> top > docs > PMC:3585731 > spans > 27827-28073 > annotations

PMC:3585731 / 27827-28073 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T13499 216-226 Positive_regulation denotes activation
T13498 26-36 Gene_expression denotes expressing
T13457 197-201 Protein denotes RIP1
T13456 121-126 Protein denotes K179M
T13455 75-82 Protein denotes Myr-Akt
T13454 69-73 Protein denotes Akt1
R8889 T13454 T13498 themeOf Akt1,expressing
R8890 T13455 T13454 equivalentTo Myr-Akt,Akt1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14110 234-245 NN denotes necroptosis
T14109 227-233 IN denotes during
T14108 216-226 NN denotes activation
T14107 212-215 NN denotes Akt
T14106 209-211 TO denotes to
T14105 202-208 NN denotes kinase
T14104 197-201 NN denotes RIP1
T14103 193-196 CC denotes and
T14102 185-192 NN denotes factors
T14101 178-184 NN denotes growth
T14100 175-177 IN denotes of
T14099 162-174 NN denotes contribution
T14098 158-161 DT denotes the
T14097 147-157 VB denotes understand
T14096 139-146 RB denotes further
T14095 136-138 TO denotes to
T14094 130-135 NN denotes order
T14093 127-129 IN denotes in
T14092 121-126 NN denotes K179M
T14091 114-120 JJ denotes mutant
T14090 105-113 JJ denotes inactive
T14089 91-104 RB denotes catalytically
T14088 87-90 DT denotes the
T14087 84-86 CC denotes or
T14086 82-83 -RRB- denotes )
T14085 75-82 NN denotes Myr-Akt
T14084 74-75 -LRB- denotes (
T14083 69-73 NN denotes Akt1
T14082 64-68 NN denotes type
T14081 59-63 JJ denotes wild
T14080 52-58 JJ denotes active
T14079 37-51 RB denotes constitutively
T14078 26-36 VB denotes expressing
T14077 19-25 RB denotes stably
T14076 13-18 NN denotes cells
T14075 8-12 NN denotes L929
T14074 3-7 VB denotes used
T14073 0-2 PRP denotes We
R9053 T14073 T14074 arg1Of We,used
R9054 T14076 T14074 arg2Of cells,used
R9055 T14076 T14075 arg1Of cells,L929
R9056 T14076 T14078 arg1Of cells,expressing
R9057 T14076 T14097 arg1Of cells,understand
R9058 T14078 T14077 arg1Of expressing,stably
R9059 T14078 T14093 arg1Of expressing,in
R9060 T14080 T14079 arg1Of active,constitutively
R9061 T14083 T14080 arg1Of Akt1,active
R9062 T14083 T14081 arg1Of Akt1,wild
R9063 T14083 T14082 arg1Of Akt1,type
R9064 T14083 T14084 arg1Of Akt1,(
R9065 T14083 T14087 arg1Of Akt1,or
R9066 T14085 T14084 arg2Of Myr-Akt,(
R9067 T14086 T14084 arg3Of ),(
R9068 T14087 T14078 arg2Of or,expressing
R9069 T14092 T14087 arg2Of K179M,or
R9070 T14092 T14088 arg1Of K179M,the
R9071 T14092 T14089 arg1Of K179M,catalytically
R9072 T14092 T14090 arg1Of K179M,inactive
R9073 T14092 T14091 arg1Of K179M,mutant
R9074 T14094 T14093 arg2Of order,in
R9075 T14097 T14093 arg3Of understand,in
R9076 T14097 T14095 arg1Of understand,to
R9077 T14097 T14096 arg1Of understand,further
R9078 T14099 T14097 arg2Of contribution,understand
R9079 T14099 T14098 arg1Of contribution,the
R9080 T14099 T14100 arg1Of contribution,of
R9081 T14099 T14106 arg1Of contribution,to
R9082 T14102 T14101 arg1Of factors,growth
R9083 T14102 T14103 arg1Of factors,and
R9084 T14103 T14100 arg2Of and,of
R9085 T14105 T14103 arg2Of kinase,and
R9086 T14105 T14104 arg1Of kinase,RIP1
R9087 T14108 T14106 arg2Of activation,to
R9088 T14108 T14107 arg1Of activation,Akt
R9089 T14108 T14109 arg1Of activation,during
R9090 T14110 T14109 arg2Of necroptosis,during

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13838 197-201 Protein denotes RIP1
T13837 121-126 Protein denotes K179M
T13836 75-82 Protein denotes Myr-Akt
T13835 69-73 Protein denotes Akt1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15055 79-82 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T15021 212-215 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15020 79-82 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15089 197-201 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T14986 212-215 http://www.uniprot.org/uniprot/P31749 denotes Akt
T14985 79-82 http://www.uniprot.org/uniprot/P31749 denotes Akt
T15056 212-215 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T13906 178-184 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T13893 234-245 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T13879 234-245 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T13964 13-18 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T13697 0-246 Sentence denotes We used L929 cells stably expressing constitutively active wild type Akt1 (Myr-Akt) or the catalytically inactive mutant K179M in order to further understand the contribution of growth factors and RIP1 kinase to Akt activation during necroptosis.
T177 0-246 Sentence denotes We used L929 cells stably expressing constitutively active wild type Akt1 (Myr-Akt) or the catalytically inactive mutant K179M in order to further understand the contribution of growth factors and RIP1 kinase to Akt activation during necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T14021 197-201 Protein denotes RIP1
T14020 121-126 Protein denotes K179M
T14019 75-82 Protein denotes Myr-Akt
T14018 69-73 Protein denotes Akt1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14957 26-36 Gene_expression denotes expressing
T14917 197-201 Protein denotes RIP1
T14916 121-126 Protein denotes K179M
T14915 75-82 Protein denotes Myr-Akt
T14914 69-73 Protein denotes Akt1
R9911 T14914 T14957 themeOf Akt1,expressing
R9912 T14915 T14957 themeOf Myr-Akt,expressing
R9913 T14916 T14957 themeOf K179M,expressing

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15231 197-201 Protein denotes RIP1
T15230 121-126 Protein denotes K179M
T15229 75-82 Protein denotes Myr-Akt
T15228 69-73 Protein denotes Akt1
T15271 26-36 Gene_expression denotes expressing
R10009 T15228 T15271 themeOf Akt1,expressing
R10010 T15229 T15271 themeOf Myr-Akt,expressing
R10011 T15230 T15271 themeOf K179M,expressing

DLUT931

Id Subject Object Predicate Lexical cue
T15144 26-36 Gene_expression denotes expressing
T15104 197-201 Protein denotes RIP1
T15103 121-126 Protein denotes K179M
T15102 75-82 Protein denotes Myr-Akt
T15101 69-73 Protein denotes Akt1
R9949 T15101 T15144 themeOf Akt1,expressing
R9950 T15102 T15144 themeOf Myr-Akt,expressing
R9951 T15103 T15144 themeOf K179M,expressing

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15757 212-226 Positive_regulation denotes Akt activation
T15702 212-215 Protein denotes Akt
T15681 52-83 Protein denotes active wild type Akt1 (Myr-Akt)
T15653 105-126 Protein denotes inactive mutant K179M
T15637 197-208 Protein denotes RIP1 kinase
T15633 75-82 Protein denotes Myr-Akt
T15624 197-201 Protein denotes RIP1
R10233 T15702 T15757 themeOf Akt,Akt activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15822 245-246 . denotes .
T15821 234-245 NN denotes necroptosis
T15820 227-233 IN denotes during
T15819 216-226 NN denotes activation
T15818 212-215 NNP denotes Akt
T15817 209-211 TO denotes to
T15816 202-208 NN denotes kinase
T15815 197-201 CD denotes RIP1
T15814 193-196 CC denotes and
T15813 185-192 NNS denotes factors
T15812 178-184 NN denotes growth
T15811 175-177 IN denotes of
T15810 162-174 NN denotes contribution
T15809 158-161 DT denotes the
T15808 147-157 VBP denotes understand
T15807 139-146 JJ denotes further
T15806 136-138 TO denotes to
T15805 130-135 NN denotes order
T15804 127-129 IN denotes in
T15803 121-126 NNP denotes K179M
T15802 114-120 JJ denotes mutant
T15801 105-113 JJ denotes inactive
T15800 91-104 RB denotes catalytically
T15799 87-90 DT denotes the
T15798 84-86 CC denotes or
T15797 82-83 -RRB- denotes )
T15796 75-82 NNP denotes Myr-Akt
T15795 74-75 -LRB- denotes (
T15794 69-73 NNP denotes Akt1
T15793 64-68 NN denotes type
T15792 59-63 JJ denotes wild
T15791 52-58 JJ denotes active
T15790 37-51 RB denotes constitutively
T15789 26-36 VBG denotes expressing
T15788 19-25 RB denotes stably
T15787 13-18 NNS denotes cells
T15786 8-12 CD denotes L929
T15785 3-7 VBD denotes used
T15784 0-2 PRP denotes We
R10256 T15784 T15785 nsubj We,used
R10257 T15785 T15785 ROOT used,used
R10258 T15786 T15787 nummod L929,cells
R10259 T15787 T15785 dobj cells,used
R10260 T15788 T15789 advmod stably,expressing
R10261 T15789 T15785 advcl expressing,used
R10262 T15790 T15791 advmod constitutively,active
R10263 T15791 T15793 amod active,type
R10264 T15792 T15793 amod wild,type
R10265 T15793 T15789 dobj type,expressing
R10266 T15794 T15793 appos Akt1,type
R10267 T15795 T15796 punct (,Myr-Akt
R10268 T15796 T15794 appos Myr-Akt,Akt1
R10269 T15797 T15796 punct ),Myr-Akt
R10270 T15798 T15794 cc or,Akt1
R10271 T15799 T15803 det the,K179M
R10272 T15800 T15801 advmod catalytically,inactive
R10273 T15801 T15803 amod inactive,K179M
R10274 T15802 T15803 compound mutant,K179M
R10275 T15803 T15794 conj K179M,Akt1
R10276 T15804 T15789 prep in,expressing
R10277 T15805 T15804 pobj order,in
R10278 T15806 T15808 aux to,understand
R10279 T15807 T15808 advmod further,understand
R10280 T15808 T15805 acl understand,order
R10281 T15809 T15810 det the,contribution
R10282 T15810 T15808 dobj contribution,understand
R10283 T15811 T15810 prep of,contribution
R10284 T15812 T15813 compound growth,factors
R10285 T15813 T15811 pobj factors,of
R10286 T15814 T15813 cc and,factors
R10287 T15815 T15816 nummod RIP1,kinase
R10288 T15816 T15813 conj kinase,factors
R10289 T15817 T15816 prep to,kinase
R10290 T15818 T15819 compound Akt,activation
R10291 T15819 T15817 pobj activation,to
R10292 T15820 T15816 prep during,kinase
R10293 T15821 T15820 pobj necroptosis,during
R10294 T15822 T15785 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15305 162-174 Positive_regulation denotes contribution
T15304 216-226 Positive_regulation denotes activation
T15303 52-58 Positive_regulation denotes active
T15302 52-58 Positive_regulation denotes active
T15301 26-36 Gene_expression denotes expressing
T15300 26-36 Gene_expression denotes expressing
T15299 26-36 Gene_expression denotes expressing
T15298 212-215 Protein denotes Akt
T15297 197-208 Protein denotes RIP1 kinase
T15296 79-82 Protein denotes Akt
T15295 75-78 Protein denotes Myr
T15294 59-73 Protein denotes wild type Akt1
R10042 T15294 T15299 themeOf wild type Akt1,expressing
R10043 T15294 T15302 themeOf wild type Akt1,active
R10044 T15295 T15300 themeOf Myr,expressing
R10045 T15296 T15301 themeOf Akt,expressing
R10046 T15296 T15303 themeOf Akt,active
R10047 T15298 T15304 themeOf Akt,activation
R10048 T15304 T15305 themeOf activation,contribution

test3

Id Subject Object Predicate Lexical cue
T13602 216-226 Positive_regulation denotes activation
T13601 197-201 Protein denotes RIP1
T13600 121-126 Protein denotes K179M
T13599 75-82 Protein denotes Myr-Akt
T13598 69-73 Protein denotes Akt1
T13597 26-36 Gene_expression denotes expressing
T13555 197-201 Protein denotes RIP1
T13554 121-126 Protein denotes K179M
T13553 75-82 Protein denotes Myr-Akt
T13552 69-73 Protein denotes Akt1
R8927 T13598 T13597 themeOf Akt1,expressing
R8928 T13599 T13598 equivalentTo Myr-Akt,Akt1