PMC:3585731 / 35210-36020
Annnotations
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31813 | 671-681 | Gene_expression | denotes | expressing |
| T31812 | 516-526 | Gene_expression | denotes | expressing |
| T31811 | 488-492 | Negative_regulation | denotes | null |
| T31810 | 128-137 | Negative_regulation | denotes | deficient |
| T31809 | 88-98 | Gene_expression | denotes | production |
| T31808 | 73-82 | Regulation | denotes | autocrine |
| T31807 | 774-778 | Protein | denotes | TNFα |
| T31806 | 742-746 | Protein | denotes | TNFα |
| T31805 | 706-710 | Protein | denotes | Akt2 |
| T31804 | 698-702 | Protein | denotes | Akt1 |
| T31803 | 607-611 | Protein | denotes | TNFα |
| T31802 | 575-579 | Protein | denotes | TNFα |
| T31801 | 421-425 | Protein | denotes | TNFα |
| T31800 | 266-269 | Protein | denotes | 18S |
| T31799 | 211-215 | Protein | denotes | TNFα |
| T31798 | 169-173 | Protein | denotes | TNFα |
| T31797 | 123-127 | Protein | denotes | FADD |
| T31796 | 83-87 | Protein | denotes | TNFα |
| R21994 | T31796 | T31809 | themeOf | TNFα,production |
| R21995 | T31797 | T31810 | themeOf | FADD,deficient |
| R21996 | T31798 | T31810 | themeOf | TNFα,deficient |
| R21997 | T31802 | T31812 | themeOf | TNFα,expressing |
| R21998 | T31804 | T31813 | themeOf | Akt1,expressing |
| R21999 | T31805 | T31813 | themeOf | Akt2,expressing |
| R22000 | T31806 | T31813 | themeOf | TNFα,expressing |
| R22001 | T31809 | T31808 | themeOf | production,autocrine |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32071 | 116-121 | NN | denotes | types |
| T32070 | 111-115 | NN | denotes | cell |
| T32069 | 102-110 | JJ | denotes | multiple |
| T32068 | 99-101 | IN | denotes | in |
| T32067 | 88-98 | NN | denotes | production |
| T32066 | 83-87 | NN | denotes | TNFα |
| T32065 | 73-82 | JJ | denotes | autocrine |
| T32064 | 70-72 | TO | denotes | to |
| T32063 | 58-69 | VB | denotes | contributes |
| T32062 | 48-57 | NN | denotes | signaling |
| T32061 | 44-47 | NN | denotes | Akt |
| T32074 | 138-144 | NN | denotes | Jurkat |
| T32073 | 128-137 | JJ | denotes | deficient |
| T32072 | 123-127 | NN | denotes | FADD |
| T32107 | 299-301 | NN | denotes | hr |
| T32106 | 297-298 | CD | denotes | 9 |
| T32105 | 294-296 | IN | denotes | at |
| T32104 | 289-293 | NN | denotes | blot |
| T32103 | 281-288 | JJ | denotes | western |
| T32102 | 279-280 | -RRB- | denotes | ) |
| T32101 | 278-279 | NN | denotes | B |
| T32100 | 277-278 | -LRB- | denotes | ( |
| T32099 | 274-276 | CC | denotes | or |
| T32098 | 270-273 | NN | denotes | RNA |
| T32097 | 266-269 | NN | denotes | 18S |
| T32096 | 260-265 | JJ | denotes | human |
| T32095 | 254-259 | VB | denotes | using |
| T32094 | 243-253 | VB | denotes | normalized |
| T32093 | 239-242 | CC | denotes | and |
| T32092 | 231-238 | NN | denotes | qRT-PCR |
| T32091 | 228-230 | IN | denotes | by |
| T32090 | 221-227 | NN | denotes | levels |
| T32089 | 216-220 | NN | denotes | mRNA |
| T32088 | 211-215 | NN | denotes | TNFα |
| T32087 | 205-210 | JJ | denotes | human |
| T32086 | 203-204 | -RRB- | denotes | ) |
| T32085 | 202-203 | NN | denotes | A |
| T32084 | 201-202 | -LRB- | denotes | ( |
| T32083 | 198-200 | IN | denotes | of |
| T32082 | 186-197 | NN | denotes | measurement |
| T32081 | 183-185 | IN | denotes | by |
| T32080 | 174-182 | VB | denotes | followed |
| T32079 | 169-173 | NN | denotes | TNFα |
| T32078 | 164-168 | IN | denotes | with |
| T32077 | 156-163 | VB | denotes | treated |
| T32076 | 151-155 | VB | denotes | were |
| T32075 | 145-150 | NN | denotes | cells |
| R22169 | T32062 | T32061 | arg1Of | signaling,Akt |
| R22170 | T32062 | T32063 | arg1Of | signaling,contributes |
| R22171 | T32063 | T32064 | arg1Of | contributes,to |
| R22172 | T32067 | T32064 | arg2Of | production,to |
| R22173 | T32067 | T32065 | arg1Of | production,autocrine |
| R22174 | T32067 | T32066 | arg1Of | production,TNFα |
| R22175 | T32067 | T32068 | arg1Of | production,in |
| R22176 | T32071 | T32068 | arg2Of | types,in |
| R22177 | T32071 | T32069 | arg1Of | types,multiple |
| R22178 | T32071 | T32070 | arg1Of | types,cell |
| R22179 | T32075 | T32072 | arg1Of | cells,FADD |
| R22180 | T32075 | T32073 | arg1Of | cells,deficient |
| R22181 | T32075 | T32074 | arg1Of | cells,Jurkat |
| R22182 | T32075 | T32076 | arg1Of | cells,were |
| R22183 | T32075 | T32077 | arg2Of | cells,treated |
| R22184 | T32075 | T32094 | arg2Of | cells,normalized |
| R22185 | T32075 | T32095 | arg1Of | cells,using |
| R22186 | T32077 | T32078 | arg1Of | treated,with |
| R22187 | T32077 | T32080 | modOf | treated,followed |
| R22188 | T32077 | T32091 | arg1Of | treated,by |
| R22189 | T32077 | T32093 | arg1Of | treated,and |
| R22190 | T32079 | T32078 | arg2Of | TNFα,with |
| R22191 | T32082 | T32080 | arg1Of | measurement,followed |
| R22192 | T32082 | T32081 | arg2Of | measurement,by |
| R22193 | T32082 | T32083 | arg1Of | measurement,of |
| R22194 | T32085 | T32084 | arg2Of | A,( |
| R22195 | T32086 | T32084 | arg3Of | ),( |
| R22196 | T32090 | T32083 | arg2Of | levels,of |
| R22197 | T32090 | T32084 | arg1Of | levels,( |
| R22198 | T32090 | T32087 | arg1Of | levels,human |
| R22199 | T32090 | T32088 | arg1Of | levels,TNFα |
| R22200 | T32090 | T32089 | arg1Of | levels,mRNA |
| R22201 | T32092 | T32091 | arg2Of | qRT-PCR,by |
| R22202 | T32093 | T32076 | arg2Of | and,were |
| R22203 | T32094 | T32093 | arg2Of | normalized,and |
| R22204 | T32095 | T32094 | arg3Of | using,normalized |
| R22205 | T32095 | T32105 | arg1Of | using,at |
| R22206 | T32098 | T32096 | arg1Of | RNA,human |
| R22207 | T32098 | T32097 | arg1Of | RNA,18S |
| R22208 | T32098 | T32099 | arg1Of | RNA,or |
| R22209 | T32099 | T32095 | arg2Of | or,using |
| R22210 | T32101 | T32100 | arg2Of | B,( |
| R22211 | T32102 | T32100 | arg3Of | ),( |
| R22212 | T32104 | T32099 | arg2Of | blot,or |
| R22213 | T32104 | T32100 | arg1Of | blot,( |
| R22214 | T32104 | T32103 | arg1Of | blot,western |
| R22215 | T32107 | T32105 | arg2Of | hr,at |
| R22216 | T32107 | T32106 | arg1Of | hr,9 |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31877 | 774-778 | Protein | denotes | TNFα |
| T31876 | 742-746 | Protein | denotes | TNFα |
| T31875 | 706-710 | Protein | denotes | Akt2 |
| T31870 | 266-269 | Protein | denotes | 18S |
| T31869 | 211-215 | Protein | denotes | TNFα |
| T31868 | 169-173 | Protein | denotes | TNFα |
| T31867 | 123-127 | Protein | denotes | FADD |
| T31866 | 83-87 | Protein | denotes | TNFα |
| T31874 | 698-702 | Protein | denotes | Akt1 |
| T31873 | 607-611 | Protein | denotes | TNFα |
| T31872 | 575-579 | Protein | denotes | TNFα |
| T31871 | 421-425 | Protein | denotes | TNFα |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32141 | 774-778 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32137 | 421-425 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32136 | 211-215 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32135 | 169-173 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32134 | 83-87 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32133 | 531-534 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T32132 | 484-487 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T32131 | 44-47 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T32130 | 531-534 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T32129 | 484-487 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T32128 | 44-47 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T32127 | 531-534 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T32126 | 484-487 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T32125 | 44-47 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T32140 | 742-746 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32139 | 607-611 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T32138 | 575-579 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31845 | 654-658 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T31844 | 499-503 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31878 | 48-57 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31881 | 324-329 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T31880 | 145-150 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T31879 | 111-115 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31848 | 303-810 | Sentence | denotes | RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. |
| T31847 | 123-302 | Sentence | denotes | FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. |
| T31846 | 44-122 | Sentence | denotes | Akt signaling contributes to autocrine TNFα production in multiple cell types. |
| T220 | 0-122 | Sentence | denotes | 10.1371/journal.pone.0056576.g008 Figure 8 Akt signaling contributes to autocrine TNFα production in multiple cell types. |
| T221 | 123-302 | Sentence | denotes | FADD deficient Jurkat cells were treated with TNFα followed by measurement of (A) human TNFα mRNA levels by qRT-PCR and normalized using human 18S RNA or (B) western blot at 9 hr. |
| T222 | 303-810 | Sentence | denotes | RAW 264.7 or J774A.1 cells were treated with zVAD.fmk (100 uM or 50 uM respectively) followed by (C,E) measurement of TNFα mRNA levels by qRT-PCR or (D,F) western blot at 9 hr. (G) Akt null mouse lung fibroblasts expressing Myr-Akt or K179M were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. (H) Mouse lung fibroblasts expressing only endogenous Akt1 or Akt2 were treated with zVAD.fmk and TNFα followed by measurement of TNFα mRNA levels by qRT-PCR at 9 hr. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32012 | 774-778 | Protein | denotes | TNFα |
| T32011 | 742-746 | Protein | denotes | TNFα |
| T32010 | 706-710 | Protein | denotes | Akt2 |
| T32009 | 698-702 | Protein | denotes | Akt1 |
| T32008 | 607-611 | Protein | denotes | TNFα |
| T32007 | 575-579 | Protein | denotes | TNFα |
| T32006 | 421-425 | Protein | denotes | TNFα |
| T32005 | 266-269 | Protein | denotes | 18S |
| T32004 | 211-215 | Protein | denotes | TNFα |
| T32003 | 169-173 | Protein | denotes | TNFα |
| T32002 | 123-127 | Protein | denotes | FADD |
| T32001 | 83-87 | Protein | denotes | TNFα |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32117 | 742-746 | Protein | denotes | TNFα |
| T32116 | 706-710 | Protein | denotes | Akt2 |
| T32115 | 607-611 | Protein | denotes | TNFα |
| T32114 | 575-579 | Protein | denotes | TNFα |
| T32113 | 421-425 | Protein | denotes | TNFα |
| T32112 | 266-269 | Protein | denotes | 18S |
| T32111 | 211-215 | Protein | denotes | TNFα |
| T32110 | 169-173 | Protein | denotes | TNFα |
| T32109 | 123-127 | Protein | denotes | FADD |
| T32108 | 83-87 | Protein | denotes | TNFα |
| T32124 | 671-681 | Gene_expression | denotes | expressing |
| T32123 | 128-137 | Negative_regulation | denotes | deficient |
| T32122 | 221-227 | Transcription | denotes | levels |
| T32121 | 58-69 | Positive_regulation | denotes | contributes |
| T32120 | 88-98 | Gene_expression | denotes | production |
| T32119 | 698-702 | Protein | denotes | Akt1 |
| T32118 | 774-778 | Protein | denotes | TNFα |
| R22217 | T32108 | T32120 | themeOf | TNFα,production |
| R22218 | T32109 | T32123 | themeOf | FADD,deficient |
| R22219 | T32111 | T32122 | themeOf | TNFα,levels |
| R22220 | T32116 | T32124 | themeOf | Akt2,expressing |
| R22221 | T32119 | T32124 | themeOf | Akt1,expressing |
| R22222 | T32120 | T32121 | themeOf | production,contributes |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32193 | 671-681 | Gene_expression | denotes | expressing |
| T32192 | 128-137 | Negative_regulation | denotes | deficient |
| T32191 | 88-98 | Gene_expression | denotes | production |
| T32190 | 73-82 | Positive_regulation | denotes | autocrine |
| T32189 | 58-69 | Positive_regulation | denotes | contributes |
| T32188 | 698-702 | Protein | denotes | Akt1 |
| T32187 | 774-778 | Protein | denotes | TNFα |
| T32186 | 742-746 | Protein | denotes | TNFα |
| T32185 | 706-710 | Protein | denotes | Akt2 |
| T32184 | 607-611 | Protein | denotes | TNFα |
| T32183 | 575-579 | Protein | denotes | TNFα |
| T32182 | 421-425 | Protein | denotes | TNFα |
| T32181 | 266-269 | Protein | denotes | 18S |
| T32180 | 211-215 | Protein | denotes | TNFα |
| T32179 | 169-173 | Protein | denotes | TNFα |
| T32178 | 123-127 | Protein | denotes | FADD |
| T32177 | 83-87 | Protein | denotes | TNFα |
| R22236 | T32177 | T32191 | themeOf | TNFα,production |
| R22237 | T32178 | T32192 | themeOf | FADD,deficient |
| R22238 | T32185 | T32193 | themeOf | Akt2,expressing |
| R22239 | T32188 | T32193 | themeOf | Akt1,expressing |
| R22240 | T32191 | T32189 | themeOf | production,contributes |
| R22241 | T32191 | T32190 | themeOf | production,autocrine |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32176 | 784-790 | Transcription | denotes | levels |
| T32175 | 671-681 | Gene_expression | denotes | expressing |
| T32174 | 617-623 | Transcription | denotes | levels |
| T32173 | 431-437 | Transcription | denotes | levels |
| T32172 | 221-227 | Transcription | denotes | levels |
| T32171 | 128-137 | Negative_regulation | denotes | deficient |
| T32170 | 73-82 | Positive_regulation | denotes | autocrine |
| T32169 | 88-98 | Gene_expression | denotes | production |
| T32168 | 698-702 | Protein | denotes | Akt1 |
| T32167 | 774-778 | Protein | denotes | TNFα |
| T32166 | 742-746 | Protein | denotes | TNFα |
| T32165 | 706-710 | Protein | denotes | Akt2 |
| T32164 | 607-611 | Protein | denotes | TNFα |
| T32163 | 575-579 | Protein | denotes | TNFα |
| T32162 | 421-425 | Protein | denotes | TNFα |
| T32161 | 266-269 | Protein | denotes | 18S |
| T32160 | 211-215 | Protein | denotes | TNFα |
| T32159 | 169-173 | Protein | denotes | TNFα |
| T32158 | 123-127 | Protein | denotes | FADD |
| T32157 | 83-87 | Protein | denotes | TNFα |
| R22227 | T32157 | T32169 | themeOf | TNFα,production |
| R22228 | T32158 | T32171 | themeOf | FADD,deficient |
| R22229 | T32160 | T32172 | themeOf | TNFα,levels |
| R22230 | T32162 | T32173 | themeOf | TNFα,levels |
| R22231 | T32164 | T32174 | themeOf | TNFα,levels |
| R22232 | T32165 | T32175 | themeOf | Akt2,expressing |
| R22233 | T32167 | T32176 | themeOf | TNFα,levels |
| R22234 | T32168 | T32175 | themeOf | Akt1,expressing |
| R22235 | T32169 | T32170 | themeOf | production,autocrine |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32261 | 348-356 | Entity | denotes | zVAD.fmk |
| T32260 | 659-710 | Entity | denotes | fibroblasts expressing only endogenous Akt1 or Akt2 |
| T32259 | 123-127 | Protein | denotes | FADD |
| T32258 | 682-702 | Protein | denotes | only endogenous Akt1 |
| T32257 | 455-456 | Entity | denotes | F |
| T32256 | 612-616 | Protein | denotes | mRNA |
| T32255 | 706-710 | Protein | denotes | Akt2 |
| T32254 | 771-790 | Protein | denotes | of TNFα mRNA levels |
| T32253 | 211-215 | Protein | denotes | TNFα |
| T32252 | 266-269 | Protein | denotes | 18S |
| T32251 | 260-273 | Protein | denotes | human 18S RNA |
| T32250 | 527-534 | Entity | denotes | Myr-Akt |
| T32249 | 729-737 | Entity | denotes | zVAD.fmk |
| T32248 | 562-570 | Entity | denotes | zVAD.fmk |
| T32247 | 418-448 | Protein | denotes | of TNFα mRNA levels by qRT-PCR |
| T32246 | 742-801 | Protein | denotes | TNFα followed by measurement of TNFα mRNA levels by qRT-PCR |
| T32245 | 169-204 | Protein | denotes | TNFα followed by measurement of (A) |
| T32244 | 421-425 | Protein | denotes | TNFα |
| T32243 | 774-778 | Protein | denotes | TNFα |
| T32242 | 484-487 | Protein | denotes | Akt |
| T32241 | 231-238 | Protein | denotes | qRT-PCR |
| T32240 | 575-634 | Protein | denotes | TNFα followed by measurement of TNFα mRNA levels by qRT-PCR |
| T32239 | 441-448 | Protein | denotes | qRT-PCR |
| T32238 | 499-526 | Entity | denotes | lung fibroblasts expressing |
| T32237 | 794-801 | Protein | denotes | qRT-PCR |
| T32236 | 102-121 | Entity | denotes | multiple cell types |
| T32235 | 205-220 | Protein | denotes | human TNFα mRNA |
| T32234 | 627-634 | Protein | denotes | qRT-PCR |
| T32233 | 645-646 | Entity | denotes | H |
| T32232 | 604-623 | Protein | denotes | of TNFα mRNA levels |
| T32267 | 659-710 | Gene_expression | denotes | fibroblasts expressing only endogenous Akt1 or Akt2 |
| T32266 | 659-710 | Gene_expression | denotes | fibroblasts expressing only endogenous Akt1 or Akt2 |
| T32265 | 73-121 | Gene_expression | denotes | autocrine TNFα production in multiple cell types |
| T32264 | 123-150 | Entity | denotes | FADD deficient Jurkat cells |
| T32263 | 83-87 | Protein | denotes | TNFα |
| T32262 | 527-534 | Protein | denotes | Myr-Akt |
| R22250 | T32255 | T32266 | themeOf | Akt2,fibroblasts expressing only endogenous Akt1 or Akt2 |
| R22251 | T32258 | T32267 | themeOf | only endogenous Akt1,fibroblasts expressing only endogenous Akt1 or Akt2 |
| R22252 | T32263 | T32265 | themeOf | TNFα,autocrine TNFα production in multiple cell types |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32060 | 809-810 | . | denotes | . |
| T32059 | 807-809 | NN | denotes | hr |
| T32058 | 805-806 | CD | denotes | 9 |
| T31951 | 400-401 | -LRB- | denotes | ( |
| T31950 | 397-399 | IN | denotes | by |
| T31949 | 388-396 | VBN | denotes | followed |
| T31948 | 386-387 | -RRB- | denotes | ) |
| T31947 | 374-386 | RB | denotes | respectively |
| T31946 | 371-373 | NN | denotes | uM |
| T31945 | 368-370 | CD | denotes | 50 |
| T31944 | 365-367 | CC | denotes | or |
| T31943 | 362-364 | NN | denotes | uM |
| T31942 | 358-361 | CD | denotes | 100 |
| T31941 | 357-358 | -LRB- | denotes | ( |
| T31940 | 348-356 | NNP | denotes | zVAD.fmk |
| T31939 | 343-347 | IN | denotes | with |
| T31938 | 335-342 | VBN | denotes | treated |
| T31937 | 330-334 | VBD | denotes | were |
| T31936 | 324-329 | NNS | denotes | cells |
| T31935 | 321-323 | CD | denotes | .1 |
| T31934 | 316-321 | CD | denotes | J774A |
| T31933 | 313-315 | CC | denotes | or |
| T31932 | 307-312 | CD | denotes | 264.7 |
| T31931 | 303-306 | NNP | denotes | RAW |
| T31930 | 301-302 | . | denotes | . |
| T31929 | 299-301 | NN | denotes | hr |
| T31928 | 297-298 | CD | denotes | 9 |
| T31927 | 294-296 | IN | denotes | at |
| T31926 | 289-293 | NN | denotes | blot |
| T31925 | 281-288 | JJ | denotes | western |
| T31924 | 279-280 | -RRB- | denotes | ) |
| T31923 | 278-279 | NNP | denotes | B |
| T31922 | 277-278 | -LRB- | denotes | ( |
| T31921 | 274-276 | CC | denotes | or |
| T31920 | 270-273 | NNP | denotes | RNA |
| T31919 | 266-269 | NNP | denotes | 18S |
| T31918 | 260-265 | JJ | denotes | human |
| T31917 | 254-259 | VBG | denotes | using |
| T31916 | 243-253 | VBN | denotes | normalized |
| T31915 | 239-242 | CC | denotes | and |
| T31914 | 231-238 | NNP | denotes | qRT-PCR |
| T31913 | 228-230 | IN | denotes | by |
| T31912 | 221-227 | NNS | denotes | levels |
| T31911 | 216-220 | NNP | denotes | mRNA |
| T31910 | 211-215 | NNP | denotes | TNFα |
| T31909 | 205-210 | JJ | denotes | human |
| T31908 | 203-204 | -RRB- | denotes | ) |
| T31907 | 202-203 | NN | denotes | A |
| T31906 | 201-202 | -LRB- | denotes | ( |
| T31905 | 198-200 | IN | denotes | of |
| T31904 | 186-197 | NN | denotes | measurement |
| T31903 | 183-185 | IN | denotes | by |
| T31902 | 174-182 | VBD | denotes | followed |
| T31901 | 169-173 | NNP | denotes | TNFα |
| T31900 | 164-168 | IN | denotes | with |
| T31899 | 156-163 | VBN | denotes | treated |
| T31898 | 151-155 | VBD | denotes | were |
| T31897 | 145-150 | NNS | denotes | cells |
| T31896 | 138-144 | NNP | denotes | Jurkat |
| T31895 | 128-137 | NN | denotes | deficient |
| T31894 | 123-127 | NNP | denotes | FADD |
| T31893 | 121-122 | . | denotes | . |
| T31892 | 116-121 | NNS | denotes | types |
| T31891 | 111-115 | NN | denotes | cell |
| T31890 | 102-110 | JJ | denotes | multiple |
| T31889 | 99-101 | IN | denotes | in |
| T31888 | 88-98 | NN | denotes | production |
| T31887 | 83-87 | JJ | denotes | TNFα |
| T31886 | 73-82 | VB | denotes | autocrine |
| T31885 | 70-72 | TO | denotes | to |
| T31884 | 58-69 | VBZ | denotes | contributes |
| T31883 | 48-57 | VBG | denotes | signaling |
| T31882 | 44-47 | NNP | denotes | Akt |
| T31988 | 549-556 | VBN | denotes | treated |
| T31987 | 544-548 | VBD | denotes | were |
| T31986 | 538-543 | NNP | denotes | K179M |
| T31985 | 535-537 | CC | denotes | or |
| T31984 | 527-534 | NNP | denotes | Myr-Akt |
| T31983 | 516-526 | VBG | denotes | expressing |
| T31982 | 504-515 | NNS | denotes | fibroblasts |
| T31981 | 499-503 | NN | denotes | lung |
| T31980 | 493-498 | NN | denotes | mouse |
| T31979 | 488-492 | NN | denotes | null |
| T31978 | 484-487 | NNP | denotes | Akt |
| T31977 | 482-483 | -RRB- | denotes | ) |
| T31976 | 481-482 | NNP | denotes | G |
| T31975 | 480-481 | -LRB- | denotes | ( |
| T31974 | 478-479 | . | denotes | . |
| T31973 | 476-478 | NN | denotes | hr |
| T31972 | 474-475 | CD | denotes | 9 |
| T31971 | 471-473 | IN | denotes | at |
| T31970 | 466-470 | NN | denotes | blot |
| T31969 | 458-465 | JJ | denotes | western |
| T31968 | 456-457 | -RRB- | denotes | ) |
| T31967 | 455-456 | NN | denotes | F |
| T31966 | 454-455 | , | denotes | , |
| T31965 | 453-454 | NNP | denotes | D |
| T31964 | 452-453 | -LRB- | denotes | ( |
| T31963 | 449-451 | CC | denotes | or |
| T31962 | 441-448 | NNP | denotes | qRT-PCR |
| T31961 | 438-440 | IN | denotes | by |
| T31960 | 431-437 | NNS | denotes | levels |
| T31959 | 426-430 | NNP | denotes | mRNA |
| T31958 | 421-425 | NNP | denotes | TNFα |
| T31957 | 418-420 | IN | denotes | of |
| T31956 | 406-417 | NN | denotes | measurement |
| T31955 | 404-405 | -RRB- | denotes | ) |
| T31954 | 403-404 | NNP | denotes | E |
| T31953 | 402-403 | , | denotes | , |
| T31952 | 401-402 | NNP | denotes | C |
| T32057 | 802-804 | IN | denotes | at |
| T32056 | 794-801 | NNP | denotes | qRT-PCR |
| T32055 | 791-793 | IN | denotes | by |
| T32054 | 784-790 | NNS | denotes | levels |
| T32053 | 779-783 | NNP | denotes | mRNA |
| T32052 | 774-778 | NNP | denotes | TNFα |
| T32051 | 771-773 | IN | denotes | of |
| T32050 | 759-770 | NN | denotes | measurement |
| T32049 | 756-758 | IN | denotes | by |
| T32048 | 747-755 | VBD | denotes | followed |
| T32047 | 742-746 | NNP | denotes | TNFα |
| T32046 | 738-741 | CC | denotes | and |
| T32045 | 729-737 | NNP | denotes | zVAD.fmk |
| T32044 | 724-728 | IN | denotes | with |
| T32043 | 716-723 | VBN | denotes | treated |
| T32042 | 711-715 | VBD | denotes | were |
| T32041 | 706-710 | NNP | denotes | Akt2 |
| T32040 | 703-705 | CC | denotes | or |
| T32039 | 698-702 | NNP | denotes | Akt1 |
| T32038 | 687-697 | JJ | denotes | endogenous |
| T32037 | 682-686 | RB | denotes | only |
| T32036 | 671-681 | VBG | denotes | expressing |
| T32035 | 659-670 | NNS | denotes | fibroblasts |
| T32034 | 654-658 | NN | denotes | lung |
| T32033 | 648-653 | NNP | denotes | Mouse |
| T32032 | 646-647 | -RRB- | denotes | ) |
| T32031 | 645-646 | NNP | denotes | H |
| T32030 | 644-645 | -LRB- | denotes | ( |
| T32029 | 642-643 | . | denotes | . |
| T32028 | 640-642 | NN | denotes | hr |
| T32027 | 638-639 | CD | denotes | 9 |
| T32026 | 635-637 | IN | denotes | at |
| T32025 | 627-634 | NNP | denotes | qRT-PCR |
| T32024 | 624-626 | IN | denotes | by |
| T32023 | 617-623 | NNS | denotes | levels |
| T32022 | 612-616 | NNP | denotes | mRNA |
| T32021 | 607-611 | NNP | denotes | TNFα |
| T32020 | 604-606 | IN | denotes | of |
| T32019 | 592-603 | NN | denotes | measurement |
| T32018 | 589-591 | IN | denotes | by |
| T32017 | 580-588 | VBD | denotes | followed |
| T32016 | 575-579 | NNP | denotes | TNFα |
| T32015 | 571-574 | CC | denotes | and |
| T32014 | 562-570 | NNP | denotes | zVAD.fmk |
| T32013 | 557-561 | IN | denotes | with |
| R22014 | T31882 | T31884 | nsubj | Akt,contributes |
| R22015 | T31883 | T31884 | nsubj | signaling,contributes |
| R22016 | T31884 | T31884 | ROOT | contributes,contributes |
| R22017 | T31885 | T31886 | aux | to,autocrine |
| R22018 | T31886 | T31884 | xcomp | autocrine,contributes |
| R22019 | T31887 | T31888 | amod | TNFα,production |
| R22020 | T31888 | T31886 | dobj | production,autocrine |
| R22021 | T31889 | T31886 | prep | in,autocrine |
| R22022 | T31890 | T31892 | amod | multiple,types |
| R22023 | T31891 | T31892 | compound | cell,types |
| R22024 | T31892 | T31889 | pobj | types,in |
| R22025 | T31893 | T31884 | punct | .,contributes |
| R22026 | T31894 | T31897 | amod | FADD,cells |
| R22027 | T31895 | T31897 | compound | deficient,cells |
| R22028 | T31896 | T31897 | compound | Jurkat,cells |
| R22029 | T31897 | T31899 | nsubjpass | cells,treated |
| R22030 | T31898 | T31899 | auxpass | were,treated |
| R22031 | T31899 | T31899 | ROOT | treated,treated |
| R22032 | T31900 | T31899 | prep | with,treated |
| R22033 | T31901 | T31900 | pobj | TNFα,with |
| R22034 | T31902 | T31899 | advcl | followed,treated |
| R22035 | T31903 | T31902 | agent | by,followed |
| R22036 | T31904 | T31903 | pobj | measurement,by |
| R22037 | T31905 | T31904 | prep | of,measurement |
| R22038 | T31906 | T31907 | punct | (,A |
| R22039 | T31907 | T31912 | nmod | A,levels |
| R22040 | T31908 | T31907 | punct | ),A |
| R22041 | T31909 | T31912 | amod | human,levels |
| R22042 | T31910 | T31911 | compound | TNFα,mRNA |
| R22043 | T31911 | T31912 | compound | mRNA,levels |
| R22044 | T31912 | T31905 | pobj | levels,of |
| R22045 | T31913 | T31902 | agent | by,followed |
| R22046 | T31914 | T31913 | pobj | qRT-PCR,by |
| R22047 | T31915 | T31902 | cc | and,followed |
| R22048 | T31916 | T31902 | conj | normalized,followed |
| R22049 | T31917 | T31916 | advcl | using,normalized |
| R22050 | T31918 | T31920 | amod | human,RNA |
| R22051 | T31919 | T31920 | compound | 18S,RNA |
| R22052 | T31920 | T31917 | dobj | RNA,using |
| R22053 | T31921 | T31920 | cc | or,RNA |
| R22054 | T31922 | T31923 | punct | (,B |
| R22055 | T31923 | T31920 | conj | B,RNA |
| R22056 | T31924 | T31923 | punct | ),B |
| R22057 | T31925 | T31926 | amod | western,blot |
| R22058 | T31926 | T31920 | conj | blot,RNA |
| R22059 | T31927 | T31917 | prep | at,using |
| R22060 | T31928 | T31929 | nummod | 9,hr |
| R22061 | T31929 | T31927 | pobj | hr,at |
| R22062 | T31930 | T31899 | punct | .,treated |
| R22063 | T31931 | T31938 | nsubjpass | RAW,treated |
| R22064 | T31932 | T31931 | nummod | 264.7,RAW |
| R22065 | T31933 | T31932 | cc | or,264.7 |
| R22066 | T31934 | T31931 | nummod | J774A,RAW |
| R22067 | T31935 | T31936 | nummod | .1,cells |
| R22068 | T31936 | T31938 | nsubjpass | cells,treated |
| R22069 | T31937 | T31938 | auxpass | were,treated |
| R22070 | T31938 | T31938 | ROOT | treated,treated |
| R22071 | T31939 | T31938 | prep | with,treated |
| R22072 | T31940 | T31939 | pobj | zVAD.fmk,with |
| R22073 | T31941 | T31943 | punct | (,uM |
| R22074 | T31942 | T31943 | nummod | 100,uM |
| R22075 | T31943 | T31940 | parataxis | uM,zVAD.fmk |
| R22076 | T31944 | T31943 | cc | or,uM |
| R22077 | T31945 | T31946 | nummod | 50,uM |
| R22078 | T31946 | T31943 | conj | uM,uM |
| R22079 | T31947 | T31943 | npadvmod | respectively,uM |
| R22080 | T31948 | T31943 | punct | ),uM |
| R22081 | T31949 | T31938 | advcl | followed,treated |
| R22082 | T31950 | T31949 | agent | by,followed |
| R22083 | T31951 | T31952 | punct | (,C |
| R22084 | T31952 | T31950 | pobj | C,by |
| R22085 | T31953 | T31952 | punct | ",",C |
| R22086 | T31954 | T31956 | nmod | E,measurement |
| R22087 | T31955 | T31954 | punct | ),E |
| R22088 | T31956 | T31952 | appos | measurement,C |
| R22089 | T31957 | T31956 | prep | of,measurement |
| R22090 | T31958 | T31959 | compound | TNFα,mRNA |
| R22091 | T31959 | T31960 | compound | mRNA,levels |
| R22092 | T31960 | T31957 | pobj | levels,of |
| R22093 | T31961 | T31956 | prep | by,measurement |
| R22094 | T31962 | T31961 | pobj | qRT-PCR,by |
| R22095 | T31963 | T31962 | cc | or,qRT-PCR |
| R22096 | T31964 | T31965 | punct | (,D |
| R22097 | T31965 | T31962 | conj | D,qRT-PCR |
| R22098 | T31966 | T31965 | punct | ",",D |
| R22099 | T31967 | T31965 | appos | F,D |
| R22100 | T31968 | T31965 | punct | ),D |
| R22101 | T31969 | T31970 | amod | western,blot |
| R22102 | T31970 | T31956 | conj | blot,measurement |
| R22103 | T31971 | T31956 | prep | at,measurement |
| R22104 | T31972 | T31973 | nummod | 9,hr |
| R22105 | T31973 | T31971 | pobj | hr,at |
| R22106 | T31974 | T31938 | punct | .,treated |
| R22107 | T31975 | T31978 | punct | (,Akt |
| R22108 | T31976 | T31978 | nmod | G,Akt |
| R22109 | T31977 | T31978 | punct | ),Akt |
| R22110 | T31978 | T31988 | nsubjpass | Akt,treated |
| R22111 | T31979 | T31982 | amod | null,fibroblasts |
| R22112 | T31980 | T31981 | compound | mouse,lung |
| R22113 | T31981 | T31982 | compound | lung,fibroblasts |
| R22114 | T31982 | T31978 | dobj | fibroblasts,Akt |
| R22115 | T31983 | T31982 | acl | expressing,fibroblasts |
| R22116 | T31984 | T31983 | dobj | Myr-Akt,expressing |
| R22117 | T31985 | T31984 | cc | or,Myr-Akt |
| R22118 | T31986 | T31984 | conj | K179M,Myr-Akt |
| R22119 | T31987 | T31988 | auxpass | were,treated |
| R22120 | T31988 | T31988 | ROOT | treated,treated |
| R22121 | T32013 | T31988 | prep | with,treated |
| R22122 | T32014 | T32013 | pobj | zVAD.fmk,with |
| R22123 | T32015 | T32014 | cc | and,zVAD.fmk |
| R22124 | T32016 | T32014 | conj | TNFα,zVAD.fmk |
| R22125 | T32017 | T31988 | advcl | followed,treated |
| R22126 | T32018 | T32017 | agent | by,followed |
| R22127 | T32019 | T32018 | pobj | measurement,by |
| R22128 | T32020 | T32019 | prep | of,measurement |
| R22129 | T32021 | T32022 | compound | TNFα,mRNA |
| R22130 | T32022 | T32023 | compound | mRNA,levels |
| R22131 | T32023 | T32020 | pobj | levels,of |
| R22132 | T32024 | T32017 | agent | by,followed |
| R22133 | T32025 | T32024 | pobj | qRT-PCR,by |
| R22134 | T32026 | T32017 | prep | at,followed |
| R22135 | T32027 | T32028 | nummod | 9,hr |
| R22136 | T32028 | T32026 | pobj | hr,at |
| R22137 | T32029 | T31988 | punct | .,treated |
| R22138 | T32030 | T32036 | punct | (,expressing |
| R22139 | T32031 | T32034 | compound | H,lung |
| R22140 | T32032 | T32033 | punct | ),Mouse |
| R22141 | T32033 | T32034 | compound | Mouse,lung |
| R22142 | T32034 | T32035 | compound | lung,fibroblasts |
| R22143 | T32035 | T32036 | nsubj | fibroblasts,expressing |
| R22144 | T32036 | T32036 | ROOT | expressing,expressing |
| R22145 | T32037 | T32039 | advmod | only,Akt1 |
| R22146 | T32038 | T32039 | compound | endogenous,Akt1 |
| R22147 | T32039 | T32036 | dobj | Akt1,expressing |
| R22148 | T32040 | T32039 | cc | or,Akt1 |
| R22149 | T32041 | T32039 | conj | Akt2,Akt1 |
| R22150 | T32042 | T32043 | auxpass | were,treated |
| R22151 | T32043 | T32036 | conj | treated,expressing |
| R22152 | T32044 | T32043 | prep | with,treated |
| R22153 | T32045 | T32044 | pobj | zVAD.fmk,with |
| R22154 | T32046 | T32045 | cc | and,zVAD.fmk |
| R22155 | T32047 | T32045 | conj | TNFα,zVAD.fmk |
| R22156 | T32048 | T32043 | conj | followed,treated |
| R22157 | T32049 | T32048 | agent | by,followed |
| R22158 | T32050 | T32049 | pobj | measurement,by |
| R22159 | T32051 | T32050 | prep | of,measurement |
| R22160 | T32052 | T32053 | compound | TNFα,mRNA |
| R22161 | T32053 | T32054 | compound | mRNA,levels |
| R22162 | T32054 | T32051 | pobj | levels,of |
| R22163 | T32055 | T32048 | agent | by,followed |
| R22164 | T32056 | T32055 | pobj | qRT-PCR,by |
| R22165 | T32057 | T32048 | prep | at,followed |
| R22166 | T32058 | T32059 | nummod | 9,hr |
| R22167 | T32059 | T32057 | pobj | hr,at |
| R22168 | T32060 | T32036 | punct | .,expressing |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32212 | 671-681 | Gene_expression | denotes | expressing |
| T32211 | 671-681 | Gene_expression | denotes | expressing |
| T32210 | 774-783 | Protein | denotes | TNFα mRNA |
| T32209 | 742-746 | Protein | denotes | TNFα |
| T32208 | 729-737 | Protein | denotes | zVAD.fmk |
| T32207 | 706-710 | Protein | denotes | Akt2 |
| T32206 | 698-702 | Protein | denotes | Akt1 |
| T32205 | 516-526 | Gene_expression | denotes | expressing |
| T32204 | 607-616 | Protein | denotes | TNFα mRNA |
| T32203 | 575-579 | Protein | denotes | TNFα |
| T32202 | 562-570 | Protein | denotes | zVAD.fmk |
| T32201 | 527-534 | Protein | denotes | Myr-Akt |
| T32200 | 421-430 | Protein | denotes | TNFα mRNA |
| T32199 | 260-273 | Protein | denotes | human 18S RNA |
| T32198 | 211-220 | Protein | denotes | TNFα mRNA |
| T32197 | 169-173 | Protein | denotes | TNFα |
| T32196 | 88-98 | Gene_expression | denotes | production |
| T32195 | 73-87 | Protein | denotes | autocrine TNFα |
| T32194 | 44-47 | Protein | denotes | Akt |
| R22242 | T32195 | T32196 | themeOf | autocrine TNFα,production |
| R22243 | T32201 | T32205 | themeOf | Myr-Akt,expressing |
| R22244 | T32206 | T32211 | themeOf | Akt1,expressing |
| R22245 | T32207 | T32212 | themeOf | Akt2,expressing |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31843 | 774-778 | Protein | denotes | TNFα |
| T31842 | 747-755 | Positive_regulation | denotes | followed |
| T31841 | 742-746 | Protein | denotes | TNFα |
| T31840 | 706-710 | Protein | denotes | Akt2 |
| T31839 | 698-702 | Protein | denotes | Akt1 |
| T31838 | 671-681 | Gene_expression | denotes | expressing |
| T31837 | 607-611 | Protein | denotes | TNFα |
| T31836 | 580-588 | Positive_regulation | denotes | followed |
| T31835 | 575-579 | Protein | denotes | TNFα |
| T31834 | 516-526 | Gene_expression | denotes | expressing |
| T31833 | 421-425 | Protein | denotes | TNFα |
| T31832 | 266-269 | Protein | denotes | 18S |
| T31831 | 211-215 | Protein | denotes | TNFα |
| T31830 | 169-173 | Protein | denotes | TNFα |
| T31829 | 128-137 | Negative_regulation | denotes | deficient |
| T31828 | 123-127 | Protein | denotes | FADD |
| T31827 | 88-98 | Gene_expression | denotes | production |
| T31826 | 83-87 | Protein | denotes | TNFα |
| T31825 | 774-778 | Protein | denotes | TNFα |
| T31824 | 742-746 | Protein | denotes | TNFα |
| T31823 | 706-710 | Protein | denotes | Akt2 |
| T31822 | 698-702 | Protein | denotes | Akt1 |
| T31821 | 607-611 | Protein | denotes | TNFα |
| T31820 | 575-579 | Protein | denotes | TNFα |
| T31819 | 421-425 | Protein | denotes | TNFα |
| T31818 | 266-269 | Protein | denotes | 18S |
| T31817 | 211-215 | Protein | denotes | TNFα |
| T31816 | 169-173 | Protein | denotes | TNFα |
| T31815 | 123-127 | Protein | denotes | FADD |
| T31814 | 83-87 | Protein | denotes | TNFα |
| R22002 | T31826 | T31827 | themeOf | TNFα,production |
| R22003 | T31828 | T31829 | themeOf | FADD,deficient |
| R22004 | T31830 | T31829 | themeOf | TNFα,deficient |
| R22005 | T31835 | T31834 | themeOf | TNFα,expressing |
| R22006 | T31839 | T31838 | themeOf | Akt1,expressing |
| R22007 | T31840 | T31838 | themeOf | Akt2,expressing |
| R22008 | T31841 | T31838 | themeOf | TNFα,expressing |