denotes TNFα
T446 226-230 Protein denotes RIP1
T454 172-182 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 159-163 Regulation denotes role
T412 22-52 Protein denotes receptor interacting protein-1
T413 54-58 Protein denotes RIP1
T414 167-171 Protein denotes TNFα
T415 226-230 Protein denotes RIP1
T423 172-182 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 167-182 Gene_expression denotes TNFα production
T746 54-58 Protein denotes RIP1
T745 226-240 Protein denotes RIP1 dependent
T743 81-84 Protein denotes Akt
T742 81-91 Protein denotes Akt kinase
T736 22-59 Protein denotes receptor interacting protein-1 (RIP1)
T734 167-171 Protein denotes TNFα
T729 204-207 Protein denotes Akt
R431 T734 T764 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 184-190 IN denotes During
T572 182-183 . denotes .
T571 172-182 NN denotes production
T570 167-171 JJ denotes TNFα
T569 164-166 IN denotes in
T568 159-163 NN denotes role
T567 155-158 JJ denotes key
T566 153-154 DT denotes a
T565 147-152 VBZ denotes plays
T564 143-146 CC denotes and
T563 137-142 NNS denotes cells
T562 132-136 CD denotes L929
T561 129-131 IN denotes in
T560 117-128 NN denotes necroptosis
T559 113-116 IN denotes for
T558 104-112 JJ denotes critical
T557 101-103 VBZ denotes is
T556 92-100 NN denotes activity
T555 85-91 NN denotes kinase
T554 81-84 NNP denotes Akt
T553 76-80 IN denotes that
T552 71-75 VBP denotes show
T551 68-70 PRP denotes We
T550 66-67 . denotes .
T549 60-66 NN denotes kinase
T548 58-59 -RRB- denotes )
T547 54-58 CD denotes RIP1
T546 53-54 -LRB- denotes (
T545 43-52 NN denotes protein-1
T544 31-42 VBG denotes interacting
T543 22-30 NN denotes receptor
T542 13-21 NN denotes mediator
T541 1-12 NN denotes necroptosis
T587 277-279 IN denotes on
T586 261-276 NN denotes phosphorylation
T585 257-260 PRP$ denotes its
T584 249-256 IN denotes through
T583 241-248 NN denotes fashion
T582 231-240 JJ denotes dependent
T581 226-230 NNP denotes RIP1
T580 224-225 DT denotes a
T579 221-223 IN denotes in
T578 211-220 VBN denotes activated
T577 208-210 VBZ denotes is
T576 204-207 NNP denotes Akt
T575 202-203 , denotes ,
T574 191-202 NN denotes necroptosis
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R312 T572 T552 punct .,show
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated
R325 T585 T586 poss its,phosphorylation
R326 T586 T584 pobj phosphorylation,through
R327 T587 T586 prep on,phosphorylation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 211-220 Positive_regulation denotes activated
T473 261-276 Phosphorylation denotes phosphorylation
T472 211-220 Positive_regulation denotes activated
T470 226-230 Protein denotes RIP1
T469 204-207 Protein denotes Akt
T468 172-182 Gene_expression denotes production
T467 167-171 Protein denotes TNFα
T466 81-91 Protein denotes Akt kinase
T463 54-58 Protein denotes RIP1
T462 13-52 Protein denotes mediator receptor interacting protein-1
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated
R221 T473 T474 themeOf phosphorylation,activated

test3

Id Subject Object Predicate Lexical cue
T51 261-276 Phosphorylation denotes phosphorylation
T50 226-230 Protein denotes RIP1
T49 211-220 Positive_regulation denotes activated
T48 172-182 Gene_expression denotes production
T47 167-171 Protein denotes TNFα
T46 159-163 Regulation denotes role
T45 54-58 Protein denotes RIP1
T44 22-52 Protein denotes receptor interacting protein-1
T34 226-230 Protein denotes RIP1
T33 167-171 Protein denotes TNFα
T32 54-58 Protein denotes RIP1
T31 22-52 Protein denotes receptor interacting protein-1
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated