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PMC:3585731 / 38832-39087 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T18196 50-65 Phosphorylation denotes phosphorylation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18771 249-254 NN denotes death
T18770 244-248 NN denotes cell
T18769 241-243 TO denotes to
T18768 229-240 VB denotes contributes
T18767 227-228 -COMMA- denotes ,
T18766 223-227 NN denotes turn
T18765 220-222 IN denotes in
T18764 218-219 -COMMA- denotes ,
T18763 213-218 WDT denotes which
T18762 211-212 -COMMA- denotes ,
T18761 204-211 NN denotes pathway
T18760 197-203 NN denotes mTORC1
T18759 193-196 DT denotes the
T18758 190-192 IN denotes as
T18757 185-189 JJ denotes such
T18756 176-184 NN denotes pathways
T18755 167-175 NN denotes effector
T18754 163-166 NN denotes Akt
T18753 159-162 CC denotes and
T18752 148-158 NN denotes substrates
T18751 142-147 JJ denotes known
T18750 139-141 IN denotes of
T18749 132-138 NN denotes number
T18748 130-131 DT denotes a
T18747 122-129 IN denotes towards
T18746 113-121 NN denotes activity
T18745 109-112 PRP-DOLLAR- denotes its
T18744 100-108 VB denotes increase
T18743 97-99 TO denotes to
T18742 86-96 JJ denotes sufficient
T18741 83-85 VB denotes is
T18740 79-82 NN denotes Akt
T18739 76-78 IN denotes of
T18738 69-75 NN denotes Thr308
T18737 66-68 IN denotes of
T18736 50-65 NN denotes phosphorylation
T18735 38-49 JJ denotes necroptotic
T18734 28-37 JJ denotes selective
T18733 23-27 IN denotes that
T18732 10-22 VB denotes demonstrated
T18731 7-9 PRP denotes we
T18730 5-6 -COMMA- denotes ,
T18729 0-5 RB denotes First
R12377 T18731 T18732 arg1Of we,demonstrated
R12378 T18732 T18729 arg1Of demonstrated,First
R12379 T18732 T18730 arg1Of demonstrated,","
R12380 T18736 T18734 arg1Of phosphorylation,selective
R12381 T18736 T18735 arg1Of phosphorylation,necroptotic
R12382 T18736 T18737 arg1Of phosphorylation,of
R12383 T18736 T18741 arg1Of phosphorylation,is
R12384 T18736 T18742 arg1Of phosphorylation,sufficient
R12385 T18736 T18744 arg1Of phosphorylation,increase
R12386 T18738 T18737 arg2Of Thr308,of
R12387 T18738 T18739 arg1Of Thr308,of
R12388 T18740 T18739 arg2Of Akt,of
R12389 T18741 T18732 arg2Of is,demonstrated
R12390 T18741 T18733 arg1Of is,that
R12391 T18742 T18741 arg2Of sufficient,is
R12392 T18744 T18742 arg2Of increase,sufficient
R12393 T18744 T18743 arg1Of increase,to
R12394 T18744 T18747 arg1Of increase,towards
R12395 T18746 T18744 arg2Of activity,increase
R12396 T18746 T18745 arg1Of activity,its
R12397 T18749 T18747 arg2Of number,towards
R12398 T18749 T18748 arg1Of number,a
R12399 T18749 T18750 arg1Of number,of
R12400 T18749 T18758 arg1Of number,as
R12401 T18752 T18751 arg1Of substrates,known
R12402 T18752 T18753 arg1Of substrates,and
R12403 T18753 T18750 arg2Of and,of
R12404 T18756 T18753 arg2Of pathways,and
R12405 T18756 T18754 arg1Of pathways,Akt
R12406 T18756 T18755 arg1Of pathways,effector
R12407 T18758 T18757 arg1Of as,such
R12408 T18761 T18758 arg2Of pathway,as
R12409 T18761 T18759 arg1Of pathway,the
R12410 T18761 T18760 arg1Of pathway,mTORC1
R12411 T18761 T18762 arg1Of pathway,","
R12412 T18761 T18763 arg1Of pathway,which
R12413 T18761 T18768 arg1Of pathway,contributes
R12414 T18766 T18765 arg2Of turn,in
R12415 T18768 T18764 arg1Of contributes,","
R12416 T18768 T18765 arg1Of contributes,in
R12417 T18768 T18767 arg1Of contributes,","
R12418 T18768 T18769 arg1Of contributes,to
R12419 T18771 T18769 arg2Of death,to
R12420 T18771 T18770 arg1Of death,cell

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19377 163-166 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T19376 79-82 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T19354 79-82 http://www.uniprot.org/uniprot/P31751 denotes Akt
T19333 163-166 http://www.uniprot.org/uniprot/P31749 denotes Akt
T19332 79-82 http://www.uniprot.org/uniprot/P31749 denotes Akt
T19355 163-166 http://www.uniprot.org/uniprot/P31751 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T18464 249-254 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T18461 244-254 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T18446 50-65 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T18490 197-203 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T18321 0-255 Sentence denotes First, we demonstrated that selective necroptotic phosphorylation of Thr308 of Akt is sufficient to increase its activity towards a number of known substrates and Akt effector pathways such as the mTORC1 pathway, which, in turn, contributes to cell death.
T242 0-255 Sentence denotes First, we demonstrated that selective necroptotic phosphorylation of Thr308 of Akt is sufficient to increase its activity towards a number of known substrates and Akt effector pathways such as the mTORC1 pathway, which, in turn, contributes to cell death.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19890 28-82 Phosphorylation denotes selective necroptotic phosphorylation of Thr308 of Akt
T19858 167-192 Entity denotes effector pathways such as
T19849 139-158 Entity denotes of known substrates
T19831 66-82 Entity denotes of Thr308 of Akt
T19802 193-211 Entity denotes the mTORC1 pathway
T19795 163-166 Protein denotes Akt
T19776 79-82 Protein denotes Akt
R13123 T19776 T19890 themeOf Akt,selective necroptotic phosphorylation of Thr308 of Akt
R13134 T19831 T19776 partOf of Thr308 of Akt,Akt
R13135 T19831 T19890 siteOf of Thr308 of Akt,selective necroptotic phosphorylation of Thr308 of Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20166 254-255 . denotes .
T20165 249-254 NN denotes death
T20164 244-248 NN denotes cell
T20163 241-243 TO denotes to
T20162 229-240 VBZ denotes contributes
T20161 227-228 , denotes ,
T20160 223-227 NN denotes turn
T20159 220-222 IN denotes in
T20158 218-219 , denotes ,
T20157 213-218 WDT denotes which
T20156 211-212 , denotes ,
T20155 204-211 NN denotes pathway
T20154 197-203 NNP denotes mTORC1
T20153 193-196 DT denotes the
T20152 190-192 IN denotes as
T20151 185-189 JJ denotes such
T20150 176-184 NNS denotes pathways
T20149 167-175 NN denotes effector
T20148 163-166 NNP denotes Akt
T20147 159-162 CC denotes and
T20146 148-158 NNS denotes substrates
T20145 142-147 VBN denotes known
T20144 139-141 IN denotes of
T20143 132-138 NN denotes number
T20142 130-131 DT denotes a
T20141 122-129 IN denotes towards
T20140 113-121 NN denotes activity
T20139 109-112 PRP$ denotes its
T20138 100-108 VB denotes increase
T20137 97-99 TO denotes to
T20136 86-96 JJ denotes sufficient
T20135 83-85 VBZ denotes is
T20134 79-82 NNP denotes Akt
T20133 76-78 IN denotes of
T20132 69-75 CD denotes Thr308
T20131 66-68 IN denotes of
T20130 50-65 NN denotes phosphorylation
T20129 38-49 JJ denotes necroptotic
T20128 28-37 JJ denotes selective
T20127 23-27 IN denotes that
T20126 10-22 VBD denotes demonstrated
T20125 7-9 PRP denotes we
T20124 5-6 , denotes ,
T20123 0-5 RB denotes First
R13374 T20123 T20126 advmod First,demonstrated
R13375 T20124 T20126 punct ",",demonstrated
R13376 T20125 T20126 nsubj we,demonstrated
R13377 T20126 T20126 ROOT demonstrated,demonstrated
R13378 T20127 T20135 mark that,is
R13379 T20128 T20130 amod selective,phosphorylation
R13380 T20129 T20130 amod necroptotic,phosphorylation
R13381 T20130 T20135 nsubj phosphorylation,is
R13382 T20131 T20130 prep of,phosphorylation
R13383 T20132 T20131 pobj Thr308,of
R13384 T20133 T20132 prep of,Thr308
R13385 T20134 T20133 pobj Akt,of
R13386 T20135 T20126 ccomp is,demonstrated
R13387 T20136 T20135 acomp sufficient,is
R13388 T20137 T20138 aux to,increase
R13389 T20138 T20136 xcomp increase,sufficient
R13390 T20139 T20140 poss its,activity
R13391 T20140 T20138 dobj activity,increase
R13392 T20141 T20138 prep towards,increase
R13393 T20142 T20143 det a,number
R13394 T20143 T20141 pobj number,towards
R13395 T20144 T20143 prep of,number
R13396 T20145 T20146 amod known,substrates
R13397 T20146 T20144 pobj substrates,of
R13398 T20147 T20146 cc and,substrates
R13399 T20148 T20150 nmod Akt,pathways
R13400 T20149 T20150 compound effector,pathways
R13401 T20150 T20146 conj pathways,substrates
R13402 T20151 T20152 amod such,as
R13403 T20152 T20150 prep as,pathways
R13404 T20153 T20155 det the,pathway
R13405 T20154 T20155 compound mTORC1,pathway
R13406 T20155 T20152 pobj pathway,as
R13407 T20156 T20155 punct ",",pathway
R13408 T20157 T20162 nsubj which,contributes
R13409 T20158 T20162 punct ",",contributes
R13410 T20159 T20162 prep in,contributes
R13411 T20160 T20159 pobj turn,in
R13412 T20161 T20162 punct ",",contributes
R13413 T20162 T20143 relcl contributes,number
R13414 T20163 T20162 prep to,contributes
R13415 T20164 T20165 compound cell,death
R13416 T20165 T20163 pobj death,to
R13417 T20166 T20126 punct .,demonstrated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19590 50-65 Phosphorylation denotes phosphorylation
T19589 50-65 Phosphorylation denotes phosphorylation
T19588 197-203 Protein denotes mTORC1
T19587 79-82 Protein denotes Akt
T19586 69-75 Protein denotes Thr308
R13027 T19586 T19589 themeOf Thr308,phosphorylation
R13028 T19587 T19590 themeOf Akt,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T18264 50-65 Phosphorylation denotes phosphorylation