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PMC:3585731 / 29384-29580 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T13516 169-176 Regulation denotes changes
T13515 152-160 Positive_regulation denotes required
T13514 43-53 Positive_regulation denotes activation
T13513 30-38 Regulation denotes regulate
T13467 109-113 Protein denotes RIP1
T13466 0-4 Protein denotes RIP1
R8896 T13466 T13513 causeOf RIP1,regulate
R8917 T13514 T13513 themeOf activation,regulate
R8918 T13516 T13515 themeOf changes,required

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14358 184-195 NN denotes necroptosis
T14357 177-183 IN denotes during
T14356 169-176 NN denotes changes
T14355 165-168 NN denotes Akt
T14354 161-164 IN denotes for
T14353 152-160 VB denotes required
T14352 145-151 NN denotes inputs
T14351 133-144 JJ denotes independent
T14350 129-132 CD denotes two
T14349 121-128 VB denotes provide
T14348 114-120 NN denotes kinase
T14347 109-113 NN denotes RIP1
T14346 105-108 CC denotes and
T14345 97-104 NN denotes factors
T14344 90-96 NN denotes growth
T14343 85-89 IN denotes that
T14342 74-84 VB denotes suggesting
T14341 72-73 -COMMA- denotes ,
T14340 61-72 NN denotes necroptosis
T14339 54-60 IN denotes during
T14338 43-53 NN denotes activation
T14337 39-42 NN denotes Akt
T14336 30-38 VB denotes regulate
T14335 27-29 TO denotes to
T14334 22-26 JJ denotes able
T14333 16-21 RB denotes still
T14332 12-15 VB denotes was
T14331 5-11 NN denotes kinase
T14330 0-4 NN denotes RIP1
R9313 T14331 T14330 arg1Of kinase,RIP1
R9314 T14331 T14332 arg1Of kinase,was
R9315 T14331 T14334 arg1Of kinase,able
R9316 T14331 T14336 arg1Of kinase,regulate
R9317 T14332 T14333 arg1Of was,still
R9318 T14332 T14341 arg1Of was,","
R9319 T14332 T14342 modOf was,suggesting
R9320 T14334 T14332 arg2Of able,was
R9321 T14336 T14334 arg2Of regulate,able
R9322 T14336 T14335 arg1Of regulate,to
R9323 T14336 T14339 arg1Of regulate,during
R9324 T14338 T14336 arg2Of activation,regulate
R9325 T14338 T14337 arg1Of activation,Akt
R9326 T14340 T14339 arg2Of necroptosis,during
R9327 T14345 T14344 arg1Of factors,growth
R9328 T14345 T14346 arg1Of factors,and
R9329 T14346 T14349 arg1Of and,provide
R9330 T14348 T14346 arg2Of kinase,and
R9331 T14348 T14347 arg1Of kinase,RIP1
R9332 T14349 T14342 arg2Of provide,suggesting
R9333 T14349 T14343 arg1Of provide,that
R9334 T14352 T14349 arg2Of inputs,provide
R9335 T14352 T14350 arg1Of inputs,two
R9336 T14352 T14351 arg1Of inputs,independent
R9337 T14352 T14353 arg2Of inputs,required
R9338 T14353 T14354 arg1Of required,for
R9339 T14356 T14354 arg2Of changes,for
R9340 T14356 T14355 arg1Of changes,Akt
R9341 T14356 T14357 arg1Of changes,during
R9342 T14358 T14357 arg2Of necroptosis,during

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13848 109-113 Protein denotes RIP1
T13847 0-4 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15069 165-168 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T15068 39-42 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T15034 165-168 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15033 39-42 http://www.uniprot.org/uniprot/P31751 denotes Akt
T14999 165-168 http://www.uniprot.org/uniprot/P31749 denotes Akt
T14998 39-42 http://www.uniprot.org/uniprot/P31749 denotes Akt
T15091 109-113 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T15090 0-4 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T13908 90-96 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T13899 184-195 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T13898 61-72 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T13885 184-195 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T13884 61-72 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T13705 0-196 Sentence denotes RIP1 kinase was still able to regulate Akt activation during necroptosis, suggesting that growth factors and RIP1 kinase provide two independent inputs required for Akt changes during necroptosis.
T185 0-196 Sentence denotes RIP1 kinase was still able to regulate Akt activation during necroptosis, suggesting that growth factors and RIP1 kinase provide two independent inputs required for Akt changes during necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T14031 109-113 Protein denotes RIP1
T14030 0-4 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14927 109-113 Protein denotes RIP1
T14926 0-4 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15241 109-113 Protein denotes RIP1
T15240 0-4 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T15114 109-113 Protein denotes RIP1
T15113 0-4 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15758 39-53 Positive_regulation denotes Akt activation
T15746 27-72 Regulation denotes to regulate Akt activation during necroptosis
T15690 0-4 Protein denotes RIP1
T15649 165-168 Protein denotes Akt
T15641 0-11 Protein denotes RIP1 kinase
T15606 39-42 Protein denotes Akt
T15721 109-120 Protein denotes RIP1 kinase
T15710 109-113 Protein denotes RIP1
R10210 T15606 T15758 themeOf Akt,Akt activation
R10243 T15758 T15746 themeOf Akt activation,to regulate Akt activation during necroptosis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16078 195-196 . denotes .
T16077 184-195 NN denotes necroptosis
T16076 177-183 IN denotes during
T16075 169-176 NNS denotes changes
T16074 165-168 NNP denotes Akt
T16073 161-164 IN denotes for
T16072 152-160 VBN denotes required
T16071 145-151 NNS denotes inputs
T16070 133-144 JJ denotes independent
T16069 129-132 CD denotes two
T16068 121-128 VBP denotes provide
T16067 114-120 NN denotes kinase
T16066 109-113 CD denotes RIP1
T16065 105-108 CC denotes and
T16064 97-104 NNS denotes factors
T16063 90-96 NN denotes growth
T16062 85-89 IN denotes that
T16061 74-84 VBG denotes suggesting
T16060 72-73 , denotes ,
T16059 61-72 NN denotes necroptosis
T16058 54-60 IN denotes during
T16057 43-53 NN denotes activation
T16056 39-42 NNP denotes Akt
T16055 30-38 VB denotes regulate
T16054 27-29 TO denotes to
T16053 22-26 JJ denotes able
T16052 16-21 RB denotes still
T16051 12-15 VBD denotes was
T16050 5-11 NN denotes kinase
T16049 0-4 CD denotes RIP1
R10521 T16049 T16050 nummod RIP1,kinase
R10522 T16050 T16051 nsubj kinase,was
R10523 T16051 T16051 ROOT was,was
R10524 T16052 T16051 advmod still,was
R10525 T16053 T16051 acomp able,was
R10526 T16054 T16055 aux to,regulate
R10527 T16055 T16053 xcomp regulate,able
R10528 T16056 T16057 compound Akt,activation
R10529 T16057 T16055 dobj activation,regulate
R10530 T16058 T16055 prep during,regulate
R10531 T16059 T16058 pobj necroptosis,during
R10532 T16060 T16051 punct ",",was
R10533 T16061 T16051 advcl suggesting,was
R10534 T16062 T16068 mark that,provide
R10535 T16063 T16064 compound growth,factors
R10536 T16064 T16068 nsubj factors,provide
R10537 T16065 T16064 cc and,factors
R10538 T16066 T16067 nummod RIP1,kinase
R10539 T16067 T16064 conj kinase,factors
R10540 T16068 T16061 ccomp provide,suggesting
R10541 T16069 T16071 nummod two,inputs
R10542 T16070 T16071 amod independent,inputs
R10543 T16071 T16068 dobj inputs,provide
R10544 T16072 T16071 acl required,inputs
R10545 T16073 T16072 prep for,required
R10546 T16074 T16075 compound Akt,changes
R10547 T16075 T16073 pobj changes,for
R10548 T16076 T16075 prep during,changes
R10549 T16077 T16076 pobj necroptosis,during
R10550 T16078 T16051 punct .,was

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15343 30-38 Regulation denotes regulate
T15342 43-53 Positive_regulation denotes activation
T15341 109-120 Protein denotes RIP1 kinase
T15340 39-42 Protein denotes Akt
T15339 0-11 Protein denotes RIP1 kinase
R10065 T15339 T15343 causeOf RIP1 kinase,regulate
R10066 T15340 T15342 themeOf Akt,activation
R10067 T15342 T15343 themeOf activation,regulate

test3

Id Subject Object Predicate Lexical cue
T13623 152-160 Positive_regulation denotes required
T13622 109-113 Protein denotes RIP1
T13621 43-53 Positive_regulation denotes activation
T13620 30-38 Regulation denotes regulate
T13619 0-4 Protein denotes RIP1
T13565 109-113 Protein denotes RIP1
T13564 0-4 Protein denotes RIP1
R8934 T13621 T13620 themeOf activation,regulate