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PMC:3585731 / 34118-34302 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T16720 31-35 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16992 178-183 NN denotes death
T16991 173-177 NN denotes cell
T16990 161-172 JJ denotes necroptotic
T16989 153-160 VB denotes undergo
T16988 150-152 TO denotes to
T16987 144-149 VB denotes known
T16986 140-143 VB denotes are
T16985 135-139 WDT denotes that
T16984 129-134 NN denotes types
T16983 124-128 NN denotes cell
T16982 118-123 JJ denotes other
T16981 115-117 TO denotes to
T16980 109-114 NN denotes study
T16979 105-108 PRP-DOLLAR- denotes our
T16978 98-104 VB denotes expand
T16977 95-97 TO denotes to
T16976 88-94 VB denotes sought
T16975 85-87 PRP denotes we
T16974 83-84 -COMMA- denotes ,
T16973 78-83 NN denotes cells
T16972 73-77 NN denotes L929
T16971 70-72 IN denotes in
T16970 66-69 NN denotes Akt
T16969 63-65 TO denotes to
T16968 53-62 NN denotes signaling
T16967 36-52 JJ denotes kinase-dependent
T16966 31-35 NN denotes RIP1
T16965 28-30 IN denotes of
T16964 23-27 NN denotes role
T16963 19-22 DT denotes the
T16962 6-18 VB denotes establishing
T16961 0-5 IN denotes After
R11199 T16962 T16961 arg2Of establishing,After
R11200 T16964 T16962 arg2Of role,establishing
R11201 T16964 T16963 arg1Of role,the
R11202 T16964 T16965 arg1Of role,of
R11203 T16964 T16969 arg1Of role,to
R11204 T16964 T16971 arg1Of role,in
R11205 T16968 T16965 arg2Of signaling,of
R11206 T16968 T16966 arg1Of signaling,RIP1
R11207 T16968 T16967 arg1Of signaling,kinase-dependent
R11208 T16970 T16969 arg2Of Akt,to
R11209 T16973 T16971 arg2Of cells,in
R11210 T16973 T16972 arg1Of cells,L929
R11211 T16975 T16962 arg1Of we,establishing
R11212 T16975 T16976 arg1Of we,sought
R11213 T16975 T16978 arg1Of we,expand
R11214 T16976 T16961 arg1Of sought,After
R11215 T16976 T16974 arg1Of sought,","
R11216 T16978 T16976 arg2Of expand,sought
R11217 T16978 T16977 arg1Of expand,to
R11218 T16978 T16981 arg1Of expand,to
R11219 T16980 T16978 arg2Of study,expand
R11220 T16980 T16979 arg1Of study,our
R11221 T16984 T16981 arg2Of types,to
R11222 T16984 T16982 arg1Of types,other
R11223 T16984 T16983 arg1Of types,cell
R11224 T16984 T16985 arg1Of types,that
R11225 T16984 T16986 arg1Of types,are
R11226 T16984 T16987 arg2Of types,known
R11227 T16984 T16989 arg1Of types,undergo
R11228 T16987 T16986 arg2Of known,are
R11229 T16989 T16987 arg3Of undergo,known
R11230 T16989 T16988 arg1Of undergo,to
R11231 T16992 T16989 arg2Of death,undergo
R11232 T16992 T16990 arg1Of death,necroptotic
R11233 T16992 T16991 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16875 31-35 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17422 31-35 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T17400 66-69 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T17387 66-69 http://www.uniprot.org/uniprot/P31751 denotes Akt
T17374 66-69 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T16902 178-183 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T16896 173-183 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T16893 53-62 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T16927 78-83 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T16827 0-184 Sentence denotes After establishing the role of RIP1 kinase-dependent signaling to Akt in L929 cells, we sought to expand our study to other cell types that are known to undergo necroptotic cell death.
T214 0-184 Sentence denotes After establishing the role of RIP1 kinase-dependent signaling to Akt in L929 cells, we sought to expand our study to other cell types that are known to undergo necroptotic cell death.

simple1

Id Subject Object Predicate Lexical cue
T16935 31-35 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17341 31-35 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17874 31-35 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T17839 31-35 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18103 28-62 Regulation denotes of RIP1 kinase-dependent signaling
T18095 28-62 Positive_regulation denotes of RIP1 kinase-dependent signaling
T18062 66-83 Protein denotes Akt in L929 cells
T18061 115-183 Entity denotes to other cell types that are known to undergo necroptotic cell death
T18038 36-52 Protein denotes kinase-dependent
T18035 31-35 Protein denotes RIP1
R12061 T18035 T18095 causeOf RIP1,of RIP1 kinase-dependent signaling
R12062 T18038 T18103 causeOf kinase-dependent,of RIP1 kinase-dependent signaling
R12079 T18095 T18103 themeOf of RIP1 kinase-dependent signaling,of RIP1 kinase-dependent signaling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17467 183-184 . denotes .
T17466 178-183 NN denotes death
T17465 173-177 NN denotes cell
T17464 161-172 JJ denotes necroptotic
T17463 153-160 VB denotes undergo
T17462 150-152 TO denotes to
T17461 144-149 VBN denotes known
T17460 140-143 VBP denotes are
T17459 135-139 WDT denotes that
T17458 129-134 NNS denotes types
T17457 124-128 NN denotes cell
T17456 118-123 JJ denotes other
T17455 115-117 TO denotes to
T17454 109-114 NN denotes study
T17453 105-108 PRP$ denotes our
T17452 98-104 VB denotes expand
T17451 95-97 TO denotes to
T17450 88-94 VBD denotes sought
T17449 85-87 PRP denotes we
T17448 83-84 , denotes ,
T17447 78-83 NNS denotes cells
T17446 73-77 NNP denotes L929
T17445 70-72 IN denotes in
T17444 66-69 NNP denotes Akt
T17443 63-65 TO denotes to
T17442 53-62 VBG denotes signaling
T17441 36-52 JJ denotes kinase-dependent
T17440 31-35 CD denotes RIP1
T17439 28-30 IN denotes of
T17438 23-27 NN denotes role
T17437 19-22 DT denotes the
T17436 6-18 VBG denotes establishing
T17435 0-5 IN denotes After
R11589 T17435 T17450 prep After,sought
R11590 T17436 T17435 pcomp establishing,After
R11591 T17437 T17438 det the,role
R11592 T17438 T17436 dobj role,establishing
R11593 T17439 T17438 prep of,role
R11594 T17440 T17441 nummod RIP1,kinase-dependent
R11595 T17441 T17439 pobj kinase-dependent,of
R11596 T17442 T17441 acl signaling,kinase-dependent
R11597 T17443 T17442 prep to,signaling
R11598 T17444 T17443 pobj Akt,to
R11599 T17445 T17444 prep in,Akt
R11600 T17446 T17447 compound L929,cells
R11601 T17447 T17445 pobj cells,in
R11602 T17448 T17450 punct ",",sought
R11603 T17449 T17450 nsubj we,sought
R11604 T17450 T17450 ROOT sought,sought
R11605 T17451 T17452 aux to,expand
R11606 T17452 T17450 xcomp expand,sought
R11607 T17453 T17454 poss our,study
R11608 T17454 T17452 dobj study,expand
R11609 T17455 T17452 prep to,expand
R11610 T17456 T17458 amod other,types
R11611 T17457 T17458 compound cell,types
R11612 T17458 T17455 pobj types,to
R11613 T17459 T17461 nsubjpass that,known
R11614 T17460 T17461 auxpass are,known
R11615 T17461 T17458 relcl known,types
R11616 T17462 T17463 aux to,undergo
R11617 T17463 T17461 xcomp undergo,known
R11618 T17464 T17466 amod necroptotic,death
R11619 T17465 T17466 compound cell,death
R11620 T17466 T17463 dobj death,undergo
R11621 T17467 T17450 punct .,sought

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17910 66-69 Protein denotes Akt
T17909 31-42 Protein denotes RIP1 kinase

test3

Id Subject Object Predicate Lexical cue
T16785 31-35 Protein denotes RIP1
T16764 31-35 Protein denotes RIP1