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PMC:3585731 / 38203-38555 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T32289 220-235 Phosphorylation denotes phosphorylation
T32288 210-215 Positive_regulation denotes leads
T32287 168-178 Positive_regulation denotes Activation
T32286 4-19 Phosphorylation denotes phosphorylation
T32285 152-156 Protein denotes TNFα
T32284 94-98 Protein denotes RIP1
R22253 T32289 T32288 themeOf phosphorylation,leads

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T32399 346-351 NN denotes cells
T32398 341-345 NN denotes L929
T32397 338-340 IN denotes in
T32396 332-337 NN denotes death
T32395 320-331 JJ denotes necroptotic
T32394 317-319 IN denotes of
T32393 307-316 NN denotes execution
T32392 303-306 DT denotes the
T32391 300-302 TO denotes to
T32390 289-299 VB denotes contribute
T32389 283-288 WDT denotes which
T32388 281-282 -COMMA- denotes ,
T32387 277-281 NN denotes mTOR
T32386 274-276 IN denotes as
T32385 269-273 JJ denotes such
T32384 267-268 -COMMA- denotes ,
T32383 257-267 NN denotes substrates
T32382 253-256 NN denotes Akt
T32381 247-252 VB denotes known
T32380 239-246 JJ denotes several
T32379 236-238 IN denotes of
T32378 220-235 NN denotes phosphorylation
T32377 216-219 DT denotes the
T32376 210-215 VB denotes leads
T32375 205-209 RB denotes also
T32374 193-204 NN denotes necroptosis
T32373 186-192 IN denotes during
T32372 182-185 NN denotes Akt
T32371 179-181 IN denotes of
T32370 168-178 NN denotes Activation
T32369 157-166 NN denotes synthesis
T32368 152-156 NN denotes TNFα
T32367 149-151 TO denotes to
T32366 143-148 VB denotes leads
T32365 132-142 NN denotes activation
T32364 128-131 NN denotes JNK
T32363 126-127 -COMMA- denotes ,
T32362 123-126 NN denotes Akt
T32361 118-122 IN denotes from
T32360 107-117 NN denotes Downstream
T32359 99-105 NN denotes kinase
T32358 94-98 NN denotes RIP1
T32357 90-93 CC denotes and
T32356 82-89 NN denotes factors
T32355 75-81 NN denotes growth
T32354 70-74 DT denotes both
T32353 65-69 IN denotes from
T32352 58-64 NN denotes inputs
T32351 49-57 VB denotes requires
T32350 37-48 NN denotes necroptosis
T32349 30-36 IN denotes during
T32348 23-29 NN denotes Thr308
T32347 20-22 IN denotes at
T32346 4-19 NN denotes phosphorylation
T32345 0-3 NN denotes Akt
R22271 T32346 T32345 arg1Of phosphorylation,Akt
R22272 T32346 T32347 arg1Of phosphorylation,at
R22273 T32346 T32349 arg1Of phosphorylation,during
R22274 T32346 T32351 arg1Of phosphorylation,requires
R22275 T32348 T32347 arg2Of Thr308,at
R22276 T32350 T32349 arg2Of necroptosis,during
R22277 T32352 T32351 arg2Of inputs,requires
R22278 T32352 T32353 arg1Of inputs,from
R22279 T32356 T32355 arg1Of factors,growth
R22280 T32356 T32357 arg1Of factors,and
R22281 T32357 T32353 arg2Of and,from
R22282 T32357 T32354 arg1Of and,both
R22283 T32359 T32357 arg2Of kinase,and
R22284 T32359 T32358 arg1Of kinase,RIP1
R22285 T32360 T32361 arg1Of Downstream,from
R22286 T32362 T32361 arg2Of Akt,from
R22287 T32365 T32364 arg1Of activation,JNK
R22288 T32365 T32366 arg1Of activation,leads
R22289 T32366 T32360 arg1Of leads,Downstream
R22290 T32366 T32363 arg1Of leads,","
R22291 T32366 T32367 arg1Of leads,to
R22292 T32369 T32367 arg2Of synthesis,to
R22293 T32369 T32368 arg1Of synthesis,TNFα
R22294 T32370 T32371 arg1Of Activation,of
R22295 T32370 T32373 arg1Of Activation,during
R22296 T32370 T32376 arg1Of Activation,leads
R22297 T32372 T32371 arg2Of Akt,of
R22298 T32374 T32373 arg2Of necroptosis,during
R22299 T32376 T32375 arg1Of leads,also
R22300 T32378 T32376 arg2Of phosphorylation,leads
R22301 T32378 T32377 arg1Of phosphorylation,the
R22302 T32378 T32379 arg1Of phosphorylation,of
R22303 T32383 T32379 arg2Of substrates,of
R22304 T32383 T32380 arg1Of substrates,several
R22305 T32383 T32381 arg2Of substrates,known
R22306 T32383 T32382 arg1Of substrates,Akt
R22307 T32383 T32384 arg1Of substrates,","
R22308 T32383 T32386 arg1Of substrates,as
R22309 T32386 T32385 arg1Of as,such
R22310 T32387 T32386 arg2Of mTOR,as
R22311 T32387 T32388 arg1Of mTOR,","
R22312 T32387 T32389 arg1Of mTOR,which
R22313 T32387 T32390 arg1Of mTOR,contribute
R22314 T32390 T32391 arg1Of contribute,to
R22315 T32393 T32391 arg2Of execution,to
R22316 T32393 T32392 arg1Of execution,the
R22317 T32393 T32394 arg1Of execution,of
R22318 T32393 T32397 arg1Of execution,in
R22319 T32396 T32394 arg2Of death,of
R22320 T32396 T32395 arg1Of death,necroptotic
R22321 T32399 T32397 arg2Of cells,in
R22322 T32399 T32398 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T32312 152-156 Protein denotes TNFα
T32311 94-98 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T32426 277-281 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T32425 152-156 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T32424 253-256 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T32423 182-185 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T32422 123-126 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T32421 0-3 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T32419 253-256 http://www.uniprot.org/uniprot/P31751 denotes Akt
T32418 182-185 http://www.uniprot.org/uniprot/P31751 denotes Akt
T32417 123-126 http://www.uniprot.org/uniprot/P31751 denotes Akt
T32416 0-3 http://www.uniprot.org/uniprot/P31751 denotes Akt
T32414 253-256 http://www.uniprot.org/uniprot/P31749 denotes Akt
T32413 182-185 http://www.uniprot.org/uniprot/P31749 denotes Akt
T32412 123-126 http://www.uniprot.org/uniprot/P31749 denotes Akt
T32411 0-3 http://www.uniprot.org/uniprot/P31749 denotes Akt
T32409 94-98 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T32324 332-337 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T32323 157-166 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T32322 75-81 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T32321 193-204 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T32320 37-48 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T32319 193-204 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T32318 37-48 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T32317 220-235 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T32316 4-19 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T32314 128-131 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T32326 128-131 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T32328 346-351 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T32304 168-352 Sentence denotes Activation of Akt during necroptosis also leads the phosphorylation of several known Akt substrates, such as mTOR, which contribute to the execution of necroptotic death in L929 cells.
T32303 107-167 Sentence denotes Downstream from Akt, JNK activation leads to TNFα synthesis.
T32302 0-106 Sentence denotes Akt phosphorylation at Thr308 during necroptosis requires inputs from both growth factors and RIP1 kinase.
T237 0-106 Sentence denotes Akt phosphorylation at Thr308 during necroptosis requires inputs from both growth factors and RIP1 kinase.
T238 107-167 Sentence denotes Downstream from Akt, JNK activation leads to TNFα synthesis.
T239 168-352 Sentence denotes Activation of Akt during necroptosis also leads the phosphorylation of several known Akt substrates, such as mTOR, which contribute to the execution of necroptotic death in L929 cells.

simple1

Id Subject Object Predicate Lexical cue
T32331 152-156 Protein denotes TNFα
T32330 94-98 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T32407 157-166 Gene_expression denotes synthesis
T32406 143-148 Positive_regulation denotes leads
T32405 152-156 Protein denotes TNFα
T32404 94-98 Protein denotes RIP1
R22323 T32405 T32407 themeOf TNFα,synthesis
R22324 T32407 T32406 themeOf synthesis,leads

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T32439 143-148 Positive_regulation denotes leads
T32438 157-166 Gene_expression denotes synthesis
T32437 152-156 Protein denotes TNFα
T32436 94-98 Protein denotes RIP1
R22327 T32437 T32438 themeOf TNFα,synthesis
R22328 T32438 T32439 themeOf synthesis,leads

DLUT931

Id Subject Object Predicate Lexical cue
T32431 143-148 Positive_regulation denotes leads
T32430 157-166 Gene_expression denotes synthesis
T32429 152-156 Protein denotes TNFα
T32428 94-98 Protein denotes RIP1
R22325 T32429 T32430 themeOf TNFα,synthesis
R22326 T32430 T32431 themeOf synthesis,leads

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T32572 216-281 Phosphorylation denotes the phosphorylation of several known Akt substrates, such as mTOR
T32571 0-48 Phosphorylation denotes Akt phosphorylation at Thr308 during necroptosis
T32570 0-105 Regulation denotes Akt phosphorylation at Thr308 during necroptosis requires inputs from both growth factors and RIP1 kinase
T32569 168-204 Positive_regulation denotes Activation of Akt during necroptosis
T32567 123-127 Protein denotes Akt,
T32566 236-281 Protein denotes of several known Akt substrates, such as mTOR
T32564 179-185 Protein denotes of Akt
T32562 239-276 Entity denotes several known Akt substrates, such as
T32561 149-166 Protein denotes to TNFα synthesis
T32560 0-3 Protein denotes Akt
T32559 23-29 Entity denotes Thr308
T32558 253-256 Protein denotes Akt
T32556 94-98 Protein denotes RIP1
T32555 123-142 Protein denotes Akt, JNK activation
T32553 94-105 Protein denotes RIP1 kinase
R22424 T32559 T32560 partOf Thr308,Akt
R22425 T32559 T32571 siteOf Thr308,Akt phosphorylation at Thr308 during necroptosis
R22426 T32560 T32571 themeOf Akt,Akt phosphorylation at Thr308 during necroptosis
R22427 T32564 T32569 themeOf of Akt,Activation of Akt during necroptosis
R22428 T32566 T32572 themeOf "of several known Akt substrates, such as mTOR","the phosphorylation of several known Akt substrates, such as mTOR"
R22429 T32571 T32570 themeOf Akt phosphorylation at Thr308 during necroptosis,Akt phosphorylation at Thr308 during necroptosis requires inputs from both growth factors and RIP1 kinase

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T32515 267-268 , denotes ,
T32514 257-267 VBZ denotes substrates
T32513 253-256 NNP denotes Akt
T32512 247-252 VBN denotes known
T32511 239-246 JJ denotes several
T32510 236-238 IN denotes of
T32509 220-235 NN denotes phosphorylation
T32508 216-219 DT denotes the
T32507 210-215 VBZ denotes leads
T32506 205-209 RB denotes also
T32505 193-204 NN denotes necroptosis
T32504 186-192 IN denotes during
T32503 182-185 NNP denotes Akt
T32502 179-181 IN denotes of
T32501 168-178 NNP denotes Activation
T32500 166-167 . denotes .
T32499 157-166 NN denotes synthesis
T32498 152-156 VB denotes TNFα
T32497 149-151 TO denotes to
T32496 143-148 VBZ denotes leads
T32495 132-142 NN denotes activation
T32494 128-131 NNP denotes JNK
T32493 126-127 , denotes ,
T32492 123-126 NNP denotes Akt
T32491 118-122 IN denotes from
T32490 107-117 NNP denotes Downstream
T32489 105-106 . denotes .
T32488 99-105 NN denotes kinase
T32487 94-98 CD denotes RIP1
T32486 90-93 CC denotes and
T32485 82-89 NNS denotes factors
T32484 75-81 NN denotes growth
T32483 70-74 DT denotes both
T32482 65-69 IN denotes from
T32481 58-64 NNS denotes inputs
T32480 49-57 VBZ denotes requires
T32479 37-48 NN denotes necroptosis
T32478 30-36 IN denotes during
T32477 23-29 CD denotes Thr308
T32476 20-22 IN denotes at
T32475 4-19 NN denotes phosphorylation
T32474 0-3 NNP denotes Akt
T32531 351-352 . denotes .
T32530 346-351 NNS denotes cells
T32529 341-345 CD denotes L929
T32528 338-340 IN denotes in
T32527 332-337 NN denotes death
T32526 320-331 JJ denotes necroptotic
T32525 317-319 IN denotes of
T32524 307-316 NN denotes execution
T32523 303-306 DT denotes the
T32522 300-302 TO denotes to
T32521 289-299 VBP denotes contribute
T32520 283-288 WDT denotes which
T32519 281-282 , denotes ,
T32518 277-281 NNP denotes mTOR
T32517 274-276 IN denotes as
T32516 269-273 JJ denotes such
R22354 T32474 T32475 compound Akt,phosphorylation
R22355 T32475 T32480 nsubj phosphorylation,requires
R22356 T32476 T32475 prep at,phosphorylation
R22357 T32477 T32476 pobj Thr308,at
R22358 T32478 T32480 prep during,requires
R22359 T32479 T32478 pobj necroptosis,during
R22360 T32480 T32480 ROOT requires,requires
R22361 T32481 T32480 dobj inputs,requires
R22362 T32482 T32481 prep from,inputs
R22363 T32483 T32485 det both,factors
R22364 T32484 T32485 compound growth,factors
R22365 T32485 T32482 pobj factors,from
R22366 T32486 T32485 cc and,factors
R22367 T32487 T32488 nummod RIP1,kinase
R22368 T32488 T32485 conj kinase,factors
R22369 T32489 T32480 punct .,requires
R22370 T32490 T32496 nsubj Downstream,leads
R22371 T32491 T32490 prep from,Downstream
R22372 T32492 T32491 pobj Akt,from
R22373 T32493 T32490 punct ",",Downstream
R22374 T32494 T32495 compound JNK,activation
R22375 T32495 T32496 nsubj activation,leads
R22376 T32496 T32496 ROOT leads,leads
R22377 T32497 T32498 aux to,TNFα
R22378 T32498 T32496 xcomp TNFα,leads
R22379 T32499 T32498 dobj synthesis,TNFα
R22380 T32500 T32496 punct .,leads
R22381 T32501 T32507 nsubj Activation,leads
R22382 T32502 T32501 prep of,Activation
R22383 T32503 T32502 pobj Akt,of
R22384 T32504 T32507 prep during,leads
R22385 T32505 T32504 pobj necroptosis,during
R22386 T32506 T32507 advmod also,leads
R22387 T32507 T32507 ROOT leads,leads
R22388 T32508 T32509 det the,phosphorylation
R22389 T32509 T32507 dobj phosphorylation,leads
R22390 T32510 T32509 prep of,phosphorylation
R22391 T32511 T32514 amod several,substrates
R22392 T32512 T32514 amod known,substrates
R22393 T32513 T32514 compound Akt,substrates
R22394 T32514 T32510 pobj substrates,of
R22395 T32515 T32514 punct ",",substrates
R22396 T32516 T32517 amod such,as
R22397 T32517 T32509 prep as,phosphorylation
R22398 T32518 T32517 pobj mTOR,as
R22399 T32519 T32518 punct ",",mTOR
R22400 T32520 T32521 nsubj which,contribute
R22401 T32521 T32509 relcl contribute,phosphorylation
R22402 T32522 T32521 prep to,contribute
R22403 T32523 T32524 det the,execution
R22404 T32524 T32522 pobj execution,to
R22405 T32525 T32524 prep of,execution
R22406 T32526 T32527 amod necroptotic,death
R22407 T32527 T32525 pobj death,of
R22408 T32528 T32524 prep in,execution
R22409 T32529 T32530 nummod L929,cells
R22410 T32530 T32528 pobj cells,in
R22411 T32531 T32507 punct .,leads

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T32449 152-156 Protein denotes TNFα
T32448 128-131 Protein denotes JNK
T32447 123-126 Protein denotes Akt
T32446 49-57 Positive_regulation denotes requires
T32445 4-19 Phosphorylation denotes phosphorylation
T32444 94-105 Protein denotes RIP1 kinase
T32443 0-3 Protein denotes Akt
T32459 210-215 Positive_regulation denotes leads
T32458 210-215 Positive_regulation denotes leads
T32457 220-235 Phosphorylation denotes phosphorylation
T32456 220-235 Phosphorylation denotes phosphorylation
T32455 168-178 Positive_regulation denotes Activation
T32454 277-281 Protein denotes mTOR
T32453 253-256 Protein denotes Akt
T32452 182-185 Protein denotes Akt
T32451 157-166 Gene_expression denotes synthesis
T32450 132-142 Positive_regulation denotes activation
R22329 T32443 T32445 themeOf Akt,phosphorylation
R22330 T32445 T32446 themeOf phosphorylation,requires
R22331 T32448 T32450 themeOf JNK,activation
R22332 T32449 T32451 themeOf TNFα,synthesis
R22333 T32452 T32455 themeOf Akt,Activation
R22334 T32453 T32456 themeOf Akt,phosphorylation
R22335 T32454 T32457 themeOf mTOR,phosphorylation
R22336 T32455 T32458 causeOf Activation,leads
R22337 T32455 T32459 causeOf Activation,leads
R22338 T32456 T32458 themeOf phosphorylation,leads
R22339 T32457 T32459 themeOf phosphorylation,leads

test3

Id Subject Object Predicate Lexical cue
T32300 220-235 Phosphorylation denotes phosphorylation
T32299 210-215 Positive_regulation denotes leads
T32298 168-178 Positive_regulation denotes Activation
T32297 157-166 Gene_expression denotes synthesis
T32296 152-156 Protein denotes TNFα
T32295 94-98 Protein denotes RIP1
T32294 4-19 Phosphorylation denotes phosphorylation
T32292 152-156 Protein denotes TNFα
T32291 94-98 Protein denotes RIP1
R22254 T32296 T32297 themeOf TNFα,synthesis
R22255 T32298 T32299 causeOf Activation,leads
R22256 T32300 T32299 themeOf phosphorylation,leads