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PMC:3585731 / 328-568 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T14 147-151 Protein denotes RIP1
T13 115-145 Protein denotes receptor interacting protein-1
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T228 236-239 CC denotes and
T227 230-235 NN denotes cells
T226 225-229 NN denotes L929
T225 222-224 IN denotes in
T224 210-221 NN denotes necroptosis
T223 206-209 IN denotes for
T222 197-205 JJ denotes critical
T221 194-196 VB denotes is
T220 185-193 NN denotes activity
T219 178-184 NN denotes kinase
T218 174-177 NN denotes Akt
T217 169-173 IN denotes that
T216 164-168 VB denotes show
T215 161-163 PRP denotes We
T214 153-159 NN denotes kinase
T213 151-152 -RRB- denotes )
T212 147-151 NN denotes RIP1
T211 146-147 -LRB- denotes (
T210 136-145 NN denotes protein-1
T209 124-135 NN denotes interacting
T208 115-123 NN denotes receptor
T207 106-114 NN denotes mediator
T206 94-105 NN denotes necroptosis
T205 90-93 DT denotes the
T204 87-89 IN denotes by
T203 76-86 VB denotes controlled
T202 65-75 NN denotes mechanisms
T201 55-64 NN denotes signaling
T200 51-54 DT denotes the
T199 38-50 VB denotes investigated
T198 35-37 PRP denotes we
T197 33-34 -COMMA- denotes ,
T196 29-33 NN denotes work
T195 24-28 DT denotes this
T194 21-23 IN denotes In
T193 18-19 -RRB- denotes )
T192 14-18 NN denotes SIRS
T191 13-14 -LRB- denotes (
T190 4-12 NN denotes syndrome
R53 T190 T191 arg1Of syndrome,(
R54 T192 T191 arg2Of SIRS,(
R55 T193 T191 arg3Of ),(
R56 T196 T194 arg2Of work,In
R57 T196 T195 arg1Of work,this
R58 T198 T199 arg1Of we,investigated
R59 T199 T194 arg1Of investigated,In
R60 T199 T197 arg1Of investigated,","
R61 T202 T199 arg2Of mechanisms,investigated
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 115-145 Protein denotes receptor interacting protein-1
T91 147-151 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 147-151 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T395 174-177 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T388 174-177 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 174-177 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 178-193 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T127 55-64 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T110 210-221 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T109 94-105 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T102 210-221 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T101 94-105 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 178-193 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T62 21-160 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T5 21-160 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.

simple1

Id Subject Object Predicate Lexical cue
T145 115-145 Protein denotes receptor interacting protein-1
T146 147-151 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 115-145 Protein denotes receptor interacting protein-1
T356 147-151 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 115-145 Protein denotes receptor interacting protein-1
T444 147-151 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T412 115-145 Protein denotes receptor interacting protein-1
T413 147-151 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T748 87-159 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 147-151 Protein denotes RIP1
T743 174-177 Protein denotes Akt
T742 174-184 Protein denotes Akt kinase
T736 115-152 Protein denotes receptor interacting protein-1 (RIP1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T533 35-37 PRP denotes we
T532 33-34 , denotes ,
T531 29-33 NN denotes work
T530 24-28 DT denotes this
T529 21-23 IN denotes In
T528 19-20 . denotes .
T527 18-19 -RRB- denotes )
T526 14-18 NNP denotes SIRS
T525 13-14 -LRB- denotes (
T524 4-12 NN denotes syndrome
T564 236-239 CC denotes and
T563 230-235 NNS denotes cells
T562 225-229 CD denotes L929
T561 222-224 IN denotes in
T560 210-221 NN denotes necroptosis
T559 206-209 IN denotes for
T558 197-205 JJ denotes critical
T557 194-196 VBZ denotes is
T556 185-193 NN denotes activity
T555 178-184 NN denotes kinase
T554 174-177 NNP denotes Akt
T553 169-173 IN denotes that
T552 164-168 VBP denotes show
T551 161-163 PRP denotes We
T550 159-160 . denotes .
T549 153-159 NN denotes kinase
T548 151-152 -RRB- denotes )
T547 147-151 CD denotes RIP1
T546 146-147 -LRB- denotes (
T545 136-145 NN denotes protein-1
T544 124-135 VBG denotes interacting
T543 115-123 NN denotes receptor
T542 106-114 NN denotes mediator
T541 94-105 NN denotes necroptosis
T540 90-93 DT denotes the
T539 87-89 IN denotes by
T538 76-86 VBN denotes controlled
T537 65-75 NNS denotes mechanisms
T536 55-64 VBG denotes signaling
T535 51-54 DT denotes the
T534 38-50 VBD denotes investigated
R265 T525 T524 punct (,syndrome
R266 T526 T524 appos SIRS,syndrome
R267 T527 T524 punct ),syndrome
R269 T529 T534 prep In,investigated
R270 T530 T531 det this,work
R271 T531 T529 pobj work,In
R272 T532 T534 punct ",",investigated
R273 T533 T534 nsubj we,investigated
R274 T534 T534 ROOT investigated,investigated
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R277 T537 T534 dobj mechanisms,investigated
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R290 T550 T534 punct .,investigated
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T466 174-184 Protein denotes Akt kinase
T465 76-86 Regulation denotes controlled
T464 76-86 Regulation denotes controlled
T463 147-151 Protein denotes RIP1
T462 106-145 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled

test3

Id Subject Object Predicate Lexical cue
T45 147-151 Protein denotes RIP1
T44 115-145 Protein denotes receptor interacting protein-1
T43 76-86 Regulation denotes controlled
T32 147-151 Protein denotes RIP1
T31 115-145 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1