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PMC:3585731 / 36104-36261 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T16751 43-51 Negative_regulation denotes deletion
T16729 139-143 Protein denotes TNFα

2_test

Id Subject Object Predicate Lexical cue
23469174-17210696-90505453 79-81 17210696 denotes 40

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17200 148-156 NN denotes zVAD.fmk
T17199 144-147 CC denotes and
T17198 139-143 NN denotes TNFα
T17197 136-138 IN denotes of
T17196 127-135 NN denotes addition
T17195 123-126 DT denotes the
T17194 120-122 IN denotes by
T17193 112-119 VB denotes induced
T17192 106-111 NN denotes death
T17191 101-105 NN denotes cell
T17190 98-100 TO denotes to
T17189 88-97 JJ denotes resistant
T17188 83-87 VB denotes were
T17187 81-82 -RRB- denotes ]
T17186 79-81 CD denotes 40
T17185 78-79 -LRB- denotes [
T17184 69-77 NN denotes isoforms
T17183 65-68 NN denotes Akt
T17182 59-64 CD denotes three
T17181 55-58 DT denotes all
T17180 52-54 IN denotes of
T17179 43-51 NN denotes deletion
T17178 37-42 IN denotes after
T17177 29-36 VB denotes survive
T17176 26-28 TO denotes to
T17175 17-25 VB denotes selected
T17174 5-16 NN denotes fibroblasts
T17173 0-4 NN denotes Lung
R11416 T17174 T17173 arg1Of fibroblasts,Lung
R11417 T17174 T17175 arg2Of fibroblasts,selected
R11418 T17174 T17177 arg1Of fibroblasts,survive
R11419 T17174 T17188 arg1Of fibroblasts,were
R11420 T17174 T17189 arg1Of fibroblasts,resistant
R11421 T17177 T17175 arg3Of survive,selected
R11422 T17177 T17176 arg1Of survive,to
R11423 T17177 T17178 arg1Of survive,after
R11424 T17179 T17178 arg2Of deletion,after
R11425 T17179 T17180 arg1Of deletion,of
R11426 T17184 T17180 arg2Of isoforms,of
R11427 T17184 T17181 arg1Of isoforms,all
R11428 T17184 T17182 arg1Of isoforms,three
R11429 T17184 T17183 arg1Of isoforms,Akt
R11430 T17184 T17185 arg1Of isoforms,[
R11431 T17186 T17185 arg2Of 40,[
R11432 T17187 T17185 arg3Of ],[
R11433 T17189 T17188 arg2Of resistant,were
R11434 T17189 T17190 arg1Of resistant,to
R11435 T17192 T17190 arg2Of death,to
R11436 T17192 T17191 arg1Of death,cell
R11437 T17192 T17193 arg2Of death,induced
R11438 T17196 T17193 arg1Of addition,induced
R11439 T17196 T17194 arg2Of addition,by
R11440 T17196 T17195 arg1Of addition,the
R11441 T17196 T17197 arg1Of addition,of
R11442 T17198 T17199 arg1Of TNFα,and
R11443 T17199 T17197 arg2Of and,of
R11444 T17200 T17199 arg2Of zVAD.fmk,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16884 139-143 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17416 139-143 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T17406 65-68 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T17393 65-68 http://www.uniprot.org/uniprot/P31751 denotes Akt
T17380 65-68 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T16925 101-119 http://purl.obolibrary.org/obo/GO_0071888 denotes cell death induced
T16924 101-119 http://purl.obolibrary.org/obo/GO_0043276 denotes cell death induced
T16906 106-111 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T16898 101-111 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death

sentences

Id Subject Object Predicate Lexical cue
T16834 0-157 Sentence denotes Lung fibroblasts selected to survive after deletion of all three Akt isoforms [40] were resistant to cell death induced by the addition of TNFα and zVAD.fmk.
T224 0-157 Sentence denotes Lung fibroblasts selected to survive after deletion of all three Akt isoforms [40] were resistant to cell death induced by the addition of TNFα and zVAD.fmk.

simple1

Id Subject Object Predicate Lexical cue
T16944 139-143 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17350 139-143 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17883 139-143 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T17848 139-143 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18094 148-156 Entity denotes zVAD.fmk
T18071 65-68 Protein denotes Akt
T18050 0-82 Entity denotes Lung fibroblasts selected to survive after deletion of all three Akt isoforms [40]
T18037 139-143 Protein denotes TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17686 156-157 . denotes .
T17685 148-156 NNP denotes zVAD.fmk
T17684 144-147 CC denotes and
T17683 139-143 NNP denotes TNFα
T17682 136-138 IN denotes of
T17681 127-135 NN denotes addition
T17680 123-126 DT denotes the
T17679 120-122 IN denotes by
T17678 112-119 VBN denotes induced
T17677 106-111 NN denotes death
T17676 101-105 NN denotes cell
T17675 98-100 TO denotes to
T17674 88-97 JJ denotes resistant
T17673 83-87 VBD denotes were
T17672 81-82 NNP denotes ]
T17671 79-81 CD denotes 40
T17670 78-79 NNP denotes [
T17669 69-77 VBZ denotes isoforms
T17668 65-68 NNP denotes Akt
T17667 59-64 CD denotes three
T17666 55-58 DT denotes all
T17665 52-54 IN denotes of
T17664 43-51 NN denotes deletion
T17663 37-42 IN denotes after
T17662 29-36 VB denotes survive
T17661 26-28 TO denotes to
T17660 17-25 VBN denotes selected
T17659 5-16 NNS denotes fibroblasts
T17658 0-4 NN denotes Lung
R11812 T17658 T17659 compound Lung,fibroblasts
R11813 T17659 T17673 nsubj fibroblasts,were
R11814 T17660 T17659 acl selected,fibroblasts
R11815 T17661 T17662 aux to,survive
R11816 T17662 T17660 xcomp survive,selected
R11817 T17663 T17662 prep after,survive
R11818 T17664 T17663 pobj deletion,after
R11819 T17665 T17664 prep of,deletion
R11820 T17666 T17665 pobj all,of
R11821 T17667 T17669 nummod three,isoforms
R11822 T17668 T17669 nsubj Akt,isoforms
R11823 T17669 T17673 nsubj isoforms,were
R11824 T17670 T17672 nmod [,]
R11825 T17671 T17672 nummod 40,]
R11826 T17672 T17673 nsubj ],were
R11827 T17673 T17673 ROOT were,were
R11828 T17674 T17673 acomp resistant,were
R11829 T17675 T17674 prep to,resistant
R11830 T17676 T17677 compound cell,death
R11831 T17677 T17675 pobj death,to
R11832 T17678 T17677 acl induced,death
R11833 T17679 T17678 agent by,induced
R11834 T17680 T17681 det the,addition
R11835 T17681 T17679 pobj addition,by
R11836 T17682 T17681 prep of,addition
R11837 T17683 T17682 pobj TNFα,of
R11838 T17684 T17683 cc and,TNFα
R11839 T17685 T17683 conj zVAD.fmk,TNFα
R11840 T17686 T17673 punct .,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17935 148-156 Protein denotes zVAD.fmk
T17934 139-143 Protein denotes TNFα
T17933 65-68 Protein denotes Akt

test3

Id Subject Object Predicate Lexical cue
T16805 139-143 Protein denotes TNFα
T16804 112-119 Positive_regulation denotes induced
T16803 43-51 Negative_regulation denotes deletion
T16773 139-143 Protein denotes TNFα
R11158 T16803 T16804 themeOf deletion,induced