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PMC:3585731 / 300-521 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T14 175-179 Protein denotes RIP1
T13 143-173 Protein denotes receptor interacting protein-1
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T220 213-221 NN denotes activity
T219 206-212 NN denotes kinase
T218 202-205 NN denotes Akt
T217 197-201 IN denotes that
T216 192-196 VB denotes show
T215 189-191 PRP denotes We
T214 181-187 NN denotes kinase
T213 179-180 -RRB- denotes )
T212 175-179 NN denotes RIP1
T211 174-175 -LRB- denotes (
T210 164-173 NN denotes protein-1
T209 152-163 NN denotes interacting
T208 143-151 NN denotes receptor
T207 134-142 NN denotes mediator
T206 122-133 NN denotes necroptosis
T205 118-121 DT denotes the
T204 115-117 IN denotes by
T203 104-114 VB denotes controlled
T202 93-103 NN denotes mechanisms
T201 83-92 NN denotes signaling
T200 79-82 DT denotes the
T199 66-78 VB denotes investigated
T198 63-65 PRP denotes we
T197 61-62 -COMMA- denotes ,
T196 57-61 NN denotes work
T195 52-56 DT denotes this
T194 49-51 IN denotes In
T193 46-47 -RRB- denotes )
T192 42-46 NN denotes SIRS
T191 41-42 -LRB- denotes (
T190 32-40 NN denotes syndrome
T189 23-31 NN denotes response
T188 10-22 JJ denotes inflammatory
T187 1-9 JJ denotes systemic
R50 T190 T187 arg1Of syndrome,systemic
R51 T190 T188 arg1Of syndrome,inflammatory
R52 T190 T189 arg1Of syndrome,response
R53 T190 T191 arg1Of syndrome,(
R54 T192 T191 arg2Of SIRS,(
R55 T193 T191 arg3Of ),(
R56 T196 T194 arg2Of work,In
R57 T196 T195 arg1Of work,this
R58 T198 T199 arg1Of we,investigated
R59 T199 T194 arg1Of investigated,In
R60 T199 T197 arg1Of investigated,","
R61 T202 T199 arg2Of mechanisms,investigated
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 143-173 Protein denotes receptor interacting protein-1
T91 175-179 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 175-179 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T395 202-205 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T388 202-205 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 202-205 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 206-221 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T127 83-92 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T126 10-31 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T109 122-133 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T101 122-133 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 206-221 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T62 49-188 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T5 49-188 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.

simple1

Id Subject Object Predicate Lexical cue
T145 143-173 Protein denotes receptor interacting protein-1
T146 175-179 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 143-173 Protein denotes receptor interacting protein-1
T356 175-179 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 143-173 Protein denotes receptor interacting protein-1
T444 175-179 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T412 143-173 Protein denotes receptor interacting protein-1
T413 175-179 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T748 115-187 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 175-179 Protein denotes RIP1
T743 202-205 Protein denotes Akt
T742 202-212 Protein denotes Akt kinase
T736 143-180 Protein denotes receptor interacting protein-1 (RIP1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T533 63-65 PRP denotes we
T532 61-62 , denotes ,
T531 57-61 NN denotes work
T530 52-56 DT denotes this
T529 49-51 IN denotes In
T528 47-48 . denotes .
T527 46-47 -RRB- denotes )
T526 42-46 NNP denotes SIRS
T525 41-42 -LRB- denotes (
T524 32-40 NN denotes syndrome
T523 23-31 NN denotes response
T522 10-22 JJ denotes inflammatory
T521 1-9 JJ denotes systemic
T556 213-221 NN denotes activity
T555 206-212 NN denotes kinase
T554 202-205 NNP denotes Akt
T553 197-201 IN denotes that
T552 192-196 VBP denotes show
T551 189-191 PRP denotes We
T550 187-188 . denotes .
T549 181-187 NN denotes kinase
T548 179-180 -RRB- denotes )
T547 175-179 CD denotes RIP1
T546 174-175 -LRB- denotes (
T545 164-173 NN denotes protein-1
T544 152-163 VBG denotes interacting
T543 143-151 NN denotes receptor
T542 134-142 NN denotes mediator
T541 122-133 NN denotes necroptosis
T540 118-121 DT denotes the
T539 115-117 IN denotes by
T538 104-114 VBN denotes controlled
T537 93-103 NNS denotes mechanisms
T536 83-92 VBG denotes signaling
T535 79-82 DT denotes the
T534 66-78 VBD denotes investigated
R261 T521 T524 amod systemic,syndrome
R262 T522 T523 amod inflammatory,response
R263 T523 T524 compound response,syndrome
R265 T525 T524 punct (,syndrome
R266 T526 T524 appos SIRS,syndrome
R267 T527 T524 punct ),syndrome
R269 T529 T534 prep In,investigated
R270 T530 T531 det this,work
R271 T531 T529 pobj work,In
R272 T532 T534 punct ",",investigated
R273 T533 T534 nsubj we,investigated
R274 T534 T534 ROOT investigated,investigated
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R277 T537 T534 dobj mechanisms,investigated
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R290 T550 T534 punct .,investigated
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T466 202-212 Protein denotes Akt kinase
T465 104-114 Regulation denotes controlled
T464 104-114 Regulation denotes controlled
T463 175-179 Protein denotes RIP1
T462 134-173 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled

test3

Id Subject Object Predicate Lexical cue
T45 175-179 Protein denotes RIP1
T44 143-173 Protein denotes receptor interacting protein-1
T43 104-114 Regulation denotes controlled
T32 175-179 Protein denotes RIP1
T31 143-173 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1