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PMC:3585731 / 39365-39493 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T18198 52-67 Phosphorylation denotes phosphorylation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18841 124-127 NN denotes JNK
T18840 122-123 -COMMA- denotes ,
T18839 115-122 NN denotes pathway
T18838 111-114 DT denotes the
T18837 108-110 IN denotes in
T18836 101-107 NN denotes kinase
T18835 90-100 JJ denotes downstream
T18834 88-89 DT denotes a
T18833 85-87 IN denotes of
T18832 74-84 NN denotes inhibition
T18831 68-73 IN denotes after
T18830 52-67 NN denotes phosphorylation
T18829 48-51 NN denotes Akt
T18828 39-47 VB denotes examined
T18827 36-38 PRP denotes we
T18826 34-35 -COMMA- denotes ,
T18825 29-34 NN denotes model
T18824 25-28 PRP-DOLLAR- denotes our
T18823 20-24 VB denotes test
T18822 12-19 RB denotes further
T18821 9-11 TO denotes to
T18820 3-8 NN denotes order
T18819 0-2 IN denotes In
R12468 T18820 T18819 arg2Of order,In
R12469 T18823 T18819 arg3Of test,In
R12470 T18823 T18821 arg1Of test,to
R12471 T18823 T18822 arg1Of test,further
R12472 T18825 T18823 arg2Of model,test
R12473 T18825 T18824 arg1Of model,our
R12474 T18827 T18823 arg1Of we,test
R12475 T18827 T18828 arg1Of we,examined
R12476 T18828 T18819 arg1Of examined,In
R12477 T18828 T18826 arg1Of examined,","
R12478 T18828 T18831 arg1Of examined,after
R12479 T18828 T18837 arg1Of examined,in
R12480 T18830 T18828 arg2Of phosphorylation,examined
R12481 T18830 T18829 arg1Of phosphorylation,Akt
R12482 T18832 T18831 arg2Of inhibition,after
R12483 T18832 T18833 arg1Of inhibition,of
R12484 T18836 T18833 arg2Of kinase,of
R12485 T18836 T18834 arg1Of kinase,a
R12486 T18836 T18835 arg1Of kinase,downstream
R12487 T18839 T18837 arg2Of pathway,in
R12488 T18839 T18838 arg1Of pathway,the
R12489 T18839 T18840 arg1Of pathway,","
R12490 T18841 T18840 arg2Of JNK,","

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19379 48-51 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T19335 48-51 http://www.uniprot.org/uniprot/P31749 denotes Akt
T19357 48-51 http://www.uniprot.org/uniprot/P31751 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T18447 52-67 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T18416 124-127 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T18473 124-127 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T18323 0-128 Sentence denotes In order to further test our model, we examined Akt phosphorylation after inhibition of a downstream kinase in the pathway, JNK.
T244 0-128 Sentence denotes In order to further test our model, we examined Akt phosphorylation after inhibition of a downstream kinase in the pathway, JNK.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19889 36-100 Phosphorylation denotes we examined Akt phosphorylation after inhibition of a downstream
T19875 101-127 Protein denotes kinase in the pathway, JNK
T19860 48-51 Protein denotes Akt
T19796 111-127 Protein denotes the pathway, JNK
R13144 T19860 T19889 themeOf Akt,we examined Akt phosphorylation after inhibition of a downstream

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20238 127-128 . denotes .
T20237 124-127 NNP denotes JNK
T20236 122-123 , denotes ,
T20235 115-122 NN denotes pathway
T20234 111-114 DT denotes the
T20233 108-110 IN denotes in
T20232 101-107 NN denotes kinase
T20231 90-100 JJ denotes downstream
T20230 88-89 DT denotes a
T20229 85-87 IN denotes of
T20228 74-84 NN denotes inhibition
T20227 68-73 IN denotes after
T20226 52-67 NN denotes phosphorylation
T20225 48-51 NNP denotes Akt
T20224 39-47 VBD denotes examined
T20223 36-38 PRP denotes we
T20222 34-35 , denotes ,
T20221 29-34 NN denotes model
T20220 25-28 PRP$ denotes our
T20219 20-24 NN denotes test
T20218 12-19 JJ denotes further
T20217 9-11 TO denotes to
T20216 3-8 NN denotes order
T20215 0-2 IN denotes In
R13466 T20215 T20219 prep In,test
R13467 T20216 T20215 pobj order,In
R13468 T20217 T20219 aux to,test
R13469 T20218 T20219 advmod further,test
R13470 T20219 T20224 advcl test,examined
R13471 T20220 T20221 poss our,model
R13472 T20221 T20219 dobj model,test
R13473 T20222 T20224 punct ",",examined
R13474 T20223 T20224 nsubj we,examined
R13475 T20224 T20224 ROOT examined,examined
R13476 T20225 T20226 compound Akt,phosphorylation
R13477 T20226 T20224 dobj phosphorylation,examined
R13478 T20227 T20224 prep after,examined
R13479 T20228 T20227 pobj inhibition,after
R13480 T20229 T20228 prep of,inhibition
R13481 T20230 T20232 det a,kinase
R13482 T20231 T20232 amod downstream,kinase
R13483 T20232 T20229 pobj kinase,of
R13484 T20233 T20232 prep in,kinase
R13485 T20234 T20235 det the,pathway
R13486 T20235 T20233 pobj pathway,in
R13487 T20236 T20235 punct ",",pathway
R13488 T20237 T20235 appos JNK,pathway
R13489 T20238 T20224 punct .,examined

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19604 39-47 Positive_regulation denotes examined
T19603 74-84 Negative_regulation denotes inhibition
T19602 52-67 Phosphorylation denotes phosphorylation
T19601 124-127 Protein denotes JNK
T19600 48-51 Protein denotes Akt
R13034 T19600 T19602 themeOf Akt,phosphorylation
R13035 T19601 T19603 themeOf JNK,inhibition
R13036 T19602 T19604 themeOf phosphorylation,examined

test3

Id Subject Object Predicate Lexical cue
T18269 52-67 Phosphorylation denotes phosphorylation