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PMC:3585731 / 3175-3385 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5056 133-137 Protein denotes RIP1
T814 182-192 Gene_expression denotes production
T803 177-181 Protein denotes TNFα
T802 133-137 Protein denotes RIP1
T801 5-9 Protein denotes TNFα
R496 T803 T814 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5554 133-137 NN denotes RIP1
T1445 206-210 VB denotes been
T1444 197-205 RB denotes recently
T1443 193-196 VB denotes has
T1442 182-192 NN denotes production
T1441 177-181 NN denotes TNFα
T1440 173-176 CC denotes and
T1439 169-172 NN denotes JNK
T1438 166-168 IN denotes of
T1437 155-165 NN denotes activation
T1436 145-154 JJ denotes dependent
T1435 138-144 NN denotes kinase
T1434 133-137 NN denotes RIP1
T1433 131-132 -COMMA- denotes ,
T1432 120-131 RB denotes Importantly
T1431 107-118 NN denotes necroptosis
T1430 104-106 TO denotes to
T1429 93-103 VB denotes contribute
T1428 87-92 WDT denotes which
T1427 84-86 IN denotes of
T1426 80-83 DT denotes all
T1425 78-79 -COMMA- denotes ,
T1424 69-78 NN denotes autophagy
T1423 66-68 IN denotes of
T1422 56-65 NN denotes induction
T1421 52-55 CC denotes and
T1420 45-51 NN denotes stress
T1419 35-44 JJ denotes oxidative
T1418 32-34 IN denotes of
T1417 21-31 NN denotes activation
T1416 19-20 -COMMA- denotes ,
T1415 10-19 NN denotes synthesis
T1414 5-9 NN denotes TNFα
R853 T1415 T1414 arg1Of synthesis,TNFα
R854 T1415 T1416 arg1Of synthesis,","
R855 T1416 T1421 arg1Of ",",and
R856 T1417 T1416 arg2Of activation,","
R857 T1417 T1418 arg1Of activation,of
R858 T1420 T1418 arg2Of stress,of
R859 T1420 T1419 arg1Of stress,oxidative
R861 T1421 T1425 arg1Of and,","
R862 T1421 T1427 arg2Of and,of
R863 T1421 T1428 arg1Of and,which
R864 T1422 T1421 arg2Of induction,and
R865 T1422 T1423 arg1Of induction,of
R866 T1424 T1423 arg2Of autophagy,of
R867 T1426 T1427 arg1Of all,of
R868 T1426 T1429 arg1Of all,contribute
R869 T1429 T1430 arg1Of contribute,to
R870 T1431 T1430 arg2Of necroptosis,to
R871 T1436 T1434 arg1Of dependent,RIP1
R872 T1436 T1435 arg1Of dependent,kinase
R873 T1437 T1436 arg1Of activation,dependent
R874 T1437 T1438 arg1Of activation,of
R875 T1437 T1443 arg1Of activation,has
R876 T1437 T1445 arg1Of activation,been
R880 T1439 T1440 arg1Of JNK,and
R881 T1440 T1438 arg2Of and,of
R882 T1442 T1440 arg2Of production,and
R883 T1442 T1441 arg1Of production,TNFα

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T940 177-181 Protein denotes TNFα
T939 133-137 Protein denotes RIP1
T938 5-9 Protein denotes TNFα
T5367 133-137 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6429 133-137 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T1807 177-181 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T1806 5-9 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T1800 133-137 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T1041 69-78 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T1040 35-65 http://purl.obolibrary.org/obo/GO_0008631 denotes oxidative stress and induction
T1039 21-51 http://purl.obolibrary.org/obo/GO_1902884 denotes activation of oxidative stress
T1038 10-19 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T1033 169-172 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T978 107-118 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T959 107-118 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T1052 169-172 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

simple1

Id Subject Object Predicate Lexical cue
T5520 133-137 Protein denotes RIP1
T1074 177-181 Protein denotes TNFα
T1073 133-137 Protein denotes RIP1
T1072 5-9 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1771 182-192 Gene_expression denotes production
T1770 10-19 Gene_expression denotes synthesis
T1758 177-181 Protein denotes TNFα
T1757 133-137 Protein denotes RIP1
T1756 5-9 Protein denotes TNFα
T6379 133-137 Protein denotes RIP1
R1201 T1756 T1770 themeOf TNFα,synthesis
R1202 T1758 T1771 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2144 182-192 Gene_expression denotes production
T2143 10-19 Gene_expression denotes synthesis
T2142 21-31 Positive_regulation denotes activation
T2141 56-65 Positive_regulation denotes induction
T2130 177-181 Protein denotes TNFα
T2129 133-137 Protein denotes RIP1
T2128 5-9 Protein denotes TNFα
T6660 133-137 Protein denotes RIP1
R1453 T2128 T2143 themeOf TNFα,synthesis
R1455 T2130 T2144 themeOf TNFα,production
R1463 T2143 T2142 themeOf synthesis,activation
R1464 T2143 T2141 themeOf synthesis,induction

DLUT931

Id Subject Object Predicate Lexical cue
T6540 133-137 Protein denotes RIP1
T1891 182-192 Gene_expression denotes production
T1890 56-65 Positive_regulation denotes induction
T1889 21-31 Positive_regulation denotes activation
T1888 10-19 Gene_expression denotes synthesis
T1877 177-181 Protein denotes TNFα
T1876 133-137 Protein denotes RIP1
T1875 5-9 Protein denotes TNFα
R1216 T1875 T1888 themeOf TNFα,synthesis
R1217 T1877 T1891 themeOf TNFα,production
R1223 T1888 T1889 themeOf synthesis,activation
R1224 T1888 T1890 themeOf synthesis,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7185 133-137 Protein denotes RIP1
T2800 177-192 Gene_expression denotes TNFα production
T2791 138-154 Protein denotes kinase dependent
T2771 133-137 Protein denotes RIP1
T2746 177-181 Protein denotes TNFα
T2734 169-172 Protein denotes JNK
R1959 T2746 T2800 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2357 206-210 VBN denotes been
T2356 197-205 RB denotes recently
T2355 193-196 VBZ denotes has
T2354 182-192 NN denotes production
T2353 177-181 NNP denotes TNFα
T2352 173-176 CC denotes and
T2351 169-172 NNP denotes JNK
T2350 166-168 IN denotes of
T2349 155-165 NN denotes activation
T2348 145-154 JJ denotes dependent
T2347 138-144 NN denotes kinase
T2346 133-137 NNP denotes RIP1
T2345 131-132 , denotes ,
T2344 120-131 RB denotes Importantly
T2343 118-119 . denotes .
T2342 107-118 NN denotes necroptosis
T2341 104-106 TO denotes to
T2340 93-103 VBP denotes contribute
T2339 87-92 WDT denotes which
T2338 84-86 IN denotes of
T2337 80-83 DT denotes all
T2336 78-79 , denotes ,
T2335 69-78 NN denotes autophagy
T2334 66-68 IN denotes of
T2333 56-65 NN denotes induction
T2332 52-55 CC denotes and
T2331 45-51 NN denotes stress
T2330 35-44 JJ denotes oxidative
T2329 32-34 IN denotes of
T2328 21-31 NN denotes activation
T2327 19-20 , denotes ,
T2326 10-19 NN denotes synthesis
T2325 5-9 NNP denotes TNFα
R1550 T2325 T2326 compound TNFα,synthesis
R1561 T2327 T2326 punct ",",synthesis
R1569 T2329 T2328 prep of,activation
R1572 T2330 T2331 amod oxidative,stress
R1576 T2331 T2329 pobj stress,of
R1580 T2332 T2331 cc and,stress
R1584 T2333 T2331 conj induction,stress
R1588 T2334 T2333 prep of,induction
R1592 T2335 T2334 pobj autophagy,of
R1596 T2336 T2340 punct ",",contribute
R1600 T2337 T2340 nsubj all,contribute
R1604 T2338 T2337 prep of,all
R1605 T2339 T2338 pobj which,of
R1615 T2341 T2342 aux to,necroptosis
R1618 T2342 T2340 xcomp necroptosis,contribute
R1620 T2343 T2340 punct .,contribute
R1625 T2347 T2349 amod kinase,activation
R1629 T2348 T2349 amod dependent,activation
R1633 T2349 T2346 appos activation,RIP1
R1637 T2350 T2349 prep of,activation
R1640 T2351 T2350 pobj JNK,of
R1644 T2352 T2351 cc and,JNK
R1648 T2353 T2354 compound TNFα,production

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6709 133-144 Protein denotes RIP1 kinase
T2175 155-165 Positive_regulation denotes activation
T2174 155-165 Positive_regulation denotes activation
T2173 182-192 Gene_expression denotes production
T2172 182-192 Gene_expression denotes production
T2171 177-181 Protein denotes TNFα
T2170 169-172 Protein denotes JNK
T2169 133-144 Protein denotes RIP1 kinase
T2168 10-19 Gene_expression denotes synthesis
R1460 T2170 T2172 themeOf JNK,production
R1465 T2171 T2173 themeOf TNFα,production
R1468 T2172 T2174 themeOf production,activation
R1470 T2173 T2175 themeOf production,activation

test3

Id Subject Object Predicate Lexical cue
T5186 133-137 Protein denotes RIP1
T5152 133-137 Protein denotes RIP1
T834 177-181 Protein denotes TNFα
T833 133-137 Protein denotes RIP1
T832 5-9 Protein denotes TNFα
T854 182-192 Gene_expression denotes production
T853 177-181 Protein denotes TNFα
T852 133-137 Protein denotes RIP1
T851 5-9 Protein denotes TNFα
R505 T853 T854 themeOf TNFα,production