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PMC:3585731 / 34705-34869 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T16747 139-149 Negative_regulation denotes inhibitors
T16746 108-117 Negative_regulation denotes inhibited
T16745 35-44 Positive_regulation denotes increased
T16726 126-130 Protein denotes RIP1
T16725 13-17 Protein denotes TNFα
R11133 T16725 T16745 themeOf TNFα,increased
R11134 T16725 T16746 themeOf TNFα,inhibited
R11135 T16726 T16747 themeOf RIP1,inhibitors
R11146 T16747 T16746 causeOf inhibitors,inhibited

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17099 162-163 -RRB- denotes )
T17098 161-162 NN denotes E
T17097 160-161 -COMMA- denotes ,
T17096 159-160 NN denotes C
T17095 158-159 -COMMA- denotes ,
T17094 156-158 NN denotes 8A
T17093 151-155 NNP denotes Fig.
T17092 150-151 -LRB- denotes (
T17091 139-149 NN denotes inhibitors
T17090 135-138 NN denotes Akt
T17089 131-134 CC denotes and
T17088 126-130 NN denotes RIP1
T17087 121-125 CC denotes both
T17086 118-120 IN denotes by
T17085 108-117 VB denotes inhibited
T17084 96-107 RB denotes efficiently
T17083 92-95 CC denotes and
T17082 80-91 NN denotes necroptosis
T17081 73-79 IN denotes during
T17080 67-72 NN denotes types
T17079 62-66 NN denotes cell
T17078 56-61 DT denotes these
T17077 53-55 IN denotes of
T17076 48-52 DT denotes each
T17075 45-47 IN denotes in
T17074 35-44 VB denotes increased
T17073 30-34 VB denotes were
T17072 23-29 NN denotes levels
T17071 18-22 NN denotes mRNA
T17070 13-17 NN denotes TNFα
T17069 11-12 -COMMA- denotes ,
T17068 0-11 RB denotes Furthermore
R11309 T17072 T17070 arg1Of levels,TNFα
R11310 T17072 T17071 arg1Of levels,mRNA
R11311 T17072 T17073 arg1Of levels,were
R11312 T17072 T17074 arg2Of levels,increased
R11313 T17072 T17085 arg2Of levels,inhibited
R11314 T17074 T17075 arg1Of increased,in
R11315 T17074 T17083 arg1Of increased,and
R11316 T17076 T17075 arg2Of each,in
R11317 T17076 T17077 arg1Of each,of
R11318 T17080 T17077 arg2Of types,of
R11319 T17080 T17078 arg1Of types,these
R11320 T17080 T17079 arg1Of types,cell
R11321 T17080 T17081 arg1Of types,during
R11322 T17082 T17081 arg2Of necroptosis,during
R11323 T17083 T17068 arg1Of and,Furthermore
R11324 T17083 T17069 arg1Of and,","
R11325 T17083 T17073 arg2Of and,were
R11326 T17085 T17083 arg2Of inhibited,and
R11327 T17085 T17084 arg1Of inhibited,efficiently
R11328 T17088 T17089 arg1Of RIP1,and
R11329 T17090 T17089 arg2Of Akt,and
R11330 T17091 T17085 arg1Of inhibitors,inhibited
R11331 T17091 T17086 arg2Of inhibitors,by
R11332 T17091 T17087 arg1Of inhibitors,both
R11333 T17091 T17088 arg1Of inhibitors,RIP1
R11334 T17091 T17090 arg1Of inhibitors,Akt
R11335 T17091 T17092 arg1Of inhibitors,(
R11336 T17094 T17092 arg2Of 8A,(
R11337 T17094 T17093 arg1Of 8A,Fig.
R11338 T17094 T17095 arg1Of 8A,","
R11339 T17094 T17097 arg1Of 8A,","
R11340 T17096 T17095 arg2Of C,","
R11341 T17098 T17097 arg2Of E,","
R11342 T17099 T17092 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16881 126-130 Protein denotes RIP1
T16880 13-17 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17424 126-130 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T17414 13-17 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T17402 135-138 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T17389 135-138 http://www.uniprot.org/uniprot/P31751 denotes Akt
T17376 135-138 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T16917 80-91 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T16912 80-91 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T16830 0-164 Sentence denotes Furthermore, TNFα mRNA levels were increased in each of these cell types during necroptosis and efficiently inhibited by both RIP1 and Akt inhibitors (Fig. 8A,C,E).
T217 0-164 Sentence denotes Furthermore, TNFα mRNA levels were increased in each of these cell types during necroptosis and efficiently inhibited by both RIP1 and Akt inhibitors (Fig. 8A,C,E).

simple1

Id Subject Object Predicate Lexical cue
T16941 126-130 Protein denotes RIP1
T16940 13-17 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17364 23-29 Transcription denotes levels
T17363 108-117 Negative_regulation denotes inhibited
T17362 35-44 Positive_regulation denotes increased
T17361 139-149 Negative_regulation denotes inhibitors
T17347 126-130 Protein denotes RIP1
T17346 13-17 Protein denotes TNFα
R11567 T17346 T17363 themeOf TNFα,inhibited
R11568 T17346 T17364 themeOf TNFα,levels
R11569 T17346 T17362 themeOf TNFα,increased
R11570 T17347 T17361 themeOf RIP1,inhibitors

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17895 35-44 Positive_regulation denotes increased
T17894 139-149 Negative_regulation denotes inhibitors
T17893 108-117 Negative_regulation denotes inhibited
T17880 126-130 Protein denotes RIP1
T17879 13-17 Protein denotes TNFα
R11997 T17879 T17893 themeOf TNFα,inhibited
R11998 T17879 T17895 themeOf TNFα,increased
R11999 T17880 T17894 themeOf RIP1,inhibitors

DLUT931

Id Subject Object Predicate Lexical cue
T17862 108-117 Negative_regulation denotes inhibited
T17861 139-149 Negative_regulation denotes inhibitors
T17860 35-44 Positive_regulation denotes increased
T17859 23-29 Transcription denotes levels
T17845 126-130 Protein denotes RIP1
T17844 13-17 Protein denotes TNFα
R11977 T17844 T17859 themeOf TNFα,levels
R11978 T17845 T17861 themeOf RIP1,inhibitors
R11988 T17859 T17860 themeOf levels,increased
R11989 T17859 T17862 themeOf levels,inhibited
R11990 T17861 T17862 causeOf inhibitors,inhibited

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18093 126-130 Protein denotes RIP1
T18092 48-72 Entity denotes each of these cell types
T18088 135-149 Entity denotes Akt inhibitors
T18079 53-72 Entity denotes of these cell types
T18077 135-138 Protein denotes Akt
T18063 13-17 Protein denotes TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17580 163-164 . denotes .
T17579 162-163 -RRB- denotes )
T17578 161-162 NNP denotes E
T17577 160-161 , denotes ,
T17576 159-160 NNP denotes C
T17575 158-159 , denotes ,
T17574 156-158 NNP denotes 8A
T17573 151-155 NNP denotes Fig.
T17572 150-151 -LRB- denotes (
T17571 139-149 NNS denotes inhibitors
T17570 135-138 NNP denotes Akt
T17569 131-134 CC denotes and
T17568 126-130 CD denotes RIP1
T17567 121-125 DT denotes both
T17566 118-120 IN denotes by
T17565 108-117 VBN denotes inhibited
T17564 96-107 RB denotes efficiently
T17563 92-95 CC denotes and
T17562 80-91 NN denotes necroptosis
T17561 73-79 IN denotes during
T17560 67-72 NNS denotes types
T17559 62-66 NN denotes cell
T17558 56-61 DT denotes these
T17557 53-55 IN denotes of
T17556 48-52 DT denotes each
T17555 45-47 IN denotes in
T17554 35-44 VBN denotes increased
T17553 30-34 VBD denotes were
T17552 23-29 NNS denotes levels
T17551 18-22 NNP denotes mRNA
T17550 13-17 NNP denotes TNFα
T17549 11-12 , denotes ,
T17548 0-11 RB denotes Furthermore
R11702 T17548 T17554 advmod Furthermore,increased
R11703 T17549 T17554 punct ",",increased
R11704 T17550 T17552 compound TNFα,levels
R11705 T17551 T17552 compound mRNA,levels
R11706 T17552 T17554 nsubjpass levels,increased
R11707 T17553 T17554 auxpass were,increased
R11708 T17554 T17554 ROOT increased,increased
R11709 T17555 T17554 prep in,increased
R11710 T17556 T17555 pobj each,in
R11711 T17557 T17556 prep of,each
R11712 T17558 T17560 det these,types
R11713 T17559 T17560 compound cell,types
R11714 T17560 T17557 pobj types,of
R11715 T17561 T17554 prep during,increased
R11716 T17562 T17561 pobj necroptosis,during
R11717 T17563 T17554 cc and,increased
R11718 T17564 T17565 advmod efficiently,inhibited
R11719 T17565 T17554 conj inhibited,increased
R11720 T17566 T17565 agent by,inhibited
R11721 T17567 T17568 det both,RIP1
R11722 T17568 T17571 nummod RIP1,inhibitors
R11723 T17569 T17568 cc and,RIP1
R11724 T17570 T17571 compound Akt,inhibitors
R11725 T17571 T17566 pobj inhibitors,by
R11726 T17572 T17571 punct (,inhibitors
R11727 T17573 T17574 compound Fig.,8A
R11728 T17574 T17571 appos 8A,inhibitors
R11729 T17575 T17574 punct ",",8A
R11730 T17576 T17574 conj C,8A
R11731 T17577 T17576 punct ",",C
R11732 T17578 T17576 appos E,C
R11733 T17579 T17576 punct ),C
R11734 T17580 T17554 punct .,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17922 108-117 Negative_regulation denotes inhibited
T17921 108-117 Negative_regulation denotes inhibited
T17920 139-149 Negative_regulation denotes inhibitors
T17919 139-149 Negative_regulation denotes inhibitors
T17918 35-44 Positive_regulation denotes increased
T17917 135-138 Protein denotes Akt
T17916 126-130 Protein denotes RIP1
T17915 13-22 Protein denotes TNFα mRNA
R12014 T17915 T17918 themeOf TNFα mRNA,increased
R12015 T17915 T17921 themeOf TNFα mRNA,inhibited
R12016 T17915 T17922 themeOf TNFα mRNA,inhibited
R12017 T17916 T17919 themeOf RIP1,inhibitors
R12018 T17917 T17920 themeOf Akt,inhibitors
R12019 T17919 T17921 causeOf inhibitors,inhibited
R12020 T17920 T17922 causeOf inhibitors,inhibited

test3

Id Subject Object Predicate Lexical cue
T16797 139-149 Negative_regulation denotes inhibitors
T16796 126-130 Protein denotes RIP1
T16795 108-117 Negative_regulation denotes inhibited
T16794 13-17 Protein denotes TNFα
T16770 126-130 Protein denotes RIP1
T16769 13-17 Protein denotes TNFα
R11155 T16794 T16795 themeOf TNFα,inhibited
R11156 T16796 T16797 themeOf RIP1,inhibitors
R11157 T16797 T16795 themeOf inhibitors,inhibited