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PMC:3585731 / 33785-34067 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T13496 227-231 Protein denotes TNFα
T13551 219-226 Positive_regulation denotes promote
T13550 158-166 Positive_regulation denotes allowing

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14913 276-281 NN denotes death
T14912 271-275 NN denotes cell
T14911 262-270 JJ denotes eventual
T14910 258-261 CC denotes and
T14909 247-257 NN denotes activation
T14908 243-246 NN denotes JNK
T14907 241-242 -COMMA- denotes ,
T14906 232-241 NN denotes synthesis
T14905 227-231 NN denotes TNFα
T14904 219-226 VB denotes promote
T14903 217-218 -COMMA- denotes ,
T14902 206-217 NN denotes necroptosis
T14901 199-205 IN denotes during
T14900 188-198 NN denotes substrates
T14899 174-187 VB denotes phosphorylate
T14898 171-173 TO denotes to
T14897 167-170 NN denotes Akt
T14896 158-166 VB denotes allowing
T14895 156-157 -COMMA- denotes ,
T14894 150-156 NN denotes kinase
T14893 146-149 NN denotes Akt
T14892 142-145 CC denotes and
T14891 132-141 NN denotes machinery
T14890 120-131 JJ denotes necroptotic
T14889 112-119 IN denotes between
T14888 107-111 NN denotes link
T14887 98-106 JJ denotes critical
T14886 96-97 DT denotes a
T14885 87-95 VB denotes provides
T14884 71-86 NN denotes phosphorylation
T14883 64-70 NN denotes Thr308
T14882 43-63 JJ denotes necroptosis-specific
T14881 38-42 IN denotes that
T14880 35-37 VB denotes is
T14879 33-34 -COMMA- denotes ,
T14878 26-33 NN denotes results
T14877 20-25 DT denotes these
T14876 17-19 IN denotes on
T14875 11-16 VB denotes based
T14874 9-10 -COMMA- denotes ,
T14872 0-3 PRP-DOLLAR- denotes Our
T14873 4-9 NN denotes model
R9868 T14873 T14872 arg1Of model,Our
R9869 T14873 T14874 arg1Of model,","
R9870 T14873 T14875 arg1Of model,based
R9871 T14873 T14880 arg1Of model,is
R9872 T14876 T14875 arg2Of on,based
R9873 T14878 T14876 arg2Of results,on
R9874 T14878 T14877 arg1Of results,these
R9875 T14880 T14879 arg1Of is,","
R9876 T14884 T14882 arg1Of phosphorylation,necroptosis-specific
R9877 T14884 T14883 arg1Of phosphorylation,Thr308
R9878 T14884 T14885 arg1Of phosphorylation,provides
R9879 T14884 T14904 arg1Of phosphorylation,promote
R9880 T14885 T14895 arg1Of provides,","
R9881 T14885 T14896 modOf provides,allowing
R9882 T14885 T14903 arg1Of provides,","
R9883 T14888 T14885 arg2Of link,provides
R9884 T14888 T14886 arg1Of link,a
R9885 T14888 T14887 arg1Of link,critical
R9886 T14888 T14889 arg1Of link,between
R9887 T14891 T14890 arg1Of machinery,necroptotic
R9888 T14891 T14892 arg1Of machinery,and
R9889 T14892 T14889 arg2Of and,between
R9890 T14894 T14892 arg2Of kinase,and
R9891 T14894 T14893 arg1Of kinase,Akt
R9892 T14897 T14896 arg2Of Akt,allowing
R9893 T14897 T14899 arg1Of Akt,phosphorylate
R9894 T14899 T14896 arg3Of phosphorylate,allowing
R9895 T14899 T14898 arg1Of phosphorylate,to
R9896 T14899 T14901 arg1Of phosphorylate,during
R9897 T14900 T14899 arg2Of substrates,phosphorylate
R9898 T14902 T14901 arg2Of necroptosis,during
R9899 T14903 T14880 arg2Of ",",is
R9900 T14903 T14881 arg1Of ",",that
R9901 T14904 T14903 arg2Of promote,","
R9902 T14906 T14905 arg1Of synthesis,TNFα
R9903 T14906 T14907 arg1Of synthesis,","
R9904 T14907 T14910 arg1Of ",",and
R9905 T14909 T14907 arg2Of activation,","
R9906 T14909 T14908 arg1Of activation,JNK
R9907 T14910 T14904 arg2Of and,promote
R9908 T14913 T14910 arg2Of death,and
R9909 T14913 T14911 arg1Of death,eventual
R9910 T14913 T14912 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13877 227-231 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15053 167-170 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15052 146-149 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15018 167-170 http://www.uniprot.org/uniprot/P31749 denotes Akt
T15017 146-149 http://www.uniprot.org/uniprot/P31749 denotes Akt
T15098 227-231 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T15088 167-170 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T15087 146-149 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T13955 232-241 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T13941 243-246 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T13937 71-86 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T13925 276-281 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T13919 271-281 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T13905 206-217 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T13904 43-54 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T13891 206-217 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T13890 43-54 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T13959 243-246 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T13969 271-275 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T13722 0-282 Sentence denotes Our model, based on these results, is that necroptosis-specific Thr308 phosphorylation provides a critical link between necroptotic machinery and Akt kinase, allowing Akt to phosphorylate substrates during necroptosis, promote TNFα synthesis, JNK activation and eventual cell death.
T212 0-282 Sentence denotes Our model, based on these results, is that necroptosis-specific Thr308 phosphorylation provides a critical link between necroptotic machinery and Akt kinase, allowing Akt to phosphorylate substrates during necroptosis, promote TNFα synthesis, JNK activation and eventual cell death.

simple1

Id Subject Object Predicate Lexical cue
T14060 227-231 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14983 232-241 Gene_expression denotes synthesis
T14982 219-226 Positive_regulation denotes promote
T14956 227-231 Protein denotes TNFα
R9940 T14956 T14983 themeOf TNFα,synthesis
R9948 T14983 T14982 themeOf synthesis,promote

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15293 232-241 Gene_expression denotes synthesis
T15292 219-226 Positive_regulation denotes promote
T15270 227-231 Protein denotes TNFα
R10032 T15270 T15293 themeOf TNFα,synthesis
R10041 T15293 T15292 themeOf synthesis,promote

DLUT931

Id Subject Object Predicate Lexical cue
T15143 227-231 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15770 243-257 Positive_regulation denotes JNK activation
T15732 167-170 Protein denotes Akt
T15661 243-246 Protein denotes JNK
T15650 146-156 Protein denotes Akt kinase
T15635 64-70 Entity denotes Thr308
T15615 188-198 Entity denotes substrates
T15731 146-149 Protein denotes Akt
T15726 227-241 Protein denotes TNFα synthesis
R10225 T15661 T15770 themeOf JNK,JNK activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16656 281-282 . denotes .
T16655 276-281 NN denotes death
T16654 271-275 NN denotes cell
T16653 262-270 JJ denotes eventual
T16652 258-261 CC denotes and
T16651 247-257 NN denotes activation
T16650 243-246 NNP denotes JNK
T16649 241-242 , denotes ,
T16648 232-241 NN denotes synthesis
T16647 227-231 NNP denotes TNFα
T16646 219-226 VB denotes promote
T16645 217-218 , denotes ,
T16644 206-217 NN denotes necroptosis
T16643 199-205 IN denotes during
T16642 188-198 NNS denotes substrates
T16641 174-187 VB denotes phosphorylate
T16640 171-173 TO denotes to
T16639 167-170 NNP denotes Akt
T16638 158-166 VBG denotes allowing
T16637 156-157 , denotes ,
T16636 150-156 NN denotes kinase
T16635 146-149 NNP denotes Akt
T16634 142-145 CC denotes and
T16633 132-141 NN denotes machinery
T16632 120-131 JJ denotes necroptotic
T16631 112-119 IN denotes between
T16630 107-111 NN denotes link
T16629 98-106 JJ denotes critical
T16628 96-97 DT denotes a
T16627 87-95 VBZ denotes provides
T16626 71-86 NN denotes phosphorylation
T16625 64-70 NNP denotes Thr308
T16624 43-63 JJ denotes necroptosis-specific
T16623 38-42 IN denotes that
T16622 35-37 VBZ denotes is
T16621 33-34 , denotes ,
T16620 26-33 NNS denotes results
T16619 20-25 DT denotes these
T16618 17-19 IN denotes on
T16617 11-16 VBN denotes based
T16616 9-10 , denotes ,
T16615 4-9 NN denotes model
T16614 0-3 PRP$ denotes Our
R11023 T16641 T16638 ccomp phosphorylate,allowing
R11025 T16642 T16641 dobj substrates,phosphorylate
R11026 T16643 T16641 prep during,phosphorylate
R11027 T16644 T16643 pobj necroptosis,during
R11029 T16645 T16641 punct ",",phosphorylate
R11030 T16646 T16641 dep promote,phosphorylate
R11032 T16647 T16648 compound TNFα,synthesis
R11033 T16648 T16646 dobj synthesis,promote
R11034 T16649 T16641 punct ",",phosphorylate
R11036 T16650 T16651 compound JNK,activation
R11037 T16651 T16641 conj activation,phosphorylate
R11039 T16652 T16651 cc and,activation
R11040 T16653 T16655 amod eventual,death
R11041 T16654 T16655 compound cell,death
R11043 T16655 T16651 conj death,activation
R11044 T16656 T16622 punct .,is
R11102 T16614 T16615 poss Our,model
R11103 T16615 T16622 nsubj model,is
R11104 T16616 T16615 punct ",",model
R11105 T16617 T16615 prep based,model
R11106 T16618 T16617 prep on,based
R11107 T16619 T16620 det these,results
R11108 T16620 T16618 pobj results,on
R11109 T16621 T16615 punct ",",model
R11110 T16622 T16622 ROOT is,is
R11111 T16623 T16627 mark that,provides
R11112 T16624 T16626 amod necroptosis-specific,phosphorylation
R11113 T16625 T16626 compound Thr308,phosphorylation
R11114 T16626 T16627 nsubj phosphorylation,provides
R11115 T16627 T16622 ccomp provides,is
R11116 T16628 T16630 det a,link
R11117 T16629 T16630 amod critical,link
R11118 T16630 T16627 dobj link,provides
R11119 T16631 T16630 prep between,link
R11120 T16632 T16633 amod necroptotic,machinery
R11121 T16633 T16631 pobj machinery,between
R11122 T16634 T16633 cc and,machinery
R11123 T16635 T16636 compound Akt,kinase
R11124 T16636 T16633 conj kinase,machinery
R11125 T16637 T16627 punct ",",provides
R11126 T16638 T16627 advcl allowing,provides
R11127 T16639 T16641 nsubj Akt,phosphorylate
R11128 T16640 T16641 aux to,phosphorylate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15449 247-257 Positive_regulation denotes activation
T15448 247-257 Positive_regulation denotes activation
T15447 232-241 Gene_expression denotes synthesis
T15446 243-246 Protein denotes JNK
T15445 227-231 Protein denotes TNFα
T15444 167-170 Protein denotes Akt
T15443 146-156 Protein denotes Akt kinase
R10123 T15445 T15447 themeOf TNFα,synthesis
R10124 T15446 T15448 themeOf JNK,activation
R10125 T15447 T15449 themeOf synthesis,activation

test3

Id Subject Object Predicate Lexical cue
T13688 232-241 Gene_expression denotes synthesis
T13687 227-231 Protein denotes TNFα
T13686 219-226 Positive_regulation denotes promote
T13685 174-187 Phosphorylation denotes phosphorylate
T13684 158-166 Positive_regulation denotes allowing
T13594 227-231 Protein denotes TNFα
R8962 T13685 T13684 themeOf phosphorylate,allowing
R8963 T13685 T13686 causeOf phosphorylate,promote
R8964 T13687 T13688 themeOf TNFα,synthesis
R8965 T13688 T13686 themeOf synthesis,promote