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PMC:3585731 / 35210-35332 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T31809 88-98 Gene_expression denotes production
T31808 73-82 Regulation denotes autocrine
T31796 83-87 Protein denotes TNFα
R21994 T31796 T31809 themeOf TNFα,production
R22001 T31809 T31808 themeOf production,autocrine

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T32071 116-121 NN denotes types
T32070 111-115 NN denotes cell
T32069 102-110 JJ denotes multiple
T32068 99-101 IN denotes in
T32067 88-98 NN denotes production
T32066 83-87 NN denotes TNFα
T32065 73-82 JJ denotes autocrine
T32064 70-72 TO denotes to
T32063 58-69 VB denotes contributes
T32062 48-57 NN denotes signaling
T32061 44-47 NN denotes Akt
R22169 T32062 T32061 arg1Of signaling,Akt
R22170 T32062 T32063 arg1Of signaling,contributes
R22171 T32063 T32064 arg1Of contributes,to
R22172 T32067 T32064 arg2Of production,to
R22173 T32067 T32065 arg1Of production,autocrine
R22174 T32067 T32066 arg1Of production,TNFα
R22175 T32067 T32068 arg1Of production,in
R22176 T32071 T32068 arg2Of types,in
R22177 T32071 T32069 arg1Of types,multiple
R22178 T32071 T32070 arg1Of types,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T31866 83-87 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T32134 83-87 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T32131 44-47 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T32128 44-47 http://www.uniprot.org/uniprot/P31751 denotes Akt
T32125 44-47 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T31878 48-57 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T31879 111-115 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T31846 44-122 Sentence denotes Akt signaling contributes to autocrine TNFα production in multiple cell types.
T220 0-122 Sentence denotes 10.1371/journal.pone.0056576.g008 Figure 8 Akt signaling contributes to autocrine TNFα production in multiple cell types.

simple1

Id Subject Object Predicate Lexical cue
T32001 83-87 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T32108 83-87 Protein denotes TNFα
T32121 58-69 Positive_regulation denotes contributes
T32120 88-98 Gene_expression denotes production
R22217 T32108 T32120 themeOf TNFα,production
R22222 T32120 T32121 themeOf production,contributes

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T32191 88-98 Gene_expression denotes production
T32190 73-82 Positive_regulation denotes autocrine
T32189 58-69 Positive_regulation denotes contributes
T32177 83-87 Protein denotes TNFα
R22236 T32177 T32191 themeOf TNFα,production
R22240 T32191 T32189 themeOf production,contributes
R22241 T32191 T32190 themeOf production,autocrine

DLUT931

Id Subject Object Predicate Lexical cue
T32170 73-82 Positive_regulation denotes autocrine
T32169 88-98 Gene_expression denotes production
T32157 83-87 Protein denotes TNFα
R22227 T32157 T32169 themeOf TNFα,production
R22235 T32169 T32170 themeOf production,autocrine

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T32236 102-121 Entity denotes multiple cell types
T32265 73-121 Gene_expression denotes autocrine TNFα production in multiple cell types
T32263 83-87 Protein denotes TNFα
R22252 T32263 T32265 themeOf TNFα,autocrine TNFα production in multiple cell types

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T31893 121-122 . denotes .
T31892 116-121 NNS denotes types
T31891 111-115 NN denotes cell
T31890 102-110 JJ denotes multiple
T31889 99-101 IN denotes in
T31888 88-98 NN denotes production
T31887 83-87 JJ denotes TNFα
T31886 73-82 VB denotes autocrine
T31885 70-72 TO denotes to
T31884 58-69 VBZ denotes contributes
T31883 48-57 VBG denotes signaling
T31882 44-47 NNP denotes Akt
R22014 T31882 T31884 nsubj Akt,contributes
R22015 T31883 T31884 nsubj signaling,contributes
R22016 T31884 T31884 ROOT contributes,contributes
R22017 T31885 T31886 aux to,autocrine
R22018 T31886 T31884 xcomp autocrine,contributes
R22019 T31887 T31888 amod TNFα,production
R22020 T31888 T31886 dobj production,autocrine
R22021 T31889 T31886 prep in,autocrine
R22022 T31890 T31892 amod multiple,types
R22023 T31891 T31892 compound cell,types
R22024 T31892 T31889 pobj types,in
R22025 T31893 T31884 punct .,contributes

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T32196 88-98 Gene_expression denotes production
T32195 73-87 Protein denotes autocrine TNFα
T32194 44-47 Protein denotes Akt
R22242 T32195 T32196 themeOf autocrine TNFα,production

test3

Id Subject Object Predicate Lexical cue
T31827 88-98 Gene_expression denotes production
T31826 83-87 Protein denotes TNFα
T31814 83-87 Protein denotes TNFα
R22002 T31826 T31827 themeOf TNFα,production