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PMC:3585731 / 35333-35512 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T31810 5-14 Negative_regulation denotes deficient
T31800 143-146 Protein denotes 18S
T31799 88-92 Protein denotes TNFα
T31798 46-50 Protein denotes TNFα
T31797 0-4 Protein denotes FADD
R21995 T31797 T31810 themeOf FADD,deficient
R21996 T31798 T31810 themeOf TNFα,deficient

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T32074 15-21 NN denotes Jurkat
T32073 5-14 JJ denotes deficient
T32072 0-4 NN denotes FADD
T32107 176-178 NN denotes hr
T32106 174-175 CD denotes 9
T32105 171-173 IN denotes at
T32104 166-170 NN denotes blot
T32103 158-165 JJ denotes western
T32102 156-157 -RRB- denotes )
T32101 155-156 NN denotes B
T32100 154-155 -LRB- denotes (
T32099 151-153 CC denotes or
T32098 147-150 NN denotes RNA
T32097 143-146 NN denotes 18S
T32096 137-142 JJ denotes human
T32095 131-136 VB denotes using
T32094 120-130 VB denotes normalized
T32093 116-119 CC denotes and
T32092 108-115 NN denotes qRT-PCR
T32091 105-107 IN denotes by
T32090 98-104 NN denotes levels
T32089 93-97 NN denotes mRNA
T32088 88-92 NN denotes TNFα
T32087 82-87 JJ denotes human
T32086 80-81 -RRB- denotes )
T32085 79-80 NN denotes A
T32084 78-79 -LRB- denotes (
T32083 75-77 IN denotes of
T32082 63-74 NN denotes measurement
T32081 60-62 IN denotes by
T32080 51-59 VB denotes followed
T32079 46-50 NN denotes TNFα
T32078 41-45 IN denotes with
T32077 33-40 VB denotes treated
T32076 28-32 VB denotes were
T32075 22-27 NN denotes cells
R22179 T32075 T32072 arg1Of cells,FADD
R22180 T32075 T32073 arg1Of cells,deficient
R22181 T32075 T32074 arg1Of cells,Jurkat
R22182 T32075 T32076 arg1Of cells,were
R22183 T32075 T32077 arg2Of cells,treated
R22184 T32075 T32094 arg2Of cells,normalized
R22185 T32075 T32095 arg1Of cells,using
R22186 T32077 T32078 arg1Of treated,with
R22187 T32077 T32080 modOf treated,followed
R22188 T32077 T32091 arg1Of treated,by
R22189 T32077 T32093 arg1Of treated,and
R22190 T32079 T32078 arg2Of TNFα,with
R22191 T32082 T32080 arg1Of measurement,followed
R22192 T32082 T32081 arg2Of measurement,by
R22193 T32082 T32083 arg1Of measurement,of
R22194 T32085 T32084 arg2Of A,(
R22195 T32086 T32084 arg3Of ),(
R22196 T32090 T32083 arg2Of levels,of
R22197 T32090 T32084 arg1Of levels,(
R22198 T32090 T32087 arg1Of levels,human
R22199 T32090 T32088 arg1Of levels,TNFα
R22200 T32090 T32089 arg1Of levels,mRNA
R22201 T32092 T32091 arg2Of qRT-PCR,by
R22202 T32093 T32076 arg2Of and,were
R22203 T32094 T32093 arg2Of normalized,and
R22204 T32095 T32094 arg3Of using,normalized
R22205 T32095 T32105 arg1Of using,at
R22206 T32098 T32096 arg1Of RNA,human
R22207 T32098 T32097 arg1Of RNA,18S
R22208 T32098 T32099 arg1Of RNA,or
R22209 T32099 T32095 arg2Of or,using
R22210 T32101 T32100 arg2Of B,(
R22211 T32102 T32100 arg3Of ),(
R22212 T32104 T32099 arg2Of blot,or
R22213 T32104 T32100 arg1Of blot,(
R22214 T32104 T32103 arg1Of blot,western
R22215 T32107 T32105 arg2Of hr,at
R22216 T32107 T32106 arg1Of hr,9

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T31870 143-146 Protein denotes 18S
T31869 88-92 Protein denotes TNFα
T31868 46-50 Protein denotes TNFα
T31867 0-4 Protein denotes FADD

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T32136 88-92 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T32135 46-50 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-CC

Id Subject Object Predicate Lexical cue
T31880 22-27 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T31847 0-179 Sentence denotes FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr.
T221 0-179 Sentence denotes FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr.

simple1

Id Subject Object Predicate Lexical cue
T32005 143-146 Protein denotes 18S
T32004 88-92 Protein denotes TNFα
T32003 46-50 Protein denotes TNFα
T32002 0-4 Protein denotes FADD

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T32112 143-146 Protein denotes 18S
T32111 88-92 Protein denotes TNFα
T32110 46-50 Protein denotes TNFα
T32109 0-4 Protein denotes FADD
T32123 5-14 Negative_regulation denotes deficient
T32122 98-104 Transcription denotes levels
R22218 T32109 T32123 themeOf FADD,deficient
R22219 T32111 T32122 themeOf TNFα,levels

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T32192 5-14 Negative_regulation denotes deficient
T32181 143-146 Protein denotes 18S
T32180 88-92 Protein denotes TNFα
T32179 46-50 Protein denotes TNFα
T32178 0-4 Protein denotes FADD
R22237 T32178 T32192 themeOf FADD,deficient

DLUT931

Id Subject Object Predicate Lexical cue
T32172 98-104 Transcription denotes levels
T32171 5-14 Negative_regulation denotes deficient
T32161 143-146 Protein denotes 18S
T32160 88-92 Protein denotes TNFα
T32159 46-50 Protein denotes TNFα
T32158 0-4 Protein denotes FADD
R22228 T32158 T32171 themeOf FADD,deficient
R22229 T32160 T32172 themeOf TNFα,levels

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T32259 0-4 Protein denotes FADD
T32253 88-92 Protein denotes TNFα
T32252 143-146 Protein denotes 18S
T32251 137-150 Protein denotes human 18S RNA
T32245 46-81 Protein denotes TNFα followed by measurement of (A)
T32241 108-115 Protein denotes qRT-PCR
T32235 82-97 Protein denotes human TNFα mRNA
T32264 0-27 Entity denotes FADD deficient Jurkat cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T31930 178-179 . denotes .
T31929 176-178 NN denotes hr
T31928 174-175 CD denotes 9
T31927 171-173 IN denotes at
T31926 166-170 NN denotes blot
T31925 158-165 JJ denotes western
T31924 156-157 -RRB- denotes )
T31923 155-156 NNP denotes B
T31922 154-155 -LRB- denotes (
T31921 151-153 CC denotes or
T31920 147-150 NNP denotes RNA
T31919 143-146 NNP denotes 18S
T31918 137-142 JJ denotes human
T31917 131-136 VBG denotes using
T31916 120-130 VBN denotes normalized
T31915 116-119 CC denotes and
T31914 108-115 NNP denotes qRT-PCR
T31913 105-107 IN denotes by
T31912 98-104 NNS denotes levels
T31911 93-97 NNP denotes mRNA
T31910 88-92 NNP denotes TNFα
T31909 82-87 JJ denotes human
T31908 80-81 -RRB- denotes )
T31907 79-80 NN denotes A
T31906 78-79 -LRB- denotes (
T31905 75-77 IN denotes of
T31904 63-74 NN denotes measurement
T31903 60-62 IN denotes by
T31902 51-59 VBD denotes followed
T31901 46-50 NNP denotes TNFα
T31900 41-45 IN denotes with
T31899 33-40 VBN denotes treated
T31898 28-32 VBD denotes were
T31897 22-27 NNS denotes cells
T31896 15-21 NNP denotes Jurkat
T31895 5-14 NN denotes deficient
T31894 0-4 NNP denotes FADD
R22026 T31894 T31897 amod FADD,cells
R22027 T31895 T31897 compound deficient,cells
R22028 T31896 T31897 compound Jurkat,cells
R22029 T31897 T31899 nsubjpass cells,treated
R22030 T31898 T31899 auxpass were,treated
R22031 T31899 T31899 ROOT treated,treated
R22032 T31900 T31899 prep with,treated
R22033 T31901 T31900 pobj TNFα,with
R22034 T31902 T31899 advcl followed,treated
R22035 T31903 T31902 agent by,followed
R22036 T31904 T31903 pobj measurement,by
R22037 T31905 T31904 prep of,measurement
R22038 T31906 T31907 punct (,A
R22039 T31907 T31912 nmod A,levels
R22040 T31908 T31907 punct ),A
R22041 T31909 T31912 amod human,levels
R22042 T31910 T31911 compound TNFα,mRNA
R22043 T31911 T31912 compound mRNA,levels
R22044 T31912 T31905 pobj levels,of
R22045 T31913 T31902 agent by,followed
R22046 T31914 T31913 pobj qRT-PCR,by
R22047 T31915 T31902 cc and,followed
R22048 T31916 T31902 conj normalized,followed
R22049 T31917 T31916 advcl using,normalized
R22050 T31918 T31920 amod human,RNA
R22051 T31919 T31920 compound 18S,RNA
R22052 T31920 T31917 dobj RNA,using
R22053 T31921 T31920 cc or,RNA
R22054 T31922 T31923 punct (,B
R22055 T31923 T31920 conj B,RNA
R22056 T31924 T31923 punct ),B
R22057 T31925 T31926 amod western,blot
R22058 T31926 T31920 conj blot,RNA
R22059 T31927 T31917 prep at,using
R22060 T31928 T31929 nummod 9,hr
R22061 T31929 T31927 pobj hr,at
R22062 T31930 T31899 punct .,treated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T32199 137-150 Protein denotes human 18S RNA
T32198 88-97 Protein denotes TNFα mRNA
T32197 46-50 Protein denotes TNFα

test3

Id Subject Object Predicate Lexical cue
T31832 143-146 Protein denotes 18S
T31831 88-92 Protein denotes TNFα
T31830 46-50 Protein denotes TNFα
T31829 5-14 Negative_regulation denotes deficient
T31828 0-4 Protein denotes FADD
T31818 143-146 Protein denotes 18S
T31817 88-92 Protein denotes TNFα
T31816 46-50 Protein denotes TNFα
T31815 0-4 Protein denotes FADD
R22003 T31828 T31829 themeOf FADD,deficient
R22004 T31830 T31829 themeOf TNFα,deficient