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PMC:3585731 / 39494-39725 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T18162 85-89 Protein denotes TNFα
T18202 163-178 Phosphorylation denotes phosphorylation
T18201 123-132 Negative_regulation denotes inhibited
T18200 90-100 Gene_expression denotes production
T18199 75-84 Negative_regulation denotes inhibited
R12084 T18162 T18200 themeOf TNFα,production
R12100 T18200 T18199 themeOf production,inhibited
R12101 T18202 T18201 themeOf phosphorylation,inhibited

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18885 229-230 -RRB- denotes )
T18884 225-229 NN denotes S10B
T18883 220-224 NN denotes Fig.
T18882 219-220 -LRB- denotes (
T18881 212-218 NN denotes Thr308
T18880 208-211 CC denotes and
T18879 201-207 NN denotes Ser473
T18878 196-200 CC denotes both
T18877 193-195 IN denotes at
T18876 189-192 NN denotes Akt
T18875 186-188 IN denotes of
T18874 179-185 NN denotes levels
T18873 163-178 NN denotes phosphorylation
T18872 148-162 JJ denotes post-treatment
T18871 144-147 CC denotes and
T18870 138-143 JJ denotes basal
T18869 133-137 CC denotes both
T18868 123-132 VB denotes inhibited
T18867 121-122 -COMMA- denotes ,
T18866 120-121 -RRB- denotes )
T18865 116-120 NN denotes S10A
T18864 112-115 NN denotes S2A
T18863 110-111 NN denotes B
T18862 109-110 -COMMA- denotes ,
T18861 107-109 NN denotes 2A
T18860 102-106 NNP denotes Fig.
T18859 101-102 -LRB- denotes (
T18858 90-100 NN denotes production
T18857 85-89 NN denotes TNFα
T18856 75-84 VB denotes inhibited
T18855 71-74 CC denotes and
T18854 65-70 NN denotes death
T18853 60-64 IN denotes from
T18852 54-59 NN denotes cells
T18851 49-53 NN denotes L929
T18850 39-48 VB denotes protected
T18849 33-38 WDT denotes which
T18848 31-32 -COMMA- denotes ,
T18847 23-31 NN denotes SP600125
T18846 18-22 IN denotes that
T18845 12-17 VB denotes found
T18844 9-11 PRP denotes we
T18843 7-8 -COMMA- denotes ,
T18842 0-7 RB denotes However
R12491 T18844 T18845 arg1Of we,found
R12492 T18845 T18842 arg1Of found,However
R12493 T18845 T18843 arg1Of found,","
R12494 T18847 T18848 arg1Of SP600125,","
R12495 T18847 T18849 arg1Of SP600125,which
R12496 T18847 T18850 arg1Of SP600125,protected
R12497 T18847 T18856 arg1Of SP600125,inhibited
R12498 T18847 T18868 arg1Of SP600125,inhibited
R12499 T18850 T18853 arg1Of protected,from
R12500 T18850 T18855 arg1Of protected,and
R12501 T18852 T18850 arg2Of cells,protected
R12502 T18852 T18851 arg1Of cells,L929
R12503 T18854 T18853 arg2Of death,from
R12504 T18855 T18859 arg1Of and,(
R12505 T18856 T18855 arg2Of inhibited,and
R12506 T18858 T18856 arg2Of production,inhibited
R12507 T18858 T18857 arg1Of production,TNFα
R12508 T18861 T18860 arg1Of 2A,Fig.
R12509 T18861 T18862 arg1Of 2A,","
R12510 T18862 T18859 arg2Of ",",(
R12511 T18865 T18862 arg2Of S10A,","
R12512 T18865 T18863 arg1Of S10A,B
R12513 T18865 T18864 arg1Of S10A,S2A
R12514 T18866 T18859 arg3Of ),(
R12515 T18868 T18845 arg2Of inhibited,found
R12516 T18868 T18846 arg1Of inhibited,that
R12517 T18868 T18867 arg1Of inhibited,","
R12518 T18868 T18877 arg1Of inhibited,at
R12519 T18870 T18871 arg1Of basal,and
R12520 T18872 T18871 arg2Of post-treatment,and
R12521 T18874 T18868 arg2Of levels,inhibited
R12522 T18874 T18869 arg1Of levels,both
R12523 T18874 T18870 arg1Of levels,basal
R12524 T18874 T18872 arg1Of levels,post-treatment
R12525 T18874 T18873 arg1Of levels,phosphorylation
R12526 T18874 T18875 arg1Of levels,of
R12527 T18876 T18875 arg2Of Akt,of
R12528 T18879 T18880 arg1Of Ser473,and
R12529 T18880 T18877 arg2Of and,at
R12530 T18880 T18878 arg1Of and,both
R12531 T18880 T18882 arg1Of and,(
R12532 T18881 T18880 arg2Of Thr308,and
R12533 T18884 T18882 arg2Of S10B,(
R12534 T18884 T18883 arg1Of S10B,Fig.
R12535 T18885 T18882 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18396 85-89 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19386 85-89 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T19380 189-192 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T19336 189-192 http://www.uniprot.org/uniprot/P31749 denotes Akt
T19358 189-192 http://www.uniprot.org/uniprot/P31751 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T18465 65-70 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T18448 163-178 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T18485 54-59 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T18324 0-231 Sentence denotes However, we found that SP600125, which protected L929 cells from death and inhibited TNFα production (Fig. 2A,B S2A S10A), inhibited both basal and post-treatment phosphorylation levels of Akt at both Ser473 and Thr308 (Fig. S10B).
T245 0-231 Sentence denotes However, we found that SP600125, which protected L929 cells from death and inhibited TNFα production (Fig. 2A,B S2A S10A), inhibited both basal and post-treatment phosphorylation levels of Akt at both Ser473 and Thr308 (Fig. S10B).

simple1

Id Subject Object Predicate Lexical cue
T18499 85-89 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19299 75-84 Negative_regulation denotes inhibited
T19298 90-100 Gene_expression denotes production
T19276 85-89 Protein denotes TNFα
R12909 T19276 T19298 themeOf TNFα,production
R12925 T19298 T19299 themeOf production,inhibited

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19499 85-89 Protein denotes TNFα
T19522 90-100 Gene_expression denotes production
T19521 75-84 Negative_regulation denotes inhibited
R12978 T19499 T19522 themeOf TNFα,production
R12992 T19522 T19521 themeOf production,inhibited

DLUT931

Id Subject Object Predicate Lexical cue
T19432 90-100 Gene_expression denotes production
T19407 85-89 Protein denotes TNFα
T19433 75-84 Negative_regulation denotes inhibited
R12938 T19407 T19432 themeOf TNFα,production
R12948 T19432 T19433 themeOf production,inhibited

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19893 33-100 Negative_regulation denotes which protected L929 cells from death and inhibited TNFα production
T19892 85-100 Gene_expression denotes TNFα production
T19871 102-105 Protein denotes Fig
T19870 201-207 Entity denotes Ser473
T19825 189-192 Protein denotes Akt
T19820 18-32 Entity denotes that SP600125,
T19814 212-218 Entity denotes Thr308
T19787 85-89 Protein denotes TNFα
R13127 T19787 T19892 themeOf TNFα,TNFα production
R13151 T19892 T19893 themeOf TNFα production,which protected L929 cells from death and inhibited TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20284 230-231 . denotes .
T20283 229-230 -RRB- denotes )
T20282 225-229 CD denotes S10B
T20281 223-224 . denotes .
T20280 220-223 NNP denotes Fig
T20279 219-220 -LRB- denotes (
T20278 212-218 NNP denotes Thr308
T20277 208-211 CC denotes and
T20276 201-207 NNP denotes Ser473
T20275 196-200 DT denotes both
T20274 193-195 IN denotes at
T20273 189-192 NNP denotes Akt
T20272 186-188 IN denotes of
T20271 179-185 NNS denotes levels
T20270 163-178 NN denotes phosphorylation
T20269 148-162 JJ denotes post-treatment
T20268 144-147 CC denotes and
T20267 138-143 JJ denotes basal
T20266 133-137 DT denotes both
T20265 123-132 VBN denotes inhibited
T20264 121-122 , denotes ,
T20263 120-121 -RRB- denotes )
T20262 116-120 NNP denotes S10A
T20261 112-115 NNP denotes S2A
T20260 110-111 NNP denotes B
T20259 109-110 , denotes ,
T20258 107-109 NNP denotes 2A
T20257 102-106 NNP denotes Fig.
T20256 101-102 -LRB- denotes (
T20255 90-100 NN denotes production
T20254 85-89 NNP denotes TNFα
T20253 75-84 VBD denotes inhibited
T20252 71-74 CC denotes and
T20251 65-70 NN denotes death
T20250 60-64 IN denotes from
T20249 54-59 NNS denotes cells
T20248 49-53 CD denotes L929
T20247 39-48 VBD denotes protected
T20246 33-38 WDT denotes which
T20245 31-32 , denotes ,
T20244 23-31 CD denotes SP600125
T20243 18-22 IN denotes that
T20242 12-17 VBD denotes found
T20241 9-11 PRP denotes we
T20240 7-8 , denotes ,
T20239 0-7 RB denotes However
R13490 T20239 T20242 advmod However,found
R13491 T20240 T20242 punct ",",found
R13492 T20241 T20242 nsubj we,found
R13493 T20242 T20242 ROOT found,found
R13494 T20243 T20242 dobj that,found
R13495 T20244 T20243 nsubj SP600125,that
R13496 T20245 T20244 punct ",",SP600125
R13497 T20246 T20247 nsubj which,protected
R13498 T20247 T20244 relcl protected,SP600125
R13499 T20248 T20249 nummod L929,cells
R13500 T20249 T20247 dobj cells,protected
R13501 T20250 T20247 prep from,protected
R13502 T20251 T20250 pobj death,from
R13503 T20252 T20247 cc and,protected
R13504 T20253 T20247 conj inhibited,protected
R13505 T20254 T20255 compound TNFα,production
R13506 T20255 T20253 dobj production,inhibited
R13507 T20256 T20258 punct (,2A
R13508 T20257 T20258 compound Fig.,2A
R13509 T20258 T20255 appos 2A,production
R13510 T20259 T20258 punct ",",2A
R13511 T20260 T20262 compound B,S10A
R13512 T20261 T20262 compound S2A,S10A
R13513 T20262 T20258 appos S10A,2A
R13514 T20263 T20258 punct ),2A
R13515 T20264 T20253 punct ",",inhibited
R13516 T20265 T20253 conj inhibited,inhibited
R13517 T20266 T20267 preconj both,basal
R13518 T20267 T20271 amod basal,levels
R13519 T20268 T20267 cc and,basal
R13520 T20269 T20267 conj post-treatment,basal
R13521 T20270 T20271 compound phosphorylation,levels
R13522 T20271 T20265 dobj levels,inhibited
R13523 T20272 T20271 prep of,levels
R13524 T20273 T20272 pobj Akt,of
R13525 T20274 T20265 prep at,inhibited
R13526 T20275 T20276 preconj both,Ser473
R13527 T20276 T20274 pobj Ser473,at
R13528 T20277 T20276 cc and,Ser473
R13529 T20278 T20276 conj Thr308,Ser473
R13530 T20279 T20280 punct (,Fig
R13531 T20280 T20278 appos Fig,Thr308
R13532 T20281 T20242 punct .,found
R13533 T20282 T20282 ROOT S10B,S10B
R13534 T20283 T20282 punct ),S10B
R13535 T20284 T20282 punct .,S10B

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19607 123-132 Negative_regulation denotes inhibited
T19606 163-178 Phosphorylation denotes phosphorylation
T19605 189-192 Protein denotes Akt
R13037 T19605 T19606 themeOf Akt,phosphorylation
R13038 T19606 T19607 themeOf phosphorylation,inhibited

test3

Id Subject Object Predicate Lexical cue
T18274 163-178 Phosphorylation denotes phosphorylation
T18273 123-132 Negative_regulation denotes inhibited
T18272 90-100 Gene_expression denotes production
T18271 85-89 Protein denotes TNFα
T18270 75-84 Negative_regulation denotes inhibited
T18228 85-89 Protein denotes TNFα
R12112 T18271 T18272 themeOf TNFα,production
R12113 T18272 T18270 themeOf production,inhibited
R12114 T18274 T18273 themeOf phosphorylation,inhibited