PMC:3585731 / 3209-3372 JSONTXT

{"project":"testone","denotations":[{"id":"T5056","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T814","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T803","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T802","span":{"begin":99,"end":103},"obj":"Protein"}],"relations":[{"id":"R496","pred":"themeOf","subj":"T803","obj":"T814"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"pmc-enju-pas","denotations":[{"id":"T5554","span":{"begin":99,"end":103},"obj":"NN"},{"id":"T1443","span":{"begin":159,"end":162},"obj":"VB"},{"id":"T1442","span":{"begin":148,"end":158},"obj":"NN"},{"id":"T1441","span":{"begin":143,"end":147},"obj":"NN"},{"id":"T1440","span":{"begin":139,"end":142},"obj":"CC"},{"id":"T1439","span":{"begin":135,"end":138},"obj":"NN"},{"id":"T1438","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T1437","span":{"begin":121,"end":131},"obj":"NN"},{"id":"T1436","span":{"begin":111,"end":120},"obj":"JJ"},{"id":"T1435","span":{"begin":104,"end":110},"obj":"NN"},{"id":"T1434","span":{"begin":99,"end":103},"obj":"NN"},{"id":"T1433","span":{"begin":97,"end":98},"obj":"-COMMA-"},{"id":"T1432","span":{"begin":86,"end":97},"obj":"RB"},{"id":"T1431","span":{"begin":73,"end":84},"obj":"NN"},{"id":"T1430","span":{"begin":70,"end":72},"obj":"TO"},{"id":"T1429","span":{"begin":59,"end":69},"obj":"VB"},{"id":"T1428","span":{"begin":53,"end":58},"obj":"WDT"},{"id":"T1427","span":{"begin":50,"end":52},"obj":"IN"},{"id":"T1426","span":{"begin":46,"end":49},"obj":"DT"},{"id":"T1425","span":{"begin":44,"end":45},"obj":"-COMMA-"},{"id":"T1424","span":{"begin":35,"end":44},"obj":"NN"},{"id":"T1423","span":{"begin":32,"end":34},"obj":"IN"},{"id":"T1422","span":{"begin":22,"end":31},"obj":"NN"},{"id":"T1421","span":{"begin":18,"end":21},"obj":"CC"},{"id":"T1420","span":{"begin":11,"end":17},"obj":"NN"},{"id":"T1419","span":{"begin":1,"end":10},"obj":"JJ"}],"relations":[{"id":"R859","pred":"arg1Of","subj":"T1420","obj":"T1419"},{"id":"R861","pred":"arg1Of","subj":"T1421","obj":"T1425"},{"id":"R862","pred":"arg2Of","subj":"T1421","obj":"T1427"},{"id":"R863","pred":"arg1Of","subj":"T1421","obj":"T1428"},{"id":"R864","pred":"arg2Of","subj":"T1422","obj":"T1421"},{"id":"R865","pred":"arg1Of","subj":"T1422","obj":"T1423"},{"id":"R866","pred":"arg2Of","subj":"T1424","obj":"T1423"},{"id":"R867","pred":"arg1Of","subj":"T1426","obj":"T1427"},{"id":"R868","pred":"arg1Of","subj":"T1426","obj":"T1429"},{"id":"R869","pred":"arg1Of","subj":"T1429","obj":"T1430"},{"id":"R870","pred":"arg2Of","subj":"T1431","obj":"T1430"},{"id":"R871","pred":"arg1Of","subj":"T1436","obj":"T1434"},{"id":"R872","pred":"arg1Of","subj":"T1436","obj":"T1435"},{"id":"R873","pred":"arg1Of","subj":"T1437","obj":"T1436"},{"id":"R874","pred":"arg1Of","subj":"T1437","obj":"T1438"},{"id":"R875","pred":"arg1Of","subj":"T1437","obj":"T1443"},{"id":"R880","pred":"arg1Of","subj":"T1439","obj":"T1440"},{"id":"R881","pred":"arg2Of","subj":"T1440","obj":"T1438"},{"id":"R882","pred":"arg2Of","subj":"T1442","obj":"T1440"},{"id":"R883","pred":"arg1Of","subj":"T1442","obj":"T1441"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T940","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T939","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T5367","span":{"begin":99,"end":103},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T6429","span":{"begin":99,"end":103},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T1807","span":{"begin":143,"end":147},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T1800","span":{"begin":99,"end":103},"obj":"http://www.uniprot.org/uniprot/Q13546"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"GO-BP","denotations":[{"id":"T1041","span":{"begin":35,"end":44},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T1040","span":{"begin":1,"end":31},"obj":"http://purl.obolibrary.org/obo/GO_0008631"},{"id":"T1033","span":{"begin":135,"end":138},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T978","span":{"begin":73,"end":84},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T959","span":{"begin":73,"end":84},"obj":"http://purl.obolibrary.org/obo/GO_0070266"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"GO-MF","denotations":[{"id":"T1052","span":{"begin":135,"end":138},"obj":"http://purl.obolibrary.org/obo/GO_0004705"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"simple1","denotations":[{"id":"T5520","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T1074","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T1073","span":{"begin":99,"end":103},"obj":"Protein"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"BioNLP16_DUT","denotations":[{"id":"T1771","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T1758","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T1757","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T6379","span":{"begin":99,"end":103},"obj":"Protein"}],"relations":[{"id":"R1202","pred":"themeOf","subj":"T1758","obj":"T1771"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"BioNLP16_Messiy","denotations":[{"id":"T2144","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T2141","span":{"begin":22,"end":31},"obj":"Positive_regulation"},{"id":"T2130","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T2129","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T6660","span":{"begin":99,"end":103},"obj":"Protein"}],"relations":[{"id":"R1455","pred":"themeOf","subj":"T2130","obj":"T2144"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"DLUT931","denotations":[{"id":"T6540","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T1891","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T1890","span":{"begin":22,"end":31},"obj":"Positive_regulation"},{"id":"T1877","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T1876","span":{"begin":99,"end":103},"obj":"Protein"}],"relations":[{"id":"R1217","pred":"themeOf","subj":"T1877","obj":"T1891"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T7185","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T2800","span":{"begin":143,"end":158},"obj":"Gene_expression"},{"id":"T2791","span":{"begin":104,"end":120},"obj":"Protein"},{"id":"T2771","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T2746","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T2734","span":{"begin":135,"end":138},"obj":"Protein"}],"relations":[{"id":"R1959","pred":"themeOf","subj":"T2746","obj":"T2800"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2355","span":{"begin":159,"end":162},"obj":"VBZ"},{"id":"T2354","span":{"begin":148,"end":158},"obj":"NN"},{"id":"T2353","span":{"begin":143,"end":147},"obj":"NNP"},{"id":"T2352","span":{"begin":139,"end":142},"obj":"CC"},{"id":"T2351","span":{"begin":135,"end":138},"obj":"NNP"},{"id":"T2350","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T2349","span":{"begin":121,"end":131},"obj":"NN"},{"id":"T2348","span":{"begin":111,"end":120},"obj":"JJ"},{"id":"T2347","span":{"begin":104,"end":110},"obj":"NN"},{"id":"T2346","span":{"begin":99,"end":103},"obj":"NNP"},{"id":"T2345","span":{"begin":97,"end":98},"obj":","},{"id":"T2344","span":{"begin":86,"end":97},"obj":"RB"},{"id":"T2343","span":{"begin":84,"end":85},"obj":"."},{"id":"T2342","span":{"begin":73,"end":84},"obj":"NN"},{"id":"T2341","span":{"begin":70,"end":72},"obj":"TO"},{"id":"T2340","span":{"begin":59,"end":69},"obj":"VBP"},{"id":"T2339","span":{"begin":53,"end":58},"obj":"WDT"},{"id":"T2338","span":{"begin":50,"end":52},"obj":"IN"},{"id":"T2337","span":{"begin":46,"end":49},"obj":"DT"},{"id":"T2336","span":{"begin":44,"end":45},"obj":","},{"id":"T2335","span":{"begin":35,"end":44},"obj":"NN"},{"id":"T2334","span":{"begin":32,"end":34},"obj":"IN"},{"id":"T2333","span":{"begin":22,"end":31},"obj":"NN"},{"id":"T2332","span":{"begin":18,"end":21},"obj":"CC"},{"id":"T2331","span":{"begin":11,"end":17},"obj":"NN"},{"id":"T2330","span":{"begin":1,"end":10},"obj":"JJ"}],"relations":[{"id":"R1572","pred":"amod","subj":"T2330","obj":"T2331"},{"id":"R1580","pred":"cc","subj":"T2332","obj":"T2331"},{"id":"R1584","pred":"conj","subj":"T2333","obj":"T2331"},{"id":"R1588","pred":"prep","subj":"T2334","obj":"T2333"},{"id":"R1592","pred":"pobj","subj":"T2335","obj":"T2334"},{"id":"R1596","pred":"punct","subj":"T2336","obj":"T2340"},{"id":"R1600","pred":"nsubj","subj":"T2337","obj":"T2340"},{"id":"R1604","pred":"prep","subj":"T2338","obj":"T2337"},{"id":"R1605","pred":"pobj","subj":"T2339","obj":"T2338"},{"id":"R1615","pred":"aux","subj":"T2341","obj":"T2342"},{"id":"R1618","pred":"xcomp","subj":"T2342","obj":"T2340"},{"id":"R1620","pred":"punct","subj":"T2343","obj":"T2340"},{"id":"R1625","pred":"amod","subj":"T2347","obj":"T2349"},{"id":"R1629","pred":"amod","subj":"T2348","obj":"T2349"},{"id":"R1633","pred":"appos","subj":"T2349","obj":"T2346"},{"id":"R1637","pred":"prep","subj":"T2350","obj":"T2349"},{"id":"R1640","pred":"pobj","subj":"T2351","obj":"T2350"},{"id":"R1644","pred":"cc","subj":"T2352","obj":"T2351"},{"id":"R1648","pred":"compound","subj":"T2353","obj":"T2354"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T6709","span":{"begin":99,"end":110},"obj":"Protein"},{"id":"T2175","span":{"begin":121,"end":131},"obj":"Positive_regulation"},{"id":"T2174","span":{"begin":121,"end":131},"obj":"Positive_regulation"},{"id":"T2173","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T2172","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T2171","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T2170","span":{"begin":135,"end":138},"obj":"Protein"},{"id":"T2169","span":{"begin":99,"end":110},"obj":"Protein"}],"relations":[{"id":"R1460","pred":"themeOf","subj":"T2170","obj":"T2172"},{"id":"R1465","pred":"themeOf","subj":"T2171","obj":"T2173"},{"id":"R1468","pred":"themeOf","subj":"T2172","obj":"T2174"},{"id":"R1470","pred":"themeOf","subj":"T2173","obj":"T2175"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}

{"project":"test3","denotations":[{"id":"T5186","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T5152","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T834","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T833","span":{"begin":99,"end":103},"obj":"Protein"},{"id":"T854","span":{"begin":148,"end":158},"obj":"Gene_expression"},{"id":"T853","span":{"begin":143,"end":147},"obj":"Protein"},{"id":"T852","span":{"begin":99,"end":103},"obj":"Protein"}],"relations":[{"id":"R505","pred":"themeOf","subj":"T853","obj":"T854"}],"text":" oxidative stress and induction of autophagy, all of which contribute to necroptosis. Importantly, RIP1 kinase dependent activation of JNK and TNFα production has "}