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PMC:3585731 / 276-531 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T14 199-203 Protein denotes RIP1
T13 167-197 Protein denotes receptor interacting protein-1
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T221 246-248 VB denotes is
T220 237-245 NN denotes activity
T219 230-236 NN denotes kinase
T218 226-229 NN denotes Akt
T217 221-225 IN denotes that
T216 216-220 VB denotes show
T215 213-215 PRP denotes We
T214 205-211 NN denotes kinase
T213 203-204 -RRB- denotes )
T212 199-203 NN denotes RIP1
T211 198-199 -LRB- denotes (
T210 188-197 NN denotes protein-1
T209 176-187 NN denotes interacting
T208 167-175 NN denotes receptor
T207 158-166 NN denotes mediator
T206 146-157 NN denotes necroptosis
T205 142-145 DT denotes the
T204 139-141 IN denotes by
T203 128-138 VB denotes controlled
T202 117-127 NN denotes mechanisms
T201 107-116 NN denotes signaling
T200 103-106 DT denotes the
T199 90-102 VB denotes investigated
T198 87-89 PRP denotes we
T197 85-86 -COMMA- denotes ,
T196 81-85 NN denotes work
T195 76-80 DT denotes this
T194 73-75 IN denotes In
T193 70-71 -RRB- denotes )
T192 66-70 NN denotes SIRS
T191 65-66 -LRB- denotes (
T190 56-64 NN denotes syndrome
T189 47-55 NN denotes response
T188 34-46 JJ denotes inflammatory
T187 25-33 JJ denotes systemic
T186 21-24 CC denotes and
T185 8-20 NN denotes inflammation
R47 T185 T186 arg1Of inflammation,and
R49 T190 T186 arg2Of syndrome,and
R50 T190 T187 arg1Of syndrome,systemic
R51 T190 T188 arg1Of syndrome,inflammatory
R52 T190 T189 arg1Of syndrome,response
R53 T190 T191 arg1Of syndrome,(
R54 T192 T191 arg2Of SIRS,(
R55 T193 T191 arg3Of ),(
R56 T196 T194 arg2Of work,In
R57 T196 T195 arg1Of work,this
R58 T198 T199 arg1Of we,investigated
R59 T199 T194 arg1Of investigated,In
R60 T199 T197 arg1Of investigated,","
R61 T202 T199 arg2Of mechanisms,investigated
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 167-197 Protein denotes receptor interacting protein-1
T91 199-203 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 199-203 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T395 226-229 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T388 226-229 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 226-229 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 230-245 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T127 107-116 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T126 34-55 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T125 8-20 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T109 146-157 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T101 146-157 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 230-245 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T62 73-212 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T5 73-212 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.

simple1

Id Subject Object Predicate Lexical cue
T145 167-197 Protein denotes receptor interacting protein-1
T146 199-203 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 167-197 Protein denotes receptor interacting protein-1
T356 199-203 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 167-197 Protein denotes receptor interacting protein-1
T444 199-203 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T412 167-197 Protein denotes receptor interacting protein-1
T413 199-203 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T748 139-211 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 199-203 Protein denotes RIP1
T743 226-229 Protein denotes Akt
T742 226-236 Protein denotes Akt kinase
T736 167-204 Protein denotes receptor interacting protein-1 (RIP1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T533 87-89 PRP denotes we
T532 85-86 , denotes ,
T531 81-85 NN denotes work
T530 76-80 DT denotes this
T529 73-75 IN denotes In
T528 71-72 . denotes .
T527 70-71 -RRB- denotes )
T526 66-70 NNP denotes SIRS
T525 65-66 -LRB- denotes (
T524 56-64 NN denotes syndrome
T523 47-55 NN denotes response
T522 34-46 JJ denotes inflammatory
T521 25-33 JJ denotes systemic
T520 21-24 CC denotes and
T519 8-20 NN denotes inflammation
T557 246-248 VBZ denotes is
T556 237-245 NN denotes activity
T555 230-236 NN denotes kinase
T554 226-229 NNP denotes Akt
T553 221-225 IN denotes that
T552 216-220 VBP denotes show
T551 213-215 PRP denotes We
T550 211-212 . denotes .
T549 205-211 NN denotes kinase
T548 203-204 -RRB- denotes )
T547 199-203 CD denotes RIP1
T546 198-199 -LRB- denotes (
T545 188-197 NN denotes protein-1
T544 176-187 VBG denotes interacting
T543 167-175 NN denotes receptor
T542 158-166 NN denotes mediator
T541 146-157 NN denotes necroptosis
T540 142-145 DT denotes the
T539 139-141 IN denotes by
T538 128-138 VBN denotes controlled
T537 117-127 NNS denotes mechanisms
T536 107-116 VBG denotes signaling
T535 103-106 DT denotes the
T534 90-102 VBD denotes investigated
R260 T520 T519 cc and,inflammation
R261 T521 T524 amod systemic,syndrome
R262 T522 T523 amod inflammatory,response
R263 T523 T524 compound response,syndrome
R264 T524 T519 conj syndrome,inflammation
R265 T525 T524 punct (,syndrome
R266 T526 T524 appos SIRS,syndrome
R267 T527 T524 punct ),syndrome
R269 T529 T534 prep In,investigated
R270 T530 T531 det this,work
R271 T531 T529 pobj work,In
R272 T532 T534 punct ",",investigated
R273 T533 T534 nsubj we,investigated
R274 T534 T534 ROOT investigated,investigated
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R277 T537 T534 dobj mechanisms,investigated
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R290 T550 T534 punct .,investigated
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T466 226-236 Protein denotes Akt kinase
T465 128-138 Regulation denotes controlled
T464 128-138 Regulation denotes controlled
T463 199-203 Protein denotes RIP1
T462 158-197 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled

test3

Id Subject Object Predicate Lexical cue
T45 199-203 Protein denotes RIP1
T44 167-197 Protein denotes receptor interacting protein-1
T43 128-138 Regulation denotes controlled
T32 199-203 Protein denotes RIP1
T31 167-197 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1