> top > docs > PMC:3585731 > spans > 39088-39364 > annotations

PMC:3585731 / 39088-39364 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T18161 209-213 Protein denotes TNFα
T18160 82-86 Protein denotes RIP1
T18197 36-46 Positive_regulation denotes activation

2_test

Id Subject Object Predicate Lexical cue
23469174-22695613-90505454 272-274 22695613 denotes 15

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18818 274-275 -RRB- denotes ]
T18817 272-274 CD denotes 15
T18816 271-272 -LRB- denotes [
T18815 265-270 NN denotes cells
T18814 260-264 NN denotes L929
T18813 257-259 IN denotes in
T18812 245-256 NN denotes necroptosis
T18811 242-244 IN denotes in
T18810 236-241 NN denotes event
T18809 227-235 JJ denotes critical
T18808 225-226 DT denotes a
T18807 223-224 -COMMA- denotes ,
T18806 214-223 NN denotes synthesis
T18805 209-213 NN denotes TNFα
T18804 199-208 JJ denotes autocrine
T18803 195-198 CC denotes and
T18802 184-194 NN denotes activation
T18801 180-183 NN denotes JNK
T18800 178-179 -COMMA- denotes ,
T18799 172-178 RB denotes namely
T18798 170-171 -COMMA- denotes ,
T18797 165-170 NN denotes cells
T18796 160-164 NN denotes L929
T18795 148-159 JJ denotes necroptotic
T18794 145-147 IN denotes in
T18793 138-144 NN denotes events
T18792 128-137 NN denotes execution
T18791 124-127 CC denotes and
T18790 114-123 NN denotes signaling
T18789 103-113 JJ denotes downstream
T18788 97-102 VB denotes known
T18787 94-96 TO denotes to
T18786 87-93 NN denotes kinase
T18785 82-86 NN denotes RIP1
T18784 71-81 VB denotes connecting
T18783 66-70 NN denotes link
T18782 58-65 JJ denotes pivotal
T18781 56-57 DT denotes a
T18780 47-55 VB denotes provides
T18779 36-46 NN denotes activation
T18778 32-35 NN denotes Akt
T18777 27-31 IN denotes that
T18776 17-26 VB denotes suggested
T18775 12-16 NN denotes data
T18774 8-11 PRP-DOLLAR- denotes our
T18773 6-7 -COMMA- denotes ,
T18772 0-6 RB denotes Second
R12421 T18775 T18774 arg1Of data,our
R12422 T18775 T18776 arg1Of data,suggested
R12423 T18776 T18772 arg1Of suggested,Second
R12424 T18776 T18773 arg1Of suggested,","
R12425 T18779 T18778 arg1Of activation,Akt
R12426 T18779 T18780 arg1Of activation,provides
R12427 T18780 T18776 arg2Of provides,suggested
R12428 T18780 T18777 arg1Of provides,that
R12429 T18783 T18780 arg2Of link,provides
R12430 T18783 T18781 arg1Of link,a
R12431 T18783 T18782 arg1Of link,pivotal
R12432 T18783 T18784 arg1Of link,connecting
R12433 T18786 T18784 arg2Of kinase,connecting
R12434 T18786 T18785 arg1Of kinase,RIP1
R12435 T18786 T18787 arg1Of kinase,to
R12436 T18790 T18791 arg1Of signaling,and
R12437 T18792 T18791 arg2Of execution,and
R12438 T18793 T18787 arg2Of events,to
R12439 T18793 T18788 arg2Of events,known
R12440 T18793 T18789 arg1Of events,downstream
R12441 T18793 T18790 arg1Of events,signaling
R12442 T18793 T18792 arg1Of events,execution
R12443 T18793 T18794 arg1Of events,in
R12444 T18793 T18798 arg1Of events,","
R12445 T18793 T18799 arg1Of events,namely
R12446 T18793 T18800 arg1Of events,","
R12447 T18793 T18807 arg1Of events,","
R12448 T18797 T18794 arg2Of cells,in
R12449 T18797 T18795 arg1Of cells,necroptotic
R12450 T18797 T18796 arg1Of cells,L929
R12451 T18802 T18801 arg1Of activation,JNK
R12452 T18802 T18803 arg1Of activation,and
R12453 T18803 T18800 arg2Of and,","
R12454 T18806 T18803 arg2Of synthesis,and
R12455 T18806 T18804 arg1Of synthesis,autocrine
R12456 T18806 T18805 arg1Of synthesis,TNFα
R12457 T18810 T18807 arg2Of event,","
R12458 T18810 T18808 arg1Of event,a
R12459 T18810 T18809 arg1Of event,critical
R12460 T18810 T18811 arg1Of event,in
R12461 T18810 T18813 arg1Of event,in
R12462 T18810 T18816 arg1Of event,[
R12463 T18812 T18811 arg2Of necroptosis,in
R12464 T18815 T18813 arg2Of cells,in
R12465 T18815 T18814 arg1Of cells,L929
R12466 T18817 T18816 arg2Of 15,[
R12467 T18818 T18816 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18395 209-213 Protein denotes TNFα
T18394 82-86 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19385 209-213 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T19378 32-35 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T19334 32-35 http://www.uniprot.org/uniprot/P31749 denotes Akt
T19318 82-86 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T19356 32-35 http://www.uniprot.org/uniprot/P31751 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T18467 214-223 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T18439 245-256 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T18430 245-256 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T18424 114-123 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T18415 180-183 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T18472 180-183 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T18484 265-270 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18483 165-170 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T18322 0-276 Sentence denotes Second, our data suggested that Akt activation provides a pivotal link connecting RIP1 kinase to known downstream signaling and execution events in necroptotic L929 cells, namely, JNK activation and autocrine TNFα synthesis, a critical event in necroptosis in L929 cells [15].
T243 0-276 Sentence denotes Second, our data suggested that Akt activation provides a pivotal link connecting RIP1 kinase to known downstream signaling and execution events in necroptotic L929 cells, namely, JNK activation and autocrine TNFα synthesis, a critical event in necroptosis in L929 cells [15].

simple1

Id Subject Object Predicate Lexical cue
T18498 209-213 Protein denotes TNFα
T18497 82-86 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19297 214-223 Gene_expression denotes synthesis
T19274 82-86 Protein denotes RIP1
T19275 209-213 Protein denotes TNFα
R12908 T19275 T19297 themeOf TNFα,synthesis

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19498 209-213 Protein denotes TNFα
T19497 82-86 Protein denotes RIP1
T19520 214-223 Gene_expression denotes synthesis
R12977 T19498 T19520 themeOf TNFα,synthesis

DLUT931

Id Subject Object Predicate Lexical cue
T19431 214-223 Gene_expression denotes synthesis
T19430 71-81 Positive_regulation denotes connecting
T19406 209-213 Protein denotes TNFα
T19405 82-86 Protein denotes RIP1
R12936 T19405 T19430 themeOf RIP1,connecting
R12937 T19406 T19431 themeOf TNFα,synthesis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19884 180-194 Positive_regulation denotes JNK activation
T19874 199-223 Protein denotes autocrine TNFα synthesis
T19851 82-86 Protein denotes RIP1
T19843 260-275 Entity denotes L929 cells [15]
T19811 82-123 Protein denotes RIP1 kinase to known downstream signaling
T19810 180-183 Protein denotes JNK
T19799 27-35 Protein denotes that Akt
T19789 160-164 Entity denotes L929
T19783 148-170 Entity denotes necroptotic L929 cells
R13131 T19810 T19884 themeOf JNK,JNK activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20214 275-276 . denotes .
T20213 274-275 NNP denotes ]
T20212 272-274 CD denotes 15
T20211 271-272 NNP denotes [
T20210 265-270 NNS denotes cells
T20209 260-264 NNP denotes L929
T20208 257-259 IN denotes in
T20207 245-256 NN denotes necroptosis
T20206 242-244 IN denotes in
T20205 236-241 NN denotes event
T20204 227-235 JJ denotes critical
T20203 225-226 DT denotes a
T20202 223-224 , denotes ,
T20201 214-223 NN denotes synthesis
T20200 209-213 NNP denotes TNFα
T20199 199-208 NN denotes autocrine
T20198 195-198 CC denotes and
T20197 184-194 NN denotes activation
T20196 180-183 NNP denotes JNK
T20195 178-179 , denotes ,
T20194 172-178 RB denotes namely
T20193 170-171 , denotes ,
T20192 165-170 NNS denotes cells
T20191 160-164 NNP denotes L929
T20190 148-159 JJ denotes necroptotic
T20189 145-147 IN denotes in
T20188 138-144 NNS denotes events
T20187 128-137 NN denotes execution
T20186 124-127 CC denotes and
T20185 114-123 VBG denotes signaling
T20184 103-113 JJ denotes downstream
T20183 97-102 VBN denotes known
T20182 94-96 TO denotes to
T20181 87-93 NN denotes kinase
T20180 82-86 CD denotes RIP1
T20179 71-81 VBG denotes connecting
T20178 66-70 NN denotes link
T20177 58-65 JJ denotes pivotal
T20176 56-57 DT denotes a
T20175 47-55 VBZ denotes provides
T20174 36-46 NN denotes activation
T20173 32-35 NNP denotes Akt
T20172 27-31 IN denotes that
T20171 17-26 VBD denotes suggested
T20170 12-16 NNS denotes data
T20169 8-11 PRP$ denotes our
T20168 6-7 , denotes ,
T20167 0-6 NNP denotes Second
R13418 T20167 T20171 advmod Second,suggested
R13419 T20168 T20171 punct ",",suggested
R13420 T20169 T20170 poss our,data
R13421 T20170 T20171 nsubj data,suggested
R13422 T20171 T20171 ROOT suggested,suggested
R13423 T20172 T20175 mark that,provides
R13424 T20173 T20174 compound Akt,activation
R13425 T20174 T20175 nsubj activation,provides
R13426 T20175 T20171 ccomp provides,suggested
R13427 T20176 T20178 det a,link
R13428 T20177 T20178 amod pivotal,link
R13429 T20178 T20175 dobj link,provides
R13430 T20179 T20178 acl connecting,link
R13431 T20180 T20181 nummod RIP1,kinase
R13432 T20181 T20179 dobj kinase,connecting
R13433 T20182 T20179 prep to,connecting
R13434 T20183 T20185 amod known,signaling
R13435 T20184 T20185 amod downstream,signaling
R13436 T20185 T20182 pobj signaling,to
R13437 T20186 T20185 cc and,signaling
R13438 T20187 T20188 compound execution,events
R13439 T20188 T20185 conj events,signaling
R13440 T20189 T20188 prep in,events
R13441 T20190 T20192 amod necroptotic,cells
R13442 T20191 T20192 compound L929,cells
R13443 T20192 T20189 pobj cells,in
R13444 T20193 T20192 punct ",",cells
R13445 T20194 T20197 advmod namely,activation
R13446 T20195 T20197 punct ",",activation
R13447 T20196 T20197 compound JNK,activation
R13448 T20197 T20192 conj activation,cells
R13449 T20198 T20197 cc and,activation
R13450 T20199 T20197 conj autocrine,activation
R13451 T20200 T20201 compound TNFα,synthesis
R13452 T20201 T20197 conj synthesis,activation
R13453 T20202 T20197 punct ",",activation
R13454 T20203 T20205 det a,event
R13455 T20204 T20205 amod critical,event
R13456 T20205 T20197 conj event,activation
R13457 T20206 T20205 prep in,event
R13458 T20207 T20206 pobj necroptosis,in
R13459 T20208 T20205 prep in,event
R13460 T20209 T20210 compound L929,cells
R13461 T20210 T20208 pobj cells,in
R13462 T20211 T20213 nmod [,]
R13463 T20212 T20213 nummod 15,]
R13464 T20213 T20205 appos ],event
R13465 T20214 T20171 punct .,suggested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19599 184-194 Positive_regulation denotes activation
T19598 71-81 Positive_regulation denotes connecting
T19597 214-223 Gene_expression denotes synthesis
T19596 184-194 Positive_regulation denotes activation
T19595 36-46 Positive_regulation denotes activation
T19594 199-213 Protein denotes autocrine TNFα
T19593 180-183 Protein denotes JNK
T19592 82-93 Protein denotes RIP1 kinase
T19591 32-35 Protein denotes Akt
R13029 T19591 T19595 themeOf Akt,activation
R13030 T19593 T19596 themeOf JNK,activation
R13031 T19594 T19597 themeOf autocrine TNFα,synthesis
R13032 T19596 T19598 themeOf activation,connecting
R13033 T19597 T19599 themeOf synthesis,activation

test3

Id Subject Object Predicate Lexical cue
T18268 214-223 Gene_expression denotes synthesis
T18267 209-213 Protein denotes TNFα
T18266 199-208 Regulation denotes autocrine
T18265 82-86 Protein denotes RIP1
T18227 209-213 Protein denotes TNFα
T18226 82-86 Protein denotes RIP1
R12110 T18267 T18268 themeOf TNFα,synthesis
R12111 T18268 T18266 themeOf synthesis,autocrine