PMC:3585731 / 35333-36020
Annnotations
testone
{"project":"testone","denotations":[{"id":"T31813","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T31812","span":{"begin":393,"end":403},"obj":"Gene_expression"},{"id":"T31811","span":{"begin":365,"end":369},"obj":"Negative_regulation"},{"id":"T31810","span":{"begin":5,"end":14},"obj":"Negative_regulation"},{"id":"T31807","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T31806","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T31805","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T31804","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T31803","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T31802","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T31801","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T31800","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T31799","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T31798","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T31797","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R21995","pred":"themeOf","subj":"T31797","obj":"T31810"},{"id":"R21996","pred":"themeOf","subj":"T31798","obj":"T31810"},{"id":"R21997","pred":"themeOf","subj":"T31802","obj":"T31812"},{"id":"R21998","pred":"themeOf","subj":"T31804","obj":"T31813"},{"id":"R21999","pred":"themeOf","subj":"T31805","obj":"T31813"},{"id":"R22000","pred":"themeOf","subj":"T31806","obj":"T31813"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T32074","span":{"begin":15,"end":21},"obj":"NN"},{"id":"T32073","span":{"begin":5,"end":14},"obj":"JJ"},{"id":"T32072","span":{"begin":0,"end":4},"obj":"NN"},{"id":"T32107","span":{"begin":176,"end":178},"obj":"NN"},{"id":"T32106","span":{"begin":174,"end":175},"obj":"CD"},{"id":"T32105","span":{"begin":171,"end":173},"obj":"IN"},{"id":"T32104","span":{"begin":166,"end":170},"obj":"NN"},{"id":"T32103","span":{"begin":158,"end":165},"obj":"JJ"},{"id":"T32102","span":{"begin":156,"end":157},"obj":"-RRB-"},{"id":"T32101","span":{"begin":155,"end":156},"obj":"NN"},{"id":"T32100","span":{"begin":154,"end":155},"obj":"-LRB-"},{"id":"T32099","span":{"begin":151,"end":153},"obj":"CC"},{"id":"T32098","span":{"begin":147,"end":150},"obj":"NN"},{"id":"T32097","span":{"begin":143,"end":146},"obj":"NN"},{"id":"T32096","span":{"begin":137,"end":142},"obj":"JJ"},{"id":"T32095","span":{"begin":131,"end":136},"obj":"VB"},{"id":"T32094","span":{"begin":120,"end":130},"obj":"VB"},{"id":"T32093","span":{"begin":116,"end":119},"obj":"CC"},{"id":"T32092","span":{"begin":108,"end":115},"obj":"NN"},{"id":"T32091","span":{"begin":105,"end":107},"obj":"IN"},{"id":"T32090","span":{"begin":98,"end":104},"obj":"NN"},{"id":"T32089","span":{"begin":93,"end":97},"obj":"NN"},{"id":"T32088","span":{"begin":88,"end":92},"obj":"NN"},{"id":"T32087","span":{"begin":82,"end":87},"obj":"JJ"},{"id":"T32086","span":{"begin":80,"end":81},"obj":"-RRB-"},{"id":"T32085","span":{"begin":79,"end":80},"obj":"NN"},{"id":"T32084","span":{"begin":78,"end":79},"obj":"-LRB-"},{"id":"T32083","span":{"begin":75,"end":77},"obj":"IN"},{"id":"T32082","span":{"begin":63,"end":74},"obj":"NN"},{"id":"T32081","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T32080","span":{"begin":51,"end":59},"obj":"VB"},{"id":"T32079","span":{"begin":46,"end":50},"obj":"NN"},{"id":"T32078","span":{"begin":41,"end":45},"obj":"IN"},{"id":"T32077","span":{"begin":33,"end":40},"obj":"VB"},{"id":"T32076","span":{"begin":28,"end":32},"obj":"VB"},{"id":"T32075","span":{"begin":22,"end":27},"obj":"NN"}],"relations":[{"id":"R22179","pred":"arg1Of","subj":"T32075","obj":"T32072"},{"id":"R22180","pred":"arg1Of","subj":"T32075","obj":"T32073"},{"id":"R22181","pred":"arg1Of","subj":"T32075","obj":"T32074"},{"id":"R22182","pred":"arg1Of","subj":"T32075","obj":"T32076"},{"id":"R22183","pred":"arg2Of","subj":"T32075","obj":"T32077"},{"id":"R22184","pred":"arg2Of","subj":"T32075","obj":"T32094"},{"id":"R22185","pred":"arg1Of","subj":"T32075","obj":"T32095"},{"id":"R22186","pred":"arg1Of","subj":"T32077","obj":"T32078"},{"id":"R22187","pred":"modOf","subj":"T32077","obj":"T32080"},{"id":"R22188","pred":"arg1Of","subj":"T32077","obj":"T32091"},{"id":"R22189","pred":"arg1Of","subj":"T32077","obj":"T32093"},{"id":"R22190","pred":"arg2Of","subj":"T32079","obj":"T32078"},{"id":"R22191","pred":"arg1Of","subj":"T32082","obj":"T32080"},{"id":"R22192","pred":"arg2Of","subj":"T32082","obj":"T32081"},{"id":"R22193","pred":"arg1Of","subj":"T32082","obj":"T32083"},{"id":"R22194","pred":"arg2Of","subj":"T32085","obj":"T32084"},{"id":"R22195","pred":"arg3Of","subj":"T32086","obj":"T32084"},{"id":"R22196","pred":"arg2Of","subj":"T32090","obj":"T32083"},{"id":"R22197","pred":"arg1Of","subj":"T32090","obj":"T32084"},{"id":"R22198","pred":"arg1Of","subj":"T32090","obj":"T32087"},{"id":"R22199","pred":"arg1Of","subj":"T32090","obj":"T32088"},{"id":"R22200","pred":"arg1Of","subj":"T32090","obj":"T32089"},{"id":"R22201","pred":"arg2Of","subj":"T32092","obj":"T32091"},{"id":"R22202","pred":"arg2Of","subj":"T32093","obj":"T32076"},{"id":"R22203","pred":"arg2Of","subj":"T32094","obj":"T32093"},{"id":"R22204","pred":"arg3Of","subj":"T32095","obj":"T32094"},{"id":"R22205","pred":"arg1Of","subj":"T32095","obj":"T32105"},{"id":"R22206","pred":"arg1Of","subj":"T32098","obj":"T32096"},{"id":"R22207","pred":"arg1Of","subj":"T32098","obj":"T32097"},{"id":"R22208","pred":"arg1Of","subj":"T32098","obj":"T32099"},{"id":"R22209","pred":"arg2Of","subj":"T32099","obj":"T32095"},{"id":"R22210","pred":"arg2Of","subj":"T32101","obj":"T32100"},{"id":"R22211","pred":"arg3Of","subj":"T32102","obj":"T32100"},{"id":"R22212","pred":"arg2Of","subj":"T32104","obj":"T32099"},{"id":"R22213","pred":"arg1Of","subj":"T32104","obj":"T32100"},{"id":"R22214","pred":"arg1Of","subj":"T32104","obj":"T32103"},{"id":"R22215","pred":"arg2Of","subj":"T32107","obj":"T32105"},{"id":"R22216","pred":"arg1Of","subj":"T32107","obj":"T32106"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T31877","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T31876","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T31875","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T31870","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T31869","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T31868","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T31867","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T31874","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T31873","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T31872","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T31871","span":{"begin":298,"end":302},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T32141","span":{"begin":651,"end":655},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T32137","span":{"begin":298,"end":302},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T32136","span":{"begin":88,"end":92},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T32135","span":{"begin":46,"end":50},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T32133","span":{"begin":408,"end":411},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T32132","span":{"begin":361,"end":364},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T32130","span":{"begin":408,"end":411},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T32129","span":{"begin":361,"end":364},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T32127","span":{"begin":408,"end":411},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T32126","span":{"begin":361,"end":364},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T32140","span":{"begin":619,"end":623},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T32139","span":{"begin":484,"end":488},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T32138","span":{"begin":452,"end":456},"obj":"http://www.uniprot.org/uniprot/P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
UBERON-AE
{"project":"UBERON-AE","denotations":[{"id":"T31845","span":{"begin":531,"end":535},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T31844","span":{"begin":376,"end":380},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T31881","span":{"begin":201,"end":206},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T31880","span":{"begin":22,"end":27},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
sentences
{"project":"sentences","denotations":[{"id":"T31848","span":{"begin":180,"end":687},"obj":"Sentence"},{"id":"T31847","span":{"begin":0,"end":179},"obj":"Sentence"},{"id":"T221","span":{"begin":0,"end":179},"obj":"Sentence"},{"id":"T222","span":{"begin":180,"end":687},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
simple1
{"project":"simple1","denotations":[{"id":"T32012","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T32011","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T32010","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T32009","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T32008","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T32007","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T32006","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T32005","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T32004","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T32003","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T32002","span":{"begin":0,"end":4},"obj":"Protein"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T32117","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T32116","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T32115","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T32114","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T32113","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T32112","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T32111","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T32110","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T32109","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T32124","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T32123","span":{"begin":5,"end":14},"obj":"Negative_regulation"},{"id":"T32122","span":{"begin":98,"end":104},"obj":"Transcription"},{"id":"T32119","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T32118","span":{"begin":651,"end":655},"obj":"Protein"}],"relations":[{"id":"R22218","pred":"themeOf","subj":"T32109","obj":"T32123"},{"id":"R22219","pred":"themeOf","subj":"T32111","obj":"T32122"},{"id":"R22220","pred":"themeOf","subj":"T32116","obj":"T32124"},{"id":"R22221","pred":"themeOf","subj":"T32119","obj":"T32124"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T32193","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T32192","span":{"begin":5,"end":14},"obj":"Negative_regulation"},{"id":"T32188","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T32187","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T32186","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T32185","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T32184","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T32183","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T32182","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T32181","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T32180","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T32179","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T32178","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R22237","pred":"themeOf","subj":"T32178","obj":"T32192"},{"id":"R22238","pred":"themeOf","subj":"T32185","obj":"T32193"},{"id":"R22239","pred":"themeOf","subj":"T32188","obj":"T32193"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T32176","span":{"begin":661,"end":667},"obj":"Transcription"},{"id":"T32175","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T32174","span":{"begin":494,"end":500},"obj":"Transcription"},{"id":"T32173","span":{"begin":308,"end":314},"obj":"Transcription"},{"id":"T32172","span":{"begin":98,"end":104},"obj":"Transcription"},{"id":"T32171","span":{"begin":5,"end":14},"obj":"Negative_regulation"},{"id":"T32168","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T32167","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T32166","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T32165","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T32164","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T32163","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T32162","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T32161","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T32160","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T32159","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T32158","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R22228","pred":"themeOf","subj":"T32158","obj":"T32171"},{"id":"R22229","pred":"themeOf","subj":"T32160","obj":"T32172"},{"id":"R22230","pred":"themeOf","subj":"T32162","obj":"T32173"},{"id":"R22231","pred":"themeOf","subj":"T32164","obj":"T32174"},{"id":"R22232","pred":"themeOf","subj":"T32165","obj":"T32175"},{"id":"R22233","pred":"themeOf","subj":"T32167","obj":"T32176"},{"id":"R22234","pred":"themeOf","subj":"T32168","obj":"T32175"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T32261","span":{"begin":225,"end":233},"obj":"Entity"},{"id":"T32260","span":{"begin":536,"end":587},"obj":"Entity"},{"id":"T32259","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T32258","span":{"begin":559,"end":579},"obj":"Protein"},{"id":"T32257","span":{"begin":332,"end":333},"obj":"Entity"},{"id":"T32256","span":{"begin":489,"end":493},"obj":"Protein"},{"id":"T32255","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T32254","span":{"begin":648,"end":667},"obj":"Protein"},{"id":"T32253","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T32252","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T32251","span":{"begin":137,"end":150},"obj":"Protein"},{"id":"T32250","span":{"begin":404,"end":411},"obj":"Entity"},{"id":"T32249","span":{"begin":606,"end":614},"obj":"Entity"},{"id":"T32248","span":{"begin":439,"end":447},"obj":"Entity"},{"id":"T32247","span":{"begin":295,"end":325},"obj":"Protein"},{"id":"T32246","span":{"begin":619,"end":678},"obj":"Protein"},{"id":"T32245","span":{"begin":46,"end":81},"obj":"Protein"},{"id":"T32244","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T32243","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T32242","span":{"begin":361,"end":364},"obj":"Protein"},{"id":"T32241","span":{"begin":108,"end":115},"obj":"Protein"},{"id":"T32240","span":{"begin":452,"end":511},"obj":"Protein"},{"id":"T32239","span":{"begin":318,"end":325},"obj":"Protein"},{"id":"T32238","span":{"begin":376,"end":403},"obj":"Entity"},{"id":"T32237","span":{"begin":671,"end":678},"obj":"Protein"},{"id":"T32235","span":{"begin":82,"end":97},"obj":"Protein"},{"id":"T32234","span":{"begin":504,"end":511},"obj":"Protein"},{"id":"T32233","span":{"begin":522,"end":523},"obj":"Entity"},{"id":"T32232","span":{"begin":481,"end":500},"obj":"Protein"},{"id":"T32267","span":{"begin":536,"end":587},"obj":"Gene_expression"},{"id":"T32266","span":{"begin":536,"end":587},"obj":"Gene_expression"},{"id":"T32264","span":{"begin":0,"end":27},"obj":"Entity"},{"id":"T32262","span":{"begin":404,"end":411},"obj":"Protein"}],"relations":[{"id":"R22250","pred":"themeOf","subj":"T32255","obj":"T32266"},{"id":"R22251","pred":"themeOf","subj":"T32258","obj":"T32267"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T32060","span":{"begin":686,"end":687},"obj":"."},{"id":"T32059","span":{"begin":684,"end":686},"obj":"NN"},{"id":"T32058","span":{"begin":682,"end":683},"obj":"CD"},{"id":"T31951","span":{"begin":277,"end":278},"obj":"-LRB-"},{"id":"T31950","span":{"begin":274,"end":276},"obj":"IN"},{"id":"T31949","span":{"begin":265,"end":273},"obj":"VBN"},{"id":"T31948","span":{"begin":263,"end":264},"obj":"-RRB-"},{"id":"T31947","span":{"begin":251,"end":263},"obj":"RB"},{"id":"T31946","span":{"begin":248,"end":250},"obj":"NN"},{"id":"T31945","span":{"begin":245,"end":247},"obj":"CD"},{"id":"T31944","span":{"begin":242,"end":244},"obj":"CC"},{"id":"T31943","span":{"begin":239,"end":241},"obj":"NN"},{"id":"T31942","span":{"begin":235,"end":238},"obj":"CD"},{"id":"T31941","span":{"begin":234,"end":235},"obj":"-LRB-"},{"id":"T31940","span":{"begin":225,"end":233},"obj":"NNP"},{"id":"T31939","span":{"begin":220,"end":224},"obj":"IN"},{"id":"T31938","span":{"begin":212,"end":219},"obj":"VBN"},{"id":"T31937","span":{"begin":207,"end":211},"obj":"VBD"},{"id":"T31936","span":{"begin":201,"end":206},"obj":"NNS"},{"id":"T31935","span":{"begin":198,"end":200},"obj":"CD"},{"id":"T31934","span":{"begin":193,"end":198},"obj":"CD"},{"id":"T31933","span":{"begin":190,"end":192},"obj":"CC"},{"id":"T31932","span":{"begin":184,"end":189},"obj":"CD"},{"id":"T31931","span":{"begin":180,"end":183},"obj":"NNP"},{"id":"T31930","span":{"begin":178,"end":179},"obj":"."},{"id":"T31929","span":{"begin":176,"end":178},"obj":"NN"},{"id":"T31928","span":{"begin":174,"end":175},"obj":"CD"},{"id":"T31927","span":{"begin":171,"end":173},"obj":"IN"},{"id":"T31926","span":{"begin":166,"end":170},"obj":"NN"},{"id":"T31925","span":{"begin":158,"end":165},"obj":"JJ"},{"id":"T31924","span":{"begin":156,"end":157},"obj":"-RRB-"},{"id":"T31923","span":{"begin":155,"end":156},"obj":"NNP"},{"id":"T31922","span":{"begin":154,"end":155},"obj":"-LRB-"},{"id":"T31921","span":{"begin":151,"end":153},"obj":"CC"},{"id":"T31920","span":{"begin":147,"end":150},"obj":"NNP"},{"id":"T31919","span":{"begin":143,"end":146},"obj":"NNP"},{"id":"T31918","span":{"begin":137,"end":142},"obj":"JJ"},{"id":"T31917","span":{"begin":131,"end":136},"obj":"VBG"},{"id":"T31916","span":{"begin":120,"end":130},"obj":"VBN"},{"id":"T31915","span":{"begin":116,"end":119},"obj":"CC"},{"id":"T31914","span":{"begin":108,"end":115},"obj":"NNP"},{"id":"T31913","span":{"begin":105,"end":107},"obj":"IN"},{"id":"T31912","span":{"begin":98,"end":104},"obj":"NNS"},{"id":"T31911","span":{"begin":93,"end":97},"obj":"NNP"},{"id":"T31910","span":{"begin":88,"end":92},"obj":"NNP"},{"id":"T31909","span":{"begin":82,"end":87},"obj":"JJ"},{"id":"T31908","span":{"begin":80,"end":81},"obj":"-RRB-"},{"id":"T31907","span":{"begin":79,"end":80},"obj":"NN"},{"id":"T31906","span":{"begin":78,"end":79},"obj":"-LRB-"},{"id":"T31905","span":{"begin":75,"end":77},"obj":"IN"},{"id":"T31904","span":{"begin":63,"end":74},"obj":"NN"},{"id":"T31903","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T31902","span":{"begin":51,"end":59},"obj":"VBD"},{"id":"T31901","span":{"begin":46,"end":50},"obj":"NNP"},{"id":"T31900","span":{"begin":41,"end":45},"obj":"IN"},{"id":"T31899","span":{"begin":33,"end":40},"obj":"VBN"},{"id":"T31898","span":{"begin":28,"end":32},"obj":"VBD"},{"id":"T31897","span":{"begin":22,"end":27},"obj":"NNS"},{"id":"T31896","span":{"begin":15,"end":21},"obj":"NNP"},{"id":"T31895","span":{"begin":5,"end":14},"obj":"NN"},{"id":"T31894","span":{"begin":0,"end":4},"obj":"NNP"},{"id":"T31988","span":{"begin":426,"end":433},"obj":"VBN"},{"id":"T31987","span":{"begin":421,"end":425},"obj":"VBD"},{"id":"T31986","span":{"begin":415,"end":420},"obj":"NNP"},{"id":"T31985","span":{"begin":412,"end":414},"obj":"CC"},{"id":"T31984","span":{"begin":404,"end":411},"obj":"NNP"},{"id":"T31983","span":{"begin":393,"end":403},"obj":"VBG"},{"id":"T31982","span":{"begin":381,"end":392},"obj":"NNS"},{"id":"T31981","span":{"begin":376,"end":380},"obj":"NN"},{"id":"T31980","span":{"begin":370,"end":375},"obj":"NN"},{"id":"T31979","span":{"begin":365,"end":369},"obj":"NN"},{"id":"T31978","span":{"begin":361,"end":364},"obj":"NNP"},{"id":"T31977","span":{"begin":359,"end":360},"obj":"-RRB-"},{"id":"T31976","span":{"begin":358,"end":359},"obj":"NNP"},{"id":"T31975","span":{"begin":357,"end":358},"obj":"-LRB-"},{"id":"T31974","span":{"begin":355,"end":356},"obj":"."},{"id":"T31973","span":{"begin":353,"end":355},"obj":"NN"},{"id":"T31972","span":{"begin":351,"end":352},"obj":"CD"},{"id":"T31971","span":{"begin":348,"end":350},"obj":"IN"},{"id":"T31970","span":{"begin":343,"end":347},"obj":"NN"},{"id":"T31969","span":{"begin":335,"end":342},"obj":"JJ"},{"id":"T31968","span":{"begin":333,"end":334},"obj":"-RRB-"},{"id":"T31967","span":{"begin":332,"end":333},"obj":"NN"},{"id":"T31966","span":{"begin":331,"end":332},"obj":","},{"id":"T31965","span":{"begin":330,"end":331},"obj":"NNP"},{"id":"T31964","span":{"begin":329,"end":330},"obj":"-LRB-"},{"id":"T31963","span":{"begin":326,"end":328},"obj":"CC"},{"id":"T31962","span":{"begin":318,"end":325},"obj":"NNP"},{"id":"T31961","span":{"begin":315,"end":317},"obj":"IN"},{"id":"T31960","span":{"begin":308,"end":314},"obj":"NNS"},{"id":"T31959","span":{"begin":303,"end":307},"obj":"NNP"},{"id":"T31958","span":{"begin":298,"end":302},"obj":"NNP"},{"id":"T31957","span":{"begin":295,"end":297},"obj":"IN"},{"id":"T31956","span":{"begin":283,"end":294},"obj":"NN"},{"id":"T31955","span":{"begin":281,"end":282},"obj":"-RRB-"},{"id":"T31954","span":{"begin":280,"end":281},"obj":"NNP"},{"id":"T31953","span":{"begin":279,"end":280},"obj":","},{"id":"T31952","span":{"begin":278,"end":279},"obj":"NNP"},{"id":"T32057","span":{"begin":679,"end":681},"obj":"IN"},{"id":"T32056","span":{"begin":671,"end":678},"obj":"NNP"},{"id":"T32055","span":{"begin":668,"end":670},"obj":"IN"},{"id":"T32054","span":{"begin":661,"end":667},"obj":"NNS"},{"id":"T32053","span":{"begin":656,"end":660},"obj":"NNP"},{"id":"T32052","span":{"begin":651,"end":655},"obj":"NNP"},{"id":"T32051","span":{"begin":648,"end":650},"obj":"IN"},{"id":"T32050","span":{"begin":636,"end":647},"obj":"NN"},{"id":"T32049","span":{"begin":633,"end":635},"obj":"IN"},{"id":"T32048","span":{"begin":624,"end":632},"obj":"VBD"},{"id":"T32047","span":{"begin":619,"end":623},"obj":"NNP"},{"id":"T32046","span":{"begin":615,"end":618},"obj":"CC"},{"id":"T32045","span":{"begin":606,"end":614},"obj":"NNP"},{"id":"T32044","span":{"begin":601,"end":605},"obj":"IN"},{"id":"T32043","span":{"begin":593,"end":600},"obj":"VBN"},{"id":"T32042","span":{"begin":588,"end":592},"obj":"VBD"},{"id":"T32041","span":{"begin":583,"end":587},"obj":"NNP"},{"id":"T32040","span":{"begin":580,"end":582},"obj":"CC"},{"id":"T32039","span":{"begin":575,"end":579},"obj":"NNP"},{"id":"T32038","span":{"begin":564,"end":574},"obj":"JJ"},{"id":"T32037","span":{"begin":559,"end":563},"obj":"RB"},{"id":"T32036","span":{"begin":548,"end":558},"obj":"VBG"},{"id":"T32035","span":{"begin":536,"end":547},"obj":"NNS"},{"id":"T32034","span":{"begin":531,"end":535},"obj":"NN"},{"id":"T32033","span":{"begin":525,"end":530},"obj":"NNP"},{"id":"T32032","span":{"begin":523,"end":524},"obj":"-RRB-"},{"id":"T32031","span":{"begin":522,"end":523},"obj":"NNP"},{"id":"T32030","span":{"begin":521,"end":522},"obj":"-LRB-"},{"id":"T32029","span":{"begin":519,"end":520},"obj":"."},{"id":"T32028","span":{"begin":517,"end":519},"obj":"NN"},{"id":"T32027","span":{"begin":515,"end":516},"obj":"CD"},{"id":"T32026","span":{"begin":512,"end":514},"obj":"IN"},{"id":"T32025","span":{"begin":504,"end":511},"obj":"NNP"},{"id":"T32024","span":{"begin":501,"end":503},"obj":"IN"},{"id":"T32023","span":{"begin":494,"end":500},"obj":"NNS"},{"id":"T32022","span":{"begin":489,"end":493},"obj":"NNP"},{"id":"T32021","span":{"begin":484,"end":488},"obj":"NNP"},{"id":"T32020","span":{"begin":481,"end":483},"obj":"IN"},{"id":"T32019","span":{"begin":469,"end":480},"obj":"NN"},{"id":"T32018","span":{"begin":466,"end":468},"obj":"IN"},{"id":"T32017","span":{"begin":457,"end":465},"obj":"VBD"},{"id":"T32016","span":{"begin":452,"end":456},"obj":"NNP"},{"id":"T32015","span":{"begin":448,"end":451},"obj":"CC"},{"id":"T32014","span":{"begin":439,"end":447},"obj":"NNP"},{"id":"T32013","span":{"begin":434,"end":438},"obj":"IN"}],"relations":[{"id":"R22026","pred":"amod","subj":"T31894","obj":"T31897"},{"id":"R22027","pred":"compound","subj":"T31895","obj":"T31897"},{"id":"R22028","pred":"compound","subj":"T31896","obj":"T31897"},{"id":"R22029","pred":"nsubjpass","subj":"T31897","obj":"T31899"},{"id":"R22030","pred":"auxpass","subj":"T31898","obj":"T31899"},{"id":"R22031","pred":"ROOT","subj":"T31899","obj":"T31899"},{"id":"R22032","pred":"prep","subj":"T31900","obj":"T31899"},{"id":"R22033","pred":"pobj","subj":"T31901","obj":"T31900"},{"id":"R22034","pred":"advcl","subj":"T31902","obj":"T31899"},{"id":"R22035","pred":"agent","subj":"T31903","obj":"T31902"},{"id":"R22036","pred":"pobj","subj":"T31904","obj":"T31903"},{"id":"R22037","pred":"prep","subj":"T31905","obj":"T31904"},{"id":"R22038","pred":"punct","subj":"T31906","obj":"T31907"},{"id":"R22039","pred":"nmod","subj":"T31907","obj":"T31912"},{"id":"R22040","pred":"punct","subj":"T31908","obj":"T31907"},{"id":"R22041","pred":"amod","subj":"T31909","obj":"T31912"},{"id":"R22042","pred":"compound","subj":"T31910","obj":"T31911"},{"id":"R22043","pred":"compound","subj":"T31911","obj":"T31912"},{"id":"R22044","pred":"pobj","subj":"T31912","obj":"T31905"},{"id":"R22045","pred":"agent","subj":"T31913","obj":"T31902"},{"id":"R22046","pred":"pobj","subj":"T31914","obj":"T31913"},{"id":"R22047","pred":"cc","subj":"T31915","obj":"T31902"},{"id":"R22048","pred":"conj","subj":"T31916","obj":"T31902"},{"id":"R22049","pred":"advcl","subj":"T31917","obj":"T31916"},{"id":"R22050","pred":"amod","subj":"T31918","obj":"T31920"},{"id":"R22051","pred":"compound","subj":"T31919","obj":"T31920"},{"id":"R22052","pred":"dobj","subj":"T31920","obj":"T31917"},{"id":"R22053","pred":"cc","subj":"T31921","obj":"T31920"},{"id":"R22054","pred":"punct","subj":"T31922","obj":"T31923"},{"id":"R22055","pred":"conj","subj":"T31923","obj":"T31920"},{"id":"R22056","pred":"punct","subj":"T31924","obj":"T31923"},{"id":"R22057","pred":"amod","subj":"T31925","obj":"T31926"},{"id":"R22058","pred":"conj","subj":"T31926","obj":"T31920"},{"id":"R22059","pred":"prep","subj":"T31927","obj":"T31917"},{"id":"R22060","pred":"nummod","subj":"T31928","obj":"T31929"},{"id":"R22061","pred":"pobj","subj":"T31929","obj":"T31927"},{"id":"R22062","pred":"punct","subj":"T31930","obj":"T31899"},{"id":"R22063","pred":"nsubjpass","subj":"T31931","obj":"T31938"},{"id":"R22064","pred":"nummod","subj":"T31932","obj":"T31931"},{"id":"R22065","pred":"cc","subj":"T31933","obj":"T31932"},{"id":"R22066","pred":"nummod","subj":"T31934","obj":"T31931"},{"id":"R22067","pred":"nummod","subj":"T31935","obj":"T31936"},{"id":"R22068","pred":"nsubjpass","subj":"T31936","obj":"T31938"},{"id":"R22069","pred":"auxpass","subj":"T31937","obj":"T31938"},{"id":"R22070","pred":"ROOT","subj":"T31938","obj":"T31938"},{"id":"R22071","pred":"prep","subj":"T31939","obj":"T31938"},{"id":"R22072","pred":"pobj","subj":"T31940","obj":"T31939"},{"id":"R22073","pred":"punct","subj":"T31941","obj":"T31943"},{"id":"R22074","pred":"nummod","subj":"T31942","obj":"T31943"},{"id":"R22075","pred":"parataxis","subj":"T31943","obj":"T31940"},{"id":"R22076","pred":"cc","subj":"T31944","obj":"T31943"},{"id":"R22077","pred":"nummod","subj":"T31945","obj":"T31946"},{"id":"R22078","pred":"conj","subj":"T31946","obj":"T31943"},{"id":"R22079","pred":"npadvmod","subj":"T31947","obj":"T31943"},{"id":"R22080","pred":"punct","subj":"T31948","obj":"T31943"},{"id":"R22081","pred":"advcl","subj":"T31949","obj":"T31938"},{"id":"R22082","pred":"agent","subj":"T31950","obj":"T31949"},{"id":"R22083","pred":"punct","subj":"T31951","obj":"T31952"},{"id":"R22084","pred":"pobj","subj":"T31952","obj":"T31950"},{"id":"R22085","pred":"punct","subj":"T31953","obj":"T31952"},{"id":"R22086","pred":"nmod","subj":"T31954","obj":"T31956"},{"id":"R22087","pred":"punct","subj":"T31955","obj":"T31954"},{"id":"R22088","pred":"appos","subj":"T31956","obj":"T31952"},{"id":"R22089","pred":"prep","subj":"T31957","obj":"T31956"},{"id":"R22090","pred":"compound","subj":"T31958","obj":"T31959"},{"id":"R22091","pred":"compound","subj":"T31959","obj":"T31960"},{"id":"R22092","pred":"pobj","subj":"T31960","obj":"T31957"},{"id":"R22093","pred":"prep","subj":"T31961","obj":"T31956"},{"id":"R22094","pred":"pobj","subj":"T31962","obj":"T31961"},{"id":"R22095","pred":"cc","subj":"T31963","obj":"T31962"},{"id":"R22096","pred":"punct","subj":"T31964","obj":"T31965"},{"id":"R22097","pred":"conj","subj":"T31965","obj":"T31962"},{"id":"R22098","pred":"punct","subj":"T31966","obj":"T31965"},{"id":"R22099","pred":"appos","subj":"T31967","obj":"T31965"},{"id":"R22100","pred":"punct","subj":"T31968","obj":"T31965"},{"id":"R22101","pred":"amod","subj":"T31969","obj":"T31970"},{"id":"R22102","pred":"conj","subj":"T31970","obj":"T31956"},{"id":"R22103","pred":"prep","subj":"T31971","obj":"T31956"},{"id":"R22104","pred":"nummod","subj":"T31972","obj":"T31973"},{"id":"R22105","pred":"pobj","subj":"T31973","obj":"T31971"},{"id":"R22106","pred":"punct","subj":"T31974","obj":"T31938"},{"id":"R22107","pred":"punct","subj":"T31975","obj":"T31978"},{"id":"R22108","pred":"nmod","subj":"T31976","obj":"T31978"},{"id":"R22109","pred":"punct","subj":"T31977","obj":"T31978"},{"id":"R22110","pred":"nsubjpass","subj":"T31978","obj":"T31988"},{"id":"R22111","pred":"amod","subj":"T31979","obj":"T31982"},{"id":"R22112","pred":"compound","subj":"T31980","obj":"T31981"},{"id":"R22113","pred":"compound","subj":"T31981","obj":"T31982"},{"id":"R22114","pred":"dobj","subj":"T31982","obj":"T31978"},{"id":"R22115","pred":"acl","subj":"T31983","obj":"T31982"},{"id":"R22116","pred":"dobj","subj":"T31984","obj":"T31983"},{"id":"R22117","pred":"cc","subj":"T31985","obj":"T31984"},{"id":"R22118","pred":"conj","subj":"T31986","obj":"T31984"},{"id":"R22119","pred":"auxpass","subj":"T31987","obj":"T31988"},{"id":"R22120","pred":"ROOT","subj":"T31988","obj":"T31988"},{"id":"R22121","pred":"prep","subj":"T32013","obj":"T31988"},{"id":"R22122","pred":"pobj","subj":"T32014","obj":"T32013"},{"id":"R22123","pred":"cc","subj":"T32015","obj":"T32014"},{"id":"R22124","pred":"conj","subj":"T32016","obj":"T32014"},{"id":"R22125","pred":"advcl","subj":"T32017","obj":"T31988"},{"id":"R22126","pred":"agent","subj":"T32018","obj":"T32017"},{"id":"R22127","pred":"pobj","subj":"T32019","obj":"T32018"},{"id":"R22128","pred":"prep","subj":"T32020","obj":"T32019"},{"id":"R22129","pred":"compound","subj":"T32021","obj":"T32022"},{"id":"R22130","pred":"compound","subj":"T32022","obj":"T32023"},{"id":"R22131","pred":"pobj","subj":"T32023","obj":"T32020"},{"id":"R22132","pred":"agent","subj":"T32024","obj":"T32017"},{"id":"R22133","pred":"pobj","subj":"T32025","obj":"T32024"},{"id":"R22134","pred":"prep","subj":"T32026","obj":"T32017"},{"id":"R22135","pred":"nummod","subj":"T32027","obj":"T32028"},{"id":"R22136","pred":"pobj","subj":"T32028","obj":"T32026"},{"id":"R22137","pred":"punct","subj":"T32029","obj":"T31988"},{"id":"R22138","pred":"punct","subj":"T32030","obj":"T32036"},{"id":"R22139","pred":"compound","subj":"T32031","obj":"T32034"},{"id":"R22140","pred":"punct","subj":"T32032","obj":"T32033"},{"id":"R22141","pred":"compound","subj":"T32033","obj":"T32034"},{"id":"R22142","pred":"compound","subj":"T32034","obj":"T32035"},{"id":"R22143","pred":"nsubj","subj":"T32035","obj":"T32036"},{"id":"R22144","pred":"ROOT","subj":"T32036","obj":"T32036"},{"id":"R22145","pred":"advmod","subj":"T32037","obj":"T32039"},{"id":"R22146","pred":"compound","subj":"T32038","obj":"T32039"},{"id":"R22147","pred":"dobj","subj":"T32039","obj":"T32036"},{"id":"R22148","pred":"cc","subj":"T32040","obj":"T32039"},{"id":"R22149","pred":"conj","subj":"T32041","obj":"T32039"},{"id":"R22150","pred":"auxpass","subj":"T32042","obj":"T32043"},{"id":"R22151","pred":"conj","subj":"T32043","obj":"T32036"},{"id":"R22152","pred":"prep","subj":"T32044","obj":"T32043"},{"id":"R22153","pred":"pobj","subj":"T32045","obj":"T32044"},{"id":"R22154","pred":"cc","subj":"T32046","obj":"T32045"},{"id":"R22155","pred":"conj","subj":"T32047","obj":"T32045"},{"id":"R22156","pred":"conj","subj":"T32048","obj":"T32043"},{"id":"R22157","pred":"agent","subj":"T32049","obj":"T32048"},{"id":"R22158","pred":"pobj","subj":"T32050","obj":"T32049"},{"id":"R22159","pred":"prep","subj":"T32051","obj":"T32050"},{"id":"R22160","pred":"compound","subj":"T32052","obj":"T32053"},{"id":"R22161","pred":"compound","subj":"T32053","obj":"T32054"},{"id":"R22162","pred":"pobj","subj":"T32054","obj":"T32051"},{"id":"R22163","pred":"agent","subj":"T32055","obj":"T32048"},{"id":"R22164","pred":"pobj","subj":"T32056","obj":"T32055"},{"id":"R22165","pred":"prep","subj":"T32057","obj":"T32048"},{"id":"R22166","pred":"nummod","subj":"T32058","obj":"T32059"},{"id":"R22167","pred":"pobj","subj":"T32059","obj":"T32057"},{"id":"R22168","pred":"punct","subj":"T32060","obj":"T32036"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T32212","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T32211","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T32210","span":{"begin":651,"end":660},"obj":"Protein"},{"id":"T32209","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T32208","span":{"begin":606,"end":614},"obj":"Protein"},{"id":"T32207","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T32206","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T32205","span":{"begin":393,"end":403},"obj":"Gene_expression"},{"id":"T32204","span":{"begin":484,"end":493},"obj":"Protein"},{"id":"T32203","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T32202","span":{"begin":439,"end":447},"obj":"Protein"},{"id":"T32201","span":{"begin":404,"end":411},"obj":"Protein"},{"id":"T32200","span":{"begin":298,"end":307},"obj":"Protein"},{"id":"T32199","span":{"begin":137,"end":150},"obj":"Protein"},{"id":"T32198","span":{"begin":88,"end":97},"obj":"Protein"},{"id":"T32197","span":{"begin":46,"end":50},"obj":"Protein"}],"relations":[{"id":"R22243","pred":"themeOf","subj":"T32201","obj":"T32205"},{"id":"R22244","pred":"themeOf","subj":"T32206","obj":"T32211"},{"id":"R22245","pred":"themeOf","subj":"T32207","obj":"T32212"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}
test3
{"project":"test3","denotations":[{"id":"T31843","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T31842","span":{"begin":624,"end":632},"obj":"Positive_regulation"},{"id":"T31841","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T31840","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T31839","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T31838","span":{"begin":548,"end":558},"obj":"Gene_expression"},{"id":"T31837","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T31836","span":{"begin":457,"end":465},"obj":"Positive_regulation"},{"id":"T31835","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T31834","span":{"begin":393,"end":403},"obj":"Gene_expression"},{"id":"T31833","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T31832","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T31831","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T31830","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T31829","span":{"begin":5,"end":14},"obj":"Negative_regulation"},{"id":"T31828","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T31825","span":{"begin":651,"end":655},"obj":"Protein"},{"id":"T31824","span":{"begin":619,"end":623},"obj":"Protein"},{"id":"T31823","span":{"begin":583,"end":587},"obj":"Protein"},{"id":"T31822","span":{"begin":575,"end":579},"obj":"Protein"},{"id":"T31821","span":{"begin":484,"end":488},"obj":"Protein"},{"id":"T31820","span":{"begin":452,"end":456},"obj":"Protein"},{"id":"T31819","span":{"begin":298,"end":302},"obj":"Protein"},{"id":"T31818","span":{"begin":143,"end":146},"obj":"Protein"},{"id":"T31817","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T31816","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T31815","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R22003","pred":"themeOf","subj":"T31828","obj":"T31829"},{"id":"R22004","pred":"themeOf","subj":"T31830","obj":"T31829"},{"id":"R22005","pred":"themeOf","subj":"T31835","obj":"T31834"},{"id":"R22006","pred":"themeOf","subj":"T31839","obj":"T31838"},{"id":"R22007","pred":"themeOf","subj":"T31840","obj":"T31838"},{"id":"R22008","pred":"themeOf","subj":"T31841","obj":"T31838"}],"text":"FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr."}