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PMC:3585731 / 2659-3002 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T799 305-309 Protein denotes RIP1
T798 107-111 Protein denotes RIP3
T797 98-102 Protein denotes RIP1

2_test

Id Subject Object Predicate Lexical cue
23469174-19109899-90505402 162-164 19109899 denotes 10
23469174-21127402-90505403 168-170 21127402 denotes 11
23469174-17560373-90505404 174-176 17560373 denotes 12
23469174-20539307-90505405 180-182 20539307 denotes 13
23469174-15131264-90505406 186-188 15131264 denotes 14

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1376 331-334 DT denotes the
T1375 329-330 -COMMA- denotes ,
T1374 322-329 NN denotes example
T1373 318-321 IN denotes For
T1372 310-316 NN denotes kinase
T1371 305-309 NN denotes RIP1
T1370 300-304 IN denotes from
T1369 289-299 RB denotes downstream
T1368 283-288 NN denotes cells
T1367 278-282 NN denotes L929
T1366 275-277 IN denotes in
T1365 263-274 NN denotes necroptosis
T1364 256-262 IN denotes during
T1363 251-255 NN denotes role
T1362 241-250 JJ denotes important
T1361 238-240 DT denotes an
T1360 232-237 VB denotes plays
T1359 221-231 NN denotes activation
T1358 214-220 NN denotes kinase
T1357 210-213 NN denotes JNK
T1356 205-209 IN denotes that
T1355 195-204 VB denotes suggested
T1354 190-194 VB denotes have
T1353 188-189 -RRB- denotes ]
T1352 186-188 CD denotes 14
T1351 185-186 -LRB- denotes [
T1350 183-184 -COMMA- denotes ,
T1349 182-183 -RRB- denotes ]
T1348 180-182 CD denotes 13
T1347 179-180 -LRB- denotes [
T1346 177-178 -COMMA- denotes ,
T1345 176-177 -RRB- denotes ]
T1344 174-176 CD denotes 12
T1343 173-174 -LRB- denotes [
T1342 171-172 -COMMA- denotes ,
T1341 170-171 -RRB- denotes ]
T1340 168-170 CD denotes 11
T1339 167-168 -LRB- denotes [
T1338 165-166 -COMMA- denotes ,
T1337 164-165 -RRB- denotes ]
T1336 162-164 CD denotes 10
T1335 161-162 -LRB- denotes [
T1334 153-160 NN denotes studies
T1333 146-152 JJ denotes recent
T1332 138-145 JJ denotes Several
T1331 126-136 VB denotes understood
T1330 119-125 RB denotes poorly
T1329 112-118 VB denotes remain
T1328 107-111 NN denotes RIP3
T1327 103-106 CC denotes and
T1326 98-102 NN denotes RIP1
T1325 95-97 TO denotes to
T1324 83-94 NN denotes connections
T1323 77-82 PRP-DOLLAR- denotes their
T1322 73-76 CC denotes and
T1321 61-72 NN denotes necroptosis
T1320 54-60 IN denotes during
T1319 44-53 VB denotes activated
T1318 35-43 NN denotes pathways
T1317 25-34 NN denotes signaling
T1316 16-24 JJ denotes specific
T1315 12-15 DT denotes the
T1314 10-11 -COMMA- denotes ,
T1313 3-10 RB denotes However
R752 T1318 T1315 arg1Of pathways,the
R753 T1318 T1316 arg1Of pathways,specific
R754 T1318 T1317 arg1Of pathways,signaling
R755 T1318 T1319 arg2Of pathways,activated
R756 T1318 T1322 arg1Of pathways,and
R757 T1319 T1320 arg1Of activated,during
R758 T1321 T1320 arg2Of necroptosis,during
R759 T1322 T1329 arg1Of and,remain
R760 T1322 T1331 arg2Of and,understood
R761 T1324 T1322 arg2Of connections,and
R762 T1324 T1323 arg1Of connections,their
R763 T1324 T1325 arg1Of connections,to
R764 T1326 T1327 arg1Of RIP1,and
R765 T1327 T1325 arg2Of and,to
R766 T1328 T1327 arg2Of RIP3,and
R767 T1331 T1313 arg1Of understood,However
R768 T1331 T1314 arg1Of understood,","
R769 T1331 T1329 arg2Of understood,remain
R770 T1331 T1330 arg1Of understood,poorly
R771 T1334 T1332 arg1Of studies,Several
R772 T1334 T1333 arg1Of studies,recent
R773 T1334 T1335 arg1Of studies,[
R774 T1334 T1338 arg1Of studies,","
R775 T1334 T1339 arg1Of studies,[
R776 T1334 T1342 arg1Of studies,","
R777 T1334 T1343 arg1Of studies,[
R778 T1334 T1346 arg1Of studies,","
R779 T1334 T1347 arg1Of studies,[
R780 T1334 T1350 arg1Of studies,","
R781 T1334 T1351 arg1Of studies,[
R782 T1334 T1354 arg1Of studies,have
R783 T1334 T1355 arg1Of studies,suggested
R784 T1336 T1335 arg2Of 10,[
R785 T1337 T1335 arg3Of ],[
R786 T1340 T1339 arg2Of 11,[
R787 T1341 T1339 arg3Of ],[
R788 T1344 T1343 arg2Of 12,[
R789 T1345 T1343 arg3Of ],[
R790 T1348 T1347 arg2Of 13,[
R791 T1349 T1347 arg3Of ],[
R792 T1352 T1351 arg2Of 14,[
R793 T1353 T1351 arg3Of ],[
R794 T1355 T1354 arg2Of suggested,have
R795 T1359 T1357 arg1Of activation,JNK
R796 T1359 T1358 arg1Of activation,kinase
R797 T1359 T1360 arg1Of activation,plays
R798 T1360 T1355 arg2Of plays,suggested
R799 T1360 T1356 arg1Of plays,that
R800 T1360 T1364 arg1Of plays,during
R801 T1363 T1360 arg2Of role,plays
R802 T1363 T1361 arg1Of role,an
R803 T1363 T1362 arg1Of role,important
R804 T1365 T1364 arg2Of necroptosis,during
R805 T1365 T1366 arg1Of necroptosis,in
R806 T1365 T1370 arg1Of necroptosis,from
R807 T1368 T1366 arg2Of cells,in
R808 T1368 T1367 arg1Of cells,L929
R809 T1368 T1369 arg1Of cells,downstream
R810 T1372 T1370 arg2Of kinase,from
R811 T1372 T1371 arg1Of kinase,RIP1
R812 T1374 T1373 arg2Of example,For

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T936 305-309 Protein denotes RIP1
T935 107-111 Protein denotes RIP3
T934 98-102 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1799 305-309 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T1798 98-102 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T1036 214-231 http://purl.obolibrary.org/obo/GO_0033674 denotes kinase activation
T1030 210-213 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T1029 25-53 http://purl.obolibrary.org/obo/GO_1903265 denotes signaling pathways activated
T1028 25-53 http://purl.obolibrary.org/obo/GO_1902843 denotes signaling pathways activated
T1027 25-53 http://purl.obolibrary.org/obo/GO_1902046 denotes signaling pathways activated
T1026 25-53 http://purl.obolibrary.org/obo/GO_1900236 denotes signaling pathways activated
T1025 25-53 http://purl.obolibrary.org/obo/GO_0038084 denotes signaling pathways activated
T1024 25-53 http://purl.obolibrary.org/obo/GO_0009873 denotes signaling pathways activated
T1023 25-53 http://purl.obolibrary.org/obo/GO_1902204 denotes signaling pathways activated
T1022 25-53 http://purl.obolibrary.org/obo/GO_1901186 denotes signaling pathways activated
T1021 25-53 http://purl.obolibrary.org/obo/GO_0033211 denotes signaling pathways activated
T1020 25-53 http://purl.obolibrary.org/obo/GO_0009736 denotes signaling pathways activated
T1019 25-43 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T1015 25-34 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T977 263-274 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T976 61-72 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T958 263-274 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T957 61-72 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T1049 210-213 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T888 138-317 Sentence denotes Several recent studies [10], [11], [12], [13], [14] have suggested that JNK kinase activation plays an important role during necroptosis in L929 cells downstream from RIP1 kinase.
T887 3-137 Sentence denotes However, the specific signaling pathways activated during necroptosis and their connections to RIP1 and RIP3 remain poorly understood.
T21 3-137 Sentence denotes However, the specific signaling pathways activated during necroptosis and their connections to RIP1 and RIP3 remain poorly understood.
T22 138-317 Sentence denotes Several recent studies [10], [11], [12], [13], [14] have suggested that JNK kinase activation plays an important role during necroptosis in L929 cells downstream from RIP1 kinase.

simple1

Id Subject Object Predicate Lexical cue
T1070 305-309 Protein denotes RIP1
T1069 107-111 Protein denotes RIP3
T1068 98-102 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1752 98-102 Protein denotes RIP1
T1753 107-111 Protein denotes RIP3
T1754 305-309 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2126 305-309 Protein denotes RIP1
T2125 107-111 Protein denotes RIP3
T2124 98-102 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T1873 305-309 Protein denotes RIP1
T1872 107-111 Protein denotes RIP3
T1871 98-102 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2799 210-231 Positive_regulation denotes JNK kinase activation
T2785 210-220 Protein denotes JNK kinase
T2775 107-111 Protein denotes RIP3
T2760 305-316 Protein denotes RIP1 kinase
T2740 98-102 Protein denotes RIP1
T2739 210-213 Protein denotes JNK
T2730 305-309 Protein denotes RIP1
R1983 T2785 T2799 themeOf JNK kinase,JNK kinase activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2286 331-334 DT denotes the
T2285 329-330 , denotes ,
T2284 322-329 NN denotes example
T2283 318-321 IN denotes For
T2282 316-317 . denotes .
T2281 310-316 NN denotes kinase
T2280 305-309 CD denotes RIP1
T2279 300-304 IN denotes from
T2278 289-299 JJ denotes downstream
T2277 283-288 NNS denotes cells
T2276 278-282 CD denotes L929
T2275 275-277 IN denotes in
T2274 263-274 NN denotes necroptosis
T2273 256-262 IN denotes during
T2272 251-255 NN denotes role
T2271 241-250 JJ denotes important
T2270 238-240 DT denotes an
T2269 232-237 VBZ denotes plays
T2268 221-231 NN denotes activation
T2267 214-220 NN denotes kinase
T2266 210-213 NNP denotes JNK
T2265 205-209 IN denotes that
T2264 195-204 VBN denotes suggested
T2263 190-194 VBP denotes have
T2262 188-189 NNP denotes ]
T2261 186-188 CD denotes 14
T2260 185-186 NNP denotes [
T2259 183-184 , denotes ,
T2258 182-183 NNP denotes ]
T2257 180-182 CD denotes 13
T2256 179-180 NNP denotes [
T2255 177-178 , denotes ,
T2254 176-177 NNP denotes ]
T2253 174-176 CD denotes 12
T2252 173-174 NNP denotes [
T2251 171-172 , denotes ,
T2250 170-171 NNP denotes ]
T2249 168-170 CD denotes 11
T2248 167-168 NNP denotes [
T2247 165-166 , denotes ,
T2246 164-165 NNP denotes ]
T2245 162-164 CD denotes 10
T2244 161-162 NNP denotes [
T2243 153-160 NNS denotes studies
T2242 146-152 JJ denotes recent
T2241 138-145 JJ denotes Several
T2240 136-137 . denotes .
T2239 126-136 VBN denotes understood
T2238 119-125 RB denotes poorly
T2237 112-118 VBP denotes remain
T2236 107-111 CD denotes RIP3
T2235 103-106 CC denotes and
T2234 98-102 CD denotes RIP1
T2233 95-97 TO denotes to
T2232 83-94 NNS denotes connections
T2231 77-82 PRP$ denotes their
T2230 73-76 CC denotes and
T2229 61-72 NN denotes necroptosis
T2228 54-60 IN denotes during
T2227 44-53 VBN denotes activated
T2226 35-43 NNS denotes pathways
T2225 25-34 VBG denotes signaling
T2224 16-24 JJ denotes specific
T2223 12-15 DT denotes the
T2222 10-11 , denotes ,
T2221 3-10 RB denotes However
T2220 1-2 . denotes .
R1505 T2221 T2237 advmod However,remain
R1506 T2222 T2237 punct ",",remain
R1507 T2223 T2226 det the,pathways
R1509 T2224 T2226 amod specific,pathways
R1510 T2225 T2226 amod signaling,pathways
R1512 T2226 T2237 nsubj pathways,remain
R1513 T2227 T2226 acl activated,pathways
R1515 T2228 T2227 prep during,activated
R1516 T2229 T2228 pobj necroptosis,during
R1517 T2230 T2229 cc and,necroptosis
R1519 T2231 T2232 poss their,connections
R1520 T2232 T2229 conj connections,necroptosis
R1521 T2233 T2232 prep to,connections
R1523 T2234 T2233 pobj RIP1,to
R1524 T2235 T2234 cc and,RIP1
R1525 T2236 T2234 conj RIP3,RIP1
R1527 T2237 T2237 ROOT remain,remain
R1528 T2238 T2239 advmod poorly,understood
R1529 T2239 T2237 acomp understood,remain
R1531 T2240 T2237 punct .,remain
R1532 T2241 T2243 amod Several,studies
R1534 T2242 T2243 amod recent,studies
R1535 T2243 T2246 nsubj studies,]
R1536 T2244 T2246 nmod [,]
R1538 T2245 T2246 nummod 10,]
R1539 T2246 T2264 nsubj ],suggested
R1540 T2247 T2246 punct ",",]
R1541 T2248 T2250 compound [,]
R1543 T2249 T2250 compound 11,]
R1544 T2250 T2246 conj ],]
R1545 T2251 T2250 punct ",",]
R1547 T2252 T2254 nmod [,]
R1548 T2253 T2254 nummod 12,]
R1549 T2254 T2250 conj ],]
R1551 T2255 T2254 punct ",",]
R1552 T2256 T2258 nmod [,]
R1553 T2257 T2258 nummod 13,]
R1555 T2258 T2254 conj ],]
R1556 T2259 T2258 punct ",",]
R1557 T2260 T2258 conj [,]
R1558 T2261 T2262 nummod 14,]
R1559 T2262 T2258 conj ],]
R1560 T2263 T2264 aux have,suggested
R1562 T2264 T2264 ROOT suggested,suggested
R1563 T2265 T2269 mark that,plays
R1564 T2266 T2268 compound JNK,activation
R1566 T2267 T2268 compound kinase,activation
R1567 T2268 T2269 nsubj activation,plays
R1568 T2269 T2264 ccomp plays,suggested
R1570 T2270 T2272 det an,role
R1571 T2271 T2272 amod important,role
R1573 T2272 T2269 dobj role,plays
R1574 T2273 T2272 prep during,role
R1575 T2274 T2273 pobj necroptosis,during
R1577 T2275 T2274 prep in,necroptosis
R1578 T2276 T2277 nummod L929,cells
R1579 T2277 T2275 pobj cells,in
R1581 T2278 T2272 amod downstream,role
R1582 T2279 T2269 prep from,plays
R1583 T2280 T2281 nummod RIP1,kinase
R1585 T2281 T2279 pobj kinase,from
R1586 T2282 T2264 punct .,suggested
R1589 T2284 T2283 pobj example,For

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2163 221-231 Positive_regulation denotes activation
T2162 305-316 Protein denotes RIP1 kinase
T2161 210-220 Protein denotes JNK kinase
T2160 44-53 Positive_regulation denotes activated
T2159 44-53 Positive_regulation denotes activated
T2158 107-111 Protein denotes RIP3
T2157 98-102 Protein denotes RIP1
R1451 T2157 T2159 themeOf RIP1,activated
R1452 T2158 T2160 themeOf RIP3,activated
R1454 T2161 T2163 themeOf JNK kinase,activation

test3

Id Subject Object Predicate Lexical cue
T830 305-309 Protein denotes RIP1
T829 107-111 Protein denotes RIP3
T828 98-102 Protein denotes RIP1
T849 305-309 Protein denotes RIP1
T848 107-111 Protein denotes RIP3
T847 98-102 Protein denotes RIP1