> top > docs > PMC:3585731 > spans > 3119-3254 > annotations

PMC:3585731 / 3119-3254 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T801 61-65 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1425 134-135 -COMMA- denotes ,
T1424 125-134 NN denotes autophagy
T1423 122-124 IN denotes of
T1422 112-121 NN denotes induction
T1421 108-111 CC denotes and
T1420 101-107 NN denotes stress
T1419 91-100 JJ denotes oxidative
T1418 88-90 IN denotes of
T1417 77-87 NN denotes activation
T1416 75-76 -COMMA- denotes ,
T1415 66-75 NN denotes synthesis
T1414 61-65 NN denotes TNFα
T1413 51-60 JJ denotes autocrine
T1412 48-50 TO denotes to
T1411 41-47 VB denotes linked
T1410 36-40 VB denotes been
T1409 32-35 VB denotes has
T1408 26-31 NN denotes cells
T1407 21-25 NN denotes L929
T1406 18-20 IN denotes in
T1405 14-17 NN denotes JNK
T1404 11-13 IN denotes of
T1403 0-10 NN denotes Activation
R841 T1403 T1404 arg1Of Activation,of
R842 T1403 T1406 arg1Of Activation,in
R843 T1403 T1409 arg1Of Activation,has
R844 T1403 T1410 arg1Of Activation,been
R845 T1403 T1411 arg2Of Activation,linked
R846 T1405 T1404 arg2Of JNK,of
R847 T1408 T1406 arg2Of cells,in
R848 T1408 T1407 arg1Of cells,L929
R849 T1411 T1409 arg2Of linked,has
R850 T1411 T1410 arg2Of linked,been
R851 T1411 T1412 arg1Of linked,to
R852 T1415 T1413 arg1Of synthesis,autocrine
R853 T1415 T1414 arg1Of synthesis,TNFα
R854 T1415 T1416 arg1Of synthesis,","
R855 T1416 T1421 arg1Of ",",and
R856 T1417 T1416 arg2Of activation,","
R857 T1417 T1418 arg1Of activation,of
R858 T1420 T1418 arg2Of stress,of
R859 T1420 T1419 arg1Of stress,oxidative
R860 T1421 T1412 arg2Of and,to
R861 T1421 T1425 arg1Of and,","
R864 T1422 T1421 arg2Of induction,and
R865 T1422 T1423 arg1Of induction,of
R866 T1424 T1423 arg2Of autophagy,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T938 61-65 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1806 61-65 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T1041 125-134 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T1040 91-121 http://purl.obolibrary.org/obo/GO_0008631 denotes oxidative stress and induction
T1039 77-107 http://purl.obolibrary.org/obo/GO_1902884 denotes activation of oxidative stress
T1038 66-75 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T1032 14-17 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T1051 14-17 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

simple1

Id Subject Object Predicate Lexical cue
T1072 61-65 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1770 66-75 Gene_expression denotes synthesis
T1756 61-65 Protein denotes TNFα
R1201 T1756 T1770 themeOf TNFα,synthesis

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2143 66-75 Gene_expression denotes synthesis
T2142 77-87 Positive_regulation denotes activation
T2141 112-121 Positive_regulation denotes induction
T2128 61-65 Protein denotes TNFα
R1453 T2128 T2143 themeOf TNFα,synthesis
R1463 T2143 T2142 themeOf synthesis,activation
R1464 T2143 T2141 themeOf synthesis,induction

DLUT931

Id Subject Object Predicate Lexical cue
T1890 112-121 Positive_regulation denotes induction
T1889 77-87 Positive_regulation denotes activation
T1888 66-75 Gene_expression denotes synthesis
T1875 61-65 Protein denotes TNFα
R1216 T1875 T1888 themeOf TNFα,synthesis
R1223 T1888 T1889 themeOf synthesis,activation
R1224 T1888 T1890 themeOf synthesis,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2796 0-31 Positive_regulation denotes Activation of JNK in L929 cells
T2795 0-135 Binding denotes Activation of JNK in L929 cells has been linked to autocrine TNFα synthesis, activation of oxidative stress and induction of autophagy,
T2750 11-17 Protein denotes of JNK
T2733 48-135 Protein denotes to autocrine TNFα synthesis, activation of oxidative stress and induction of autophagy,
R1953 T2733 T2795 themeOf "to autocrine TNFα synthesis, activation of oxidative stress and induction of autophagy,","Activation of JNK in L929 cells has been linked to autocrine TNFα synthesis, activation of oxidative stress and induction of autophagy,"
R1962 T2750 T2796 themeOf of JNK,Activation of JNK in L929 cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2336 134-135 , denotes ,
T2335 125-134 NN denotes autophagy
T2334 122-124 IN denotes of
T2333 112-121 NN denotes induction
T2332 108-111 CC denotes and
T2331 101-107 NN denotes stress
T2330 91-100 JJ denotes oxidative
T2329 88-90 IN denotes of
T2328 77-87 NN denotes activation
T2327 75-76 , denotes ,
T2326 66-75 NN denotes synthesis
T2325 61-65 NNP denotes TNFα
T2324 51-60 VB denotes autocrine
T2323 48-50 TO denotes to
T2322 41-47 VBN denotes linked
T2321 36-40 VBN denotes been
T2320 32-35 VBZ denotes has
T2319 26-31 NNS denotes cells
T2318 21-25 NNP denotes L929
T2317 18-20 IN denotes in
T2316 14-17 NNP denotes JNK
T2315 11-13 IN denotes of
T2314 0-10 NNP denotes Activation
R1508 T2314 T2322 nsubjpass Activation,linked
R1511 T2315 T2314 prep of,Activation
R1514 T2316 T2315 pobj JNK,of
R1518 T2317 T2314 prep in,Activation
R1522 T2318 T2319 compound L929,cells
R1526 T2319 T2317 pobj cells,in
R1530 T2320 T2322 aux has,linked
R1533 T2321 T2322 auxpass been,linked
R1537 T2322 T2322 ROOT linked,linked
R1542 T2323 T2324 aux to,autocrine
R1546 T2324 T2322 xcomp autocrine,linked
R1550 T2325 T2326 compound TNFα,synthesis
R1554 T2326 T2324 dobj synthesis,autocrine
R1561 T2327 T2326 punct ",",synthesis
R1565 T2328 T2324 conj activation,autocrine
R1569 T2329 T2328 prep of,activation
R1572 T2330 T2331 amod oxidative,stress
R1576 T2331 T2329 pobj stress,of
R1580 T2332 T2331 cc and,stress
R1584 T2333 T2331 conj induction,stress
R1588 T2334 T2333 prep of,induction
R1592 T2335 T2334 pobj autophagy,of

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2168 66-75 Gene_expression denotes synthesis
T2167 0-10 Positive_regulation denotes Activation
T2166 51-65 Protein denotes autocrine TNFα
T2165 14-17 Protein denotes JNK
R1457 T2165 T2167 themeOf JNK,Activation
R1459 T2166 T2168 themeOf autocrine TNFα,synthesis

test3

Id Subject Object Predicate Lexical cue
T832 61-65 Protein denotes TNFα
T851 61-65 Protein denotes TNFα