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PMC:3585731 / 397-870 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T26 285-300 Phosphorylation denotes phosphorylation
T25 255-264 Regulation denotes dependent
T24 235-244 Positive_regulation denotes activated
T23 196-206 Gene_expression denotes production
T22 183-187 Regulation denotes role
T17 410-414 Protein denotes RIP1
T16 250-254 Protein denotes RIP1
T15 191-195 Protein denotes TNFα
T14 78-82 Protein denotes RIP1
T13 46-76 Protein denotes receptor interacting protein-1
R5 T23 T22 themeOf production,role
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T274 470-472 IN denotes of
T273 460-469 NN denotes targeting
T272 449-459 JJ denotes downstream
T271 441-448 IN denotes through
T270 429-440 NN denotes necroptosis
T269 420-428 VB denotes controls
T268 416-419 NN denotes Akt
T267 410-414 NN denotes RIP1
T266 406-409 CC denotes and
T265 398-405 NN denotes factors
T264 391-397 NN denotes growth
T263 386-390 DT denotes both
T262 381-385 IN denotes from
T261 374-380 NN denotes inputs
T260 364-373 NN denotes signaling
T259 352-363 JJ denotes independent
T258 343-351 VB denotes requires
T257 332-342 NN denotes activation
T256 327-331 DT denotes this
T255 325-326 -COMMA- denotes ,
T254 320-325 NN denotes cells
T253 315-319 NN denotes L929
T252 312-314 IN denotes In
T251 304-310 NN denotes Thr308
T250 301-303 IN denotes on
T249 285-300 NN denotes phosphorylation
T248 281-284 PRP-DOLLAR- denotes its
T247 273-280 IN denotes through
T246 265-272 NN denotes fashion
T245 255-264 JJ denotes dependent
T244 250-254 NN denotes RIP1
T243 248-249 DT denotes a
T242 245-247 IN denotes in
T241 235-244 VB denotes activated
T240 232-234 VB denotes is
T239 228-231 NN denotes Akt
T238 226-227 -COMMA- denotes ,
T237 215-226 NN denotes necroptosis
T236 208-214 IN denotes During
T235 196-206 NN denotes production
T234 191-195 NN denotes TNFα
T233 188-190 IN denotes in
T232 183-187 NN denotes role
T231 179-182 JJ denotes key
T230 177-178 DT denotes a
T229 171-176 VB denotes plays
T228 167-170 CC denotes and
T227 161-166 NN denotes cells
T226 156-160 NN denotes L929
T225 153-155 IN denotes in
T224 141-152 NN denotes necroptosis
T223 137-140 IN denotes for
T222 128-136 JJ denotes critical
T221 125-127 VB denotes is
T220 116-124 NN denotes activity
T219 109-115 NN denotes kinase
T218 105-108 NN denotes Akt
T217 100-104 IN denotes that
T216 95-99 VB denotes show
T215 92-94 PRP denotes We
T214 84-90 NN denotes kinase
T213 82-83 -RRB- denotes )
T212 78-82 NN denotes RIP1
T211 77-78 -LRB- denotes (
T210 67-76 NN denotes protein-1
T209 55-66 NN denotes interacting
T208 46-54 NN denotes receptor
T207 37-45 NN denotes mediator
T206 25-36 NN denotes necroptosis
T205 21-24 DT denotes the
T204 18-20 IN denotes by
T203 7-17 VB denotes controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent
R110 T249 T247 arg2Of phosphorylation,through
R111 T249 T248 arg1Of phosphorylation,its
R112 T249 T250 arg1Of phosphorylation,on
R113 T251 T250 arg2Of Thr308,on
R114 T254 T252 arg2Of cells,In
R115 T254 T253 arg1Of cells,L929
R116 T257 T256 arg1Of activation,this
R117 T257 T258 arg1Of activation,requires
R118 T258 T252 arg1Of requires,In
R119 T258 T255 arg1Of requires,","
R120 T261 T258 arg2Of inputs,requires
R121 T261 T259 arg1Of inputs,independent
R122 T261 T260 arg1Of inputs,signaling
R123 T261 T262 arg1Of inputs,from
R124 T265 T264 arg1Of factors,growth
R125 T265 T266 arg1Of factors,and
R126 T266 T262 arg2Of and,from
R127 T266 T263 arg1Of and,both
R128 T267 T266 arg2Of RIP1,and
R129 T268 T269 arg1Of Akt,controls
R130 T269 T271 arg1Of controls,through
R131 T270 T269 arg2Of necroptosis,controls
R132 T273 T271 arg2Of targeting,through
R133 T273 T272 arg1Of targeting,downstream
R134 T273 T274 arg1Of targeting,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T94 410-414 Protein denotes RIP1
T90 46-76 Protein denotes receptor interacting protein-1
T91 78-82 Protein denotes RIP1
T92 191-195 Protein denotes TNFα
T93 250-254 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T408 410-414 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T407 250-254 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T406 78-82 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 191-195 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T397 416-419 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T396 228-231 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T395 105-108 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T390 416-419 http://www.uniprot.org/uniprot/P31751 denotes Akt
T389 228-231 http://www.uniprot.org/uniprot/P31751 denotes Akt
T388 105-108 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 105-108 http://www.uniprot.org/uniprot/P31749 denotes Akt
T382 228-231 http://www.uniprot.org/uniprot/P31749 denotes Akt
T383 416-419 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T132 391-397 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T131 320-342 http://purl.obolibrary.org/obo/GO_0001775 denotes cells, this activation
T130 285-300 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T129 109-124 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T128 364-373 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T112 429-440 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T111 215-226 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 141-152 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T109 25-36 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T104 429-440 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T103 215-226 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 141-152 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T101 25-36 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 109-124 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T63 92-207 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T64 208-311 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.
T65 312-415 Sentence denotes In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1.
T6 92-207 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T7 208-311 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.
T8 312-415 Sentence denotes In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1.

simple1

Id Subject Object Predicate Lexical cue
T145 46-76 Protein denotes receptor interacting protein-1
T146 78-82 Protein denotes RIP1
T147 191-195 Protein denotes TNFα
T148 250-254 Protein denotes RIP1
T149 410-414 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 46-76 Protein denotes receptor interacting protein-1
T356 78-82 Protein denotes RIP1
T357 191-195 Protein denotes TNFα
T358 250-254 Protein denotes RIP1
T359 410-414 Protein denotes RIP1
T366 183-187 Regulation denotes role
T367 196-206 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 46-76 Protein denotes receptor interacting protein-1
T444 78-82 Protein denotes RIP1
T445 191-195 Protein denotes TNFα
T446 250-254 Protein denotes RIP1
T447 410-414 Protein denotes RIP1
T454 196-206 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T425 343-351 Positive_regulation denotes requires
T424 183-187 Regulation denotes role
T412 46-76 Protein denotes receptor interacting protein-1
T413 78-82 Protein denotes RIP1
T414 191-195 Protein denotes TNFα
T415 250-254 Protein denotes RIP1
T416 410-414 Protein denotes RIP1
T423 196-206 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R460 T416 T425 themeOf RIP1,requires
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 191-206 Gene_expression denotes TNFα production
T760 312-414 Regulation denotes In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1
T758 208-310 Phosphorylation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T757 208-310 Positive_regulation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T748 18-90 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 78-82 Protein denotes RIP1
T745 250-264 Protein denotes RIP1 dependent
T743 105-108 Protein denotes Akt
T742 105-115 Protein denotes Akt kinase
T737 301-310 Entity denotes on Thr308
T736 46-83 Protein denotes receptor interacting protein-1 (RIP1)
T734 191-195 Protein denotes TNFα
T733 416-419 Protein denotes Akt
T732 410-414 Protein denotes RIP1
T729 228-231 Protein denotes Akt
R433 T737 T758 siteOf on Thr308,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R429 T729 T757 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R430 T729 T758 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R431 T734 T764 themeOf TNFα,TNFα production
R432 T737 T729 partOf on Thr308,Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T613 470-472 IN denotes of
T612 460-469 VBG denotes targeting
T611 449-459 JJ denotes downstream
T610 441-448 IN denotes through
T609 429-440 NN denotes necroptosis
T608 420-428 VBZ denotes controls
T607 416-419 NNP denotes Akt
T606 414-415 . denotes .
T605 410-414 NNP denotes RIP1
T604 406-409 CC denotes and
T603 398-405 NNS denotes factors
T602 391-397 NN denotes growth
T601 386-390 DT denotes both
T600 381-385 IN denotes from
T599 374-380 NNS denotes inputs
T598 364-373 VBG denotes signaling
T597 352-363 JJ denotes independent
T596 343-351 VBZ denotes requires
T595 332-342 NN denotes activation
T594 327-331 DT denotes this
T573 208-214 IN denotes During
T572 206-207 . denotes .
T571 196-206 NN denotes production
T570 191-195 JJ denotes TNFα
T569 188-190 IN denotes in
T568 183-187 NN denotes role
T567 179-182 JJ denotes key
T566 177-178 DT denotes a
T565 171-176 VBZ denotes plays
T564 167-170 CC denotes and
T563 161-166 NNS denotes cells
T562 156-160 CD denotes L929
T561 153-155 IN denotes in
T560 141-152 NN denotes necroptosis
T559 137-140 IN denotes for
T558 128-136 JJ denotes critical
T557 125-127 VBZ denotes is
T556 116-124 NN denotes activity
T555 109-115 NN denotes kinase
T554 105-108 NNP denotes Akt
T553 100-104 IN denotes that
T552 95-99 VBP denotes show
T551 92-94 PRP denotes We
T550 90-91 . denotes .
T549 84-90 NN denotes kinase
T548 82-83 -RRB- denotes )
T547 78-82 CD denotes RIP1
T546 77-78 -LRB- denotes (
T545 67-76 NN denotes protein-1
T544 55-66 VBG denotes interacting
T543 46-54 NN denotes receptor
T542 37-45 NN denotes mediator
T541 25-36 NN denotes necroptosis
T540 21-24 DT denotes the
T539 18-20 IN denotes by
T538 7-17 VBN denotes controlled
T593 325-326 , denotes ,
T592 320-325 NNS denotes cells
T591 315-319 CD denotes L929
T590 312-314 IN denotes In
T589 310-311 . denotes .
T588 304-310 NNP denotes Thr308
T587 301-303 IN denotes on
T586 285-300 NN denotes phosphorylation
T585 281-284 PRP$ denotes its
T584 273-280 IN denotes through
T583 265-272 NN denotes fashion
T582 255-264 JJ denotes dependent
T581 250-254 NNP denotes RIP1
T580 248-249 DT denotes a
T579 245-247 IN denotes in
T578 235-244 VBN denotes activated
T577 232-234 VBZ denotes is
T576 228-231 NNP denotes Akt
T575 226-227 , denotes ,
T574 215-226 NN denotes necroptosis
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R312 T572 T552 punct .,show
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated
R325 T585 T586 poss its,phosphorylation
R326 T586 T584 pobj phosphorylation,through
R327 T587 T586 prep on,phosphorylation
R328 T588 T587 pobj Thr308,on
R329 T589 T578 punct .,activated
R330 T590 T596 prep In,requires
R331 T591 T592 nummod L929,cells
R332 T592 T590 pobj cells,In
R333 T593 T596 punct ",",requires
R334 T594 T595 det this,activation
R335 T595 T596 nsubj activation,requires
R336 T596 T596 ROOT requires,requires
R337 T597 T599 amod independent,inputs
R338 T598 T599 amod signaling,inputs
R339 T599 T596 dobj inputs,requires
R340 T600 T599 prep from,inputs
R341 T601 T603 det both,factors
R342 T602 T603 compound growth,factors
R343 T603 T600 pobj factors,from
R344 T604 T603 cc and,factors
R345 T605 T603 conj RIP1,factors
R346 T606 T596 punct .,requires
R347 T607 T608 nsubj Akt,controls
R348 T608 T608 ROOT controls,controls
R349 T609 T608 dobj necroptosis,controls
R350 T610 T608 prep through,controls
R351 T611 T612 amod downstream,targeting
R352 T612 T610 pobj targeting,through
R353 T613 T612 prep of,targeting

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T475 410-414 Protein denotes RIP1
T474 235-244 Positive_regulation denotes activated
T473 285-300 Phosphorylation denotes phosphorylation
T472 235-244 Positive_regulation denotes activated
T471 304-310 Protein denotes Thr308
T470 250-254 Protein denotes RIP1
T469 228-231 Protein denotes Akt
T468 196-206 Gene_expression denotes production
T467 191-195 Protein denotes TNFα
T466 105-115 Protein denotes Akt kinase
T465 7-17 Regulation denotes controlled
T464 7-17 Regulation denotes controlled
T463 78-82 Protein denotes RIP1
T462 37-76 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated
R220 T471 T473 themeOf Thr308,phosphorylation
R221 T473 T474 themeOf phosphorylation,activated

test3

Id Subject Object Predicate Lexical cue
T52 410-414 Protein denotes RIP1
T51 285-300 Phosphorylation denotes phosphorylation
T50 250-254 Protein denotes RIP1
T49 235-244 Positive_regulation denotes activated
T48 196-206 Gene_expression denotes production
T47 191-195 Protein denotes TNFα
T46 183-187 Regulation denotes role
T45 78-82 Protein denotes RIP1
T44 46-76 Protein denotes receptor interacting protein-1
T43 7-17 Regulation denotes controlled
T35 410-414 Protein denotes RIP1
T34 250-254 Protein denotes RIP1
T33 191-195 Protein denotes TNFα
T32 78-82 Protein denotes RIP1
T31 46-76 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated