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PMC:3585731 / 27517-27736 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T12716 189-199 Positive_regulation denotes activation
T12715 158-166 Positive_regulation denotes required
T12714 86-101 Phosphorylation denotes phosphorylation
T12713 65-74 Negative_regulation denotes inhibited
T12712 16-25 Negative_regulation denotes knockdown
T12696 135-139 Protein denotes PDK1
T12695 29-33 Protein denotes PDK1
R8395 T12695 T12712 themeOf PDK1,knockdown
R8396 T12696 T12715 causeOf PDK1,required
R8403 T12712 T12713 causeOf knockdown,inhibited
R8404 T12714 T12713 themeOf phosphorylation,inhibited
R8405 T12716 T12715 themeOf activation,required

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13002 207-218 NN denotes necroptosis
T13001 200-206 IN denotes during
T13000 189-199 NN denotes activation
T12999 185-188 NN denotes Akt
T12998 171-184 JJ denotes non-canonical
T12997 167-170 IN denotes for
T12996 158-166 VB denotes required
T12995 152-157 RB denotes still
T12994 149-151 VB denotes is
T12993 140-148 NN denotes activity
T12992 135-139 NN denotes PDK1
T12991 131-134 CC denotes and
T12990 126-130 NN denotes PI3K
T12989 124-125 -COMMA- denotes ,
T12988 115-124 RB denotes Therefore
T12987 113-114 -RRB- denotes )
T12986 112-113 NN denotes F
T12985 111-112 -COMMA- denotes ,
T12984 108-111 NN denotes S7E
T12983 103-107 NNP denotes Fig.
T12982 102-103 -LRB- denotes (
T12981 86-101 NN denotes phosphorylation
T12980 79-85 NN denotes Thr308
T12979 75-78 NN denotes Akt
T12978 65-74 VB denotes inhibited
T12977 61-64 CC denotes and
T12976 55-60 NN denotes death
T12975 50-54 IN denotes from
T12974 44-49 NN denotes cells
T12973 34-43 VB denotes protected
T12972 29-33 NN denotes PDK1
T12971 26-28 IN denotes of
T12970 16-25 NN denotes knockdown
T12969 10-15 NN denotes siRNA
T12968 8-9 -COMMA- denotes ,
T12967 0-8 RB denotes Likewise
R8560 T12970 T12969 arg1Of knockdown,siRNA
R8561 T12970 T12971 arg1Of knockdown,of
R8562 T12970 T12973 arg1Of knockdown,protected
R8563 T12970 T12978 arg1Of knockdown,inhibited
R8564 T12972 T12971 arg2Of PDK1,of
R8565 T12973 T12975 arg1Of protected,from
R8566 T12973 T12977 arg1Of protected,and
R8567 T12974 T12973 arg2Of cells,protected
R8568 T12976 T12975 arg2Of death,from
R8569 T12977 T12989 arg1Of and,","
R8570 T12978 T12977 arg2Of inhibited,and
R8571 T12978 T12988 arg1Of inhibited,Therefore
R8572 T12981 T12978 arg2Of phosphorylation,inhibited
R8573 T12981 T12979 arg1Of phosphorylation,Akt
R8574 T12981 T12980 arg1Of phosphorylation,Thr308
R8575 T12981 T12982 arg1Of phosphorylation,(
R8576 T12984 T12982 arg2Of S7E,(
R8577 T12984 T12983 arg1Of S7E,Fig.
R8578 T12984 T12985 arg1Of S7E,","
R8579 T12986 T12985 arg2Of F,","
R8580 T12987 T12982 arg3Of ),(
R8581 T12989 T12967 arg1Of ",",Likewise
R8582 T12989 T12968 arg1Of ",",","
R8583 T12990 T12991 arg1Of PI3K,and
R8584 T12991 T12994 arg1Of and,is
R8585 T12991 T12996 arg2Of and,required
R8586 T12993 T12991 arg2Of activity,and
R8587 T12993 T12992 arg1Of activity,PDK1
R8588 T12996 T12989 arg2Of required,","
R8589 T12996 T12994 arg2Of required,is
R8590 T12996 T12995 arg1Of required,still
R8591 T12996 T12997 arg1Of required,for
R8592 T13000 T12997 arg2Of activation,for
R8593 T13000 T12998 arg1Of activation,non-canonical
R8594 T13000 T12999 arg1Of activation,Akt
R8595 T13000 T13001 arg1Of activation,during
R8596 T13002 T13001 arg2Of necroptosis,during

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12768 135-139 Protein denotes PDK1
T12767 29-33 Protein denotes PDK1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13216 75-78 http://www.uniprot.org/uniprot/P31751 denotes Akt
T13209 185-188 http://www.uniprot.org/uniprot/P31749 denotes Akt
T13208 75-78 http://www.uniprot.org/uniprot/P31749 denotes Akt
T13225 185-188 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T13224 75-78 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T13217 185-188 http://www.uniprot.org/uniprot/P31751 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T12794 55-60 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T12788 207-218 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T12786 207-218 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T12784 126-130 http://purl.obolibrary.org/obo/GO_0016303 denotes PI3K
T12778 86-101 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T12774 135-139 http://purl.obolibrary.org/obo/GO_0004740 denotes PDK1
T12773 29-33 http://purl.obolibrary.org/obo/GO_0004740 denotes PDK1

GO-MF

Id Subject Object Predicate Lexical cue
T12805 126-130 http://purl.obolibrary.org/obo/GO_0016303 denotes PI3K
T12800 135-139 http://purl.obolibrary.org/obo/GO_0004740 denotes PDK1
T12799 29-33 http://purl.obolibrary.org/obo/GO_0004740 denotes PDK1

GO-CC

Id Subject Object Predicate Lexical cue
T12811 44-49 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T12752 0-219 Sentence denotes Likewise, siRNA knockdown of PDK1 protected cells from death and inhibited Akt Thr308 phosphorylation (Fig. S7E,F) Therefore, PI3K and PDK1 activity is still required for non-canonical Akt activation during necroptosis.
T175 0-219 Sentence denotes Likewise, siRNA knockdown of PDK1 protected cells from death and inhibited Akt Thr308 phosphorylation (Fig. S7E,F) Therefore, PI3K and PDK1 activity is still required for non-canonical Akt activation during necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T12825 135-139 Protein denotes PDK1
T12824 29-33 Protein denotes PDK1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T13168 16-25 Negative_regulation denotes knockdown
T13167 158-166 Positive_regulation denotes required
T13164 135-139 Protein denotes PDK1
T13163 29-33 Protein denotes PDK1
R8754 T13163 T13168 themeOf PDK1,knockdown
R8755 T13164 T13167 themeOf PDK1,required

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13264 16-25 Negative_regulation denotes knockdown
T13260 135-139 Protein denotes PDK1
T13259 29-33 Protein denotes PDK1
R8805 T13259 T13264 themeOf PDK1,knockdown

DLUT931

Id Subject Object Predicate Lexical cue
T13237 158-166 Positive_regulation denotes required
T13236 16-25 Negative_regulation denotes knockdown
T13232 135-139 Protein denotes PDK1
T13231 29-33 Protein denotes PDK1
R8792 T13231 T13236 themeOf PDK1,knockdown
R8793 T13232 T13237 themeOf PDK1,required

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T13401 171-218 Positive_regulation denotes non-canonical Akt activation during necroptosis
T13395 65-101 Phosphorylation denotes inhibited Akt Thr308 phosphorylation
T13394 65-101 Negative_regulation denotes inhibited Akt Thr308 phosphorylation
T13390 75-85 Entity denotes Akt Thr308
T13389 10-12 Entity denotes si
T13387 135-139 Protein denotes PDK1
T13380 29-33 Protein denotes PDK1
T13375 103-106 Protein denotes Fig
T13374 75-78 Protein denotes Akt
T13363 26-101 Entity denotes of PDK1 protected cells from death and inhibited Akt Thr308 phosphorylation
T13360 185-188 Protein denotes Akt
T13359 12-15 Protein denotes RNA
R8868 T13360 T13401 themeOf Akt,non-canonical Akt activation during necroptosis
R8874 T13374 T13395 themeOf Akt,inhibited Akt Thr308 phosphorylation
R8882 T13390 T13374 partOf Akt Thr308,Akt
R8883 T13390 T13395 siteOf Akt Thr308,inhibited Akt Thr308 phosphorylation
R8888 T13395 T13394 themeOf inhibited Akt Thr308 phosphorylation,inhibited Akt Thr308 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13201 218-219 . denotes .
T13200 207-218 NN denotes necroptosis
T13199 200-206 IN denotes during
T13198 189-199 NN denotes activation
T13197 185-188 NNP denotes Akt
T13196 171-184 JJ denotes non-canonical
T13195 167-170 IN denotes for
T13194 158-166 VBN denotes required
T13193 152-157 RB denotes still
T13192 149-151 VBZ denotes is
T13191 140-148 NN denotes activity
T13157 26-28 IN denotes of
T13156 16-25 NN denotes knockdown
T13155 10-15 NNP denotes siRNA
T13154 8-9 , denotes ,
T13153 0-8 RB denotes Likewise
T13190 135-139 NNP denotes PDK1
T13189 131-134 CC denotes and
T13188 126-130 NNP denotes PI3K
T13187 124-125 , denotes ,
T13186 115-124 RB denotes Therefore
T13185 113-114 -RRB- denotes )
T13184 112-113 NN denotes F
T13183 111-112 , denotes ,
T13182 108-111 CD denotes S7E
T13181 106-107 . denotes .
T13180 103-106 NNP denotes Fig
T13179 102-103 -LRB- denotes (
T13178 86-101 NN denotes phosphorylation
T13177 79-85 NNP denotes Thr308
T13176 75-78 NNP denotes Akt
T13175 65-74 VBD denotes inhibited
T13174 61-64 CC denotes and
T13173 55-60 NN denotes death
T13172 50-54 IN denotes from
T13171 44-49 NNS denotes cells
T13170 34-43 JJ denotes protected
T13169 29-33 CD denotes PDK1
R8747 T13153 T13175 advmod Likewise,inhibited
R8748 T13154 T13175 punct ",",inhibited
R8749 T13155 T13156 compound siRNA,knockdown
R8750 T13156 T13175 nsubj knockdown,inhibited
R8751 T13157 T13156 prep of,knockdown
R8756 T13169 T13171 nummod PDK1,cells
R8757 T13170 T13171 amod protected,cells
R8758 T13171 T13157 pobj cells,of
R8759 T13172 T13156 prep from,knockdown
R8760 T13173 T13172 pobj death,from
R8761 T13174 T13156 cc and,knockdown
R8762 T13175 T13175 ROOT inhibited,inhibited
R8763 T13176 T13178 compound Akt,phosphorylation
R8764 T13177 T13178 compound Thr308,phosphorylation
R8765 T13178 T13175 dobj phosphorylation,inhibited
R8766 T13179 T13180 punct (,Fig
R8767 T13180 T13178 appos Fig,phosphorylation
R8768 T13181 T13175 punct .,inhibited
R8769 T13182 T13182 ROOT S7E,S7E
R8770 T13183 T13184 punct ",",F
R8771 T13184 T13182 appos F,S7E
R8772 T13185 T13182 punct ),S7E
R8773 T13186 T13194 advmod Therefore,required
R8774 T13187 T13194 punct ",",required
R8775 T13188 T13194 nsubjpass PI3K,required
R8776 T13189 T13188 cc and,PI3K
R8777 T13190 T13191 compound PDK1,activity
R8778 T13191 T13188 conj activity,PI3K
R8779 T13192 T13194 auxpass is,required
R8780 T13193 T13194 advmod still,required
R8781 T13194 T13194 ROOT required,required
R8782 T13195 T13194 prep for,required
R8783 T13196 T13198 amod non-canonical,activation
R8784 T13197 T13198 compound Akt,activation
R8785 T13198 T13195 pobj activation,for
R8786 T13199 T13194 prep during,required
R8787 T13200 T13199 pobj necroptosis,during
R8788 T13201 T13194 punct .,required

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13311 65-74 Negative_regulation denotes inhibited
T13310 158-166 Positive_regulation denotes required
T13309 158-166 Positive_regulation denotes required
T13308 86-101 Phosphorylation denotes phosphorylation
T13307 16-25 Negative_regulation denotes knockdown
T13306 135-139 Protein denotes PDK1
T13305 126-130 Protein denotes PI3K
T13304 75-85 Protein denotes Akt Thr308
T13303 29-33 Protein denotes PDK1
R8829 T13303 T13307 themeOf PDK1,knockdown
R8830 T13304 T13308 themeOf Akt Thr308,phosphorylation
R8831 T13305 T13309 themeOf PI3K,required
R8832 T13306 T13310 themeOf PDK1,required
R8833 T13307 T13309 causeOf knockdown,required
R8834 T13307 T13310 causeOf knockdown,required
R8835 T13307 T13311 causeOf knockdown,inhibited
R8836 T13308 T13311 themeOf phosphorylation,inhibited

test3

Id Subject Object Predicate Lexical cue
T12746 189-199 Positive_regulation denotes activation
T12745 135-139 Protein denotes PDK1
T12744 86-101 Phosphorylation denotes phosphorylation
T12743 65-74 Negative_regulation denotes inhibited
T12742 29-33 Protein denotes PDK1
T12723 135-139 Protein denotes PDK1
T12722 29-33 Protein denotes PDK1
R8416 T12744 T12743 themeOf phosphorylation,inhibited