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PMC:3585731 / 2797-2976 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T799 167-171 Protein denotes RIP1

2_test

Id Subject Object Predicate Lexical cue
23469174-19109899-90505402 24-26 19109899 denotes 10
23469174-21127402-90505403 30-32 21127402 denotes 11
23469174-17560373-90505404 36-38 17560373 denotes 12
23469174-20539307-90505405 42-44 20539307 denotes 13
23469174-15131264-90505406 48-50 15131264 denotes 14

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1372 172-178 NN denotes kinase
T1371 167-171 NN denotes RIP1
T1370 162-166 IN denotes from
T1369 151-161 RB denotes downstream
T1368 145-150 NN denotes cells
T1367 140-144 NN denotes L929
T1366 137-139 IN denotes in
T1365 125-136 NN denotes necroptosis
T1364 118-124 IN denotes during
T1363 113-117 NN denotes role
T1362 103-112 JJ denotes important
T1361 100-102 DT denotes an
T1360 94-99 VB denotes plays
T1359 83-93 NN denotes activation
T1358 76-82 NN denotes kinase
T1357 72-75 NN denotes JNK
T1356 67-71 IN denotes that
T1355 57-66 VB denotes suggested
T1354 52-56 VB denotes have
T1353 50-51 -RRB- denotes ]
T1352 48-50 CD denotes 14
T1351 47-48 -LRB- denotes [
T1350 45-46 -COMMA- denotes ,
T1349 44-45 -RRB- denotes ]
T1348 42-44 CD denotes 13
T1347 41-42 -LRB- denotes [
T1346 39-40 -COMMA- denotes ,
T1345 38-39 -RRB- denotes ]
T1344 36-38 CD denotes 12
T1343 35-36 -LRB- denotes [
T1342 33-34 -COMMA- denotes ,
T1341 32-33 -RRB- denotes ]
T1340 30-32 CD denotes 11
T1339 29-30 -LRB- denotes [
T1338 27-28 -COMMA- denotes ,
T1337 26-27 -RRB- denotes ]
T1336 24-26 CD denotes 10
T1335 23-24 -LRB- denotes [
T1334 15-22 NN denotes studies
T1333 8-14 JJ denotes recent
T1332 0-7 JJ denotes Several
R771 T1334 T1332 arg1Of studies,Several
R772 T1334 T1333 arg1Of studies,recent
R773 T1334 T1335 arg1Of studies,[
R774 T1334 T1338 arg1Of studies,","
R775 T1334 T1339 arg1Of studies,[
R776 T1334 T1342 arg1Of studies,","
R777 T1334 T1343 arg1Of studies,[
R778 T1334 T1346 arg1Of studies,","
R779 T1334 T1347 arg1Of studies,[
R780 T1334 T1350 arg1Of studies,","
R781 T1334 T1351 arg1Of studies,[
R782 T1334 T1354 arg1Of studies,have
R783 T1334 T1355 arg1Of studies,suggested
R784 T1336 T1335 arg2Of 10,[
R785 T1337 T1335 arg3Of ],[
R786 T1340 T1339 arg2Of 11,[
R787 T1341 T1339 arg3Of ],[
R788 T1344 T1343 arg2Of 12,[
R789 T1345 T1343 arg3Of ],[
R790 T1348 T1347 arg2Of 13,[
R791 T1349 T1347 arg3Of ],[
R792 T1352 T1351 arg2Of 14,[
R793 T1353 T1351 arg3Of ],[
R794 T1355 T1354 arg2Of suggested,have
R795 T1359 T1357 arg1Of activation,JNK
R796 T1359 T1358 arg1Of activation,kinase
R797 T1359 T1360 arg1Of activation,plays
R798 T1360 T1355 arg2Of plays,suggested
R799 T1360 T1356 arg1Of plays,that
R800 T1360 T1364 arg1Of plays,during
R801 T1363 T1360 arg2Of role,plays
R802 T1363 T1361 arg1Of role,an
R803 T1363 T1362 arg1Of role,important
R804 T1365 T1364 arg2Of necroptosis,during
R805 T1365 T1366 arg1Of necroptosis,in
R806 T1365 T1370 arg1Of necroptosis,from
R807 T1368 T1366 arg2Of cells,in
R808 T1368 T1367 arg1Of cells,L929
R809 T1368 T1369 arg1Of cells,downstream
R810 T1372 T1370 arg2Of kinase,from
R811 T1372 T1371 arg1Of kinase,RIP1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T936 167-171 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1799 167-171 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T1036 76-93 http://purl.obolibrary.org/obo/GO_0033674 denotes kinase activation
T1030 72-75 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T977 125-136 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T958 125-136 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T1049 72-75 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T888 0-179 Sentence denotes Several recent studies [10], [11], [12], [13], [14] have suggested that JNK kinase activation plays an important role during necroptosis in L929 cells downstream from RIP1 kinase.
T22 0-179 Sentence denotes Several recent studies [10], [11], [12], [13], [14] have suggested that JNK kinase activation plays an important role during necroptosis in L929 cells downstream from RIP1 kinase.

simple1

Id Subject Object Predicate Lexical cue
T1070 167-171 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1754 167-171 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2126 167-171 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T1873 167-171 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2799 72-93 Positive_regulation denotes JNK kinase activation
T2785 72-82 Protein denotes JNK kinase
T2760 167-178 Protein denotes RIP1 kinase
T2739 72-75 Protein denotes JNK
T2730 167-171 Protein denotes RIP1
R1983 T2785 T2799 themeOf JNK kinase,JNK kinase activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2282 178-179 . denotes .
T2281 172-178 NN denotes kinase
T2280 167-171 CD denotes RIP1
T2279 162-166 IN denotes from
T2278 151-161 JJ denotes downstream
T2277 145-150 NNS denotes cells
T2276 140-144 CD denotes L929
T2275 137-139 IN denotes in
T2274 125-136 NN denotes necroptosis
T2273 118-124 IN denotes during
T2272 113-117 NN denotes role
T2271 103-112 JJ denotes important
T2270 100-102 DT denotes an
T2269 94-99 VBZ denotes plays
T2268 83-93 NN denotes activation
T2267 76-82 NN denotes kinase
T2266 72-75 NNP denotes JNK
T2265 67-71 IN denotes that
T2264 57-66 VBN denotes suggested
T2263 52-56 VBP denotes have
T2262 50-51 NNP denotes ]
T2261 48-50 CD denotes 14
T2260 47-48 NNP denotes [
T2259 45-46 , denotes ,
T2258 44-45 NNP denotes ]
T2257 42-44 CD denotes 13
T2256 41-42 NNP denotes [
T2255 39-40 , denotes ,
T2254 38-39 NNP denotes ]
T2253 36-38 CD denotes 12
T2252 35-36 NNP denotes [
T2251 33-34 , denotes ,
T2250 32-33 NNP denotes ]
T2249 30-32 CD denotes 11
T2248 29-30 NNP denotes [
T2247 27-28 , denotes ,
T2246 26-27 NNP denotes ]
T2245 24-26 CD denotes 10
T2244 23-24 NNP denotes [
T2243 15-22 NNS denotes studies
T2242 8-14 JJ denotes recent
T2241 0-7 JJ denotes Several
R1532 T2241 T2243 amod Several,studies
R1534 T2242 T2243 amod recent,studies
R1535 T2243 T2246 nsubj studies,]
R1536 T2244 T2246 nmod [,]
R1538 T2245 T2246 nummod 10,]
R1539 T2246 T2264 nsubj ],suggested
R1540 T2247 T2246 punct ",",]
R1541 T2248 T2250 compound [,]
R1543 T2249 T2250 compound 11,]
R1544 T2250 T2246 conj ],]
R1545 T2251 T2250 punct ",",]
R1547 T2252 T2254 nmod [,]
R1548 T2253 T2254 nummod 12,]
R1549 T2254 T2250 conj ],]
R1551 T2255 T2254 punct ",",]
R1552 T2256 T2258 nmod [,]
R1553 T2257 T2258 nummod 13,]
R1555 T2258 T2254 conj ],]
R1556 T2259 T2258 punct ",",]
R1557 T2260 T2258 conj [,]
R1558 T2261 T2262 nummod 14,]
R1559 T2262 T2258 conj ],]
R1560 T2263 T2264 aux have,suggested
R1562 T2264 T2264 ROOT suggested,suggested
R1563 T2265 T2269 mark that,plays
R1564 T2266 T2268 compound JNK,activation
R1566 T2267 T2268 compound kinase,activation
R1567 T2268 T2269 nsubj activation,plays
R1568 T2269 T2264 ccomp plays,suggested
R1570 T2270 T2272 det an,role
R1571 T2271 T2272 amod important,role
R1573 T2272 T2269 dobj role,plays
R1574 T2273 T2272 prep during,role
R1575 T2274 T2273 pobj necroptosis,during
R1577 T2275 T2274 prep in,necroptosis
R1578 T2276 T2277 nummod L929,cells
R1579 T2277 T2275 pobj cells,in
R1581 T2278 T2272 amod downstream,role
R1582 T2279 T2269 prep from,plays
R1583 T2280 T2281 nummod RIP1,kinase
R1585 T2281 T2279 pobj kinase,from
R1586 T2282 T2264 punct .,suggested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2163 83-93 Positive_regulation denotes activation
T2162 167-178 Protein denotes RIP1 kinase
T2161 72-82 Protein denotes JNK kinase
R1454 T2161 T2163 themeOf JNK kinase,activation

test3

Id Subject Object Predicate Lexical cue
T830 167-171 Protein denotes RIP1
T849 167-171 Protein denotes RIP1