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PMC:3585731 / 26500-26674 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T11793 83-87 Protein denotes RIP1
T11792 50-53 Protein denotes S6K

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12139 168-173 NN denotes cells
T12138 163-167 NN denotes L929
T12137 160-162 IN denotes in
T12136 148-159 NN denotes necroptosis
T12135 141-147 IN denotes during
T12134 132-140 NN denotes activity
T12133 128-131 NN denotes JNK
T12132 125-127 IN denotes in
T12131 116-124 NN denotes increase
T12130 112-115 DT denotes the
T12129 108-111 IN denotes for
T12128 99-107 VB denotes required
T12127 96-98 VB denotes is
T12126 94-95 -COMMA- denotes ,
T12125 88-94 NN denotes kinase
T12124 83-87 NN denotes RIP1
T12123 78-82 IN denotes from
T12122 67-77 RB denotes downstream
T12121 60-66 VB denotes acting
T12120 58-59 -COMMA- denotes ,
T12119 54-58 NN denotes axis
T12118 39-53 NN denotes Akt-mTORC1-S6K
T12117 35-38 DT denotes the
T12116 30-34 IN denotes that
T12115 20-29 VB denotes suggested
T12114 15-19 NN denotes data
T12113 9-14 DT denotes these
T12112 7-8 -COMMA- denotes ,
T12111 0-7 RB denotes Overall
R7978 T12114 T12113 arg1Of data,these
R7979 T12114 T12115 arg1Of data,suggested
R7980 T12115 T12111 arg1Of suggested,Overall
R7981 T12115 T12112 arg1Of suggested,","
R7982 T12119 T12117 arg1Of axis,the
R7983 T12119 T12118 arg1Of axis,Akt-mTORC1-S6K
R7984 T12119 T12120 arg1Of axis,","
R7985 T12119 T12121 arg1Of axis,acting
R7986 T12119 T12127 arg1Of axis,is
R7987 T12119 T12128 arg2Of axis,required
R7988 T12121 T12122 arg1Of acting,downstream
R7989 T12121 T12123 arg1Of acting,from
R7990 T12125 T12123 arg2Of kinase,from
R7991 T12125 T12124 arg1Of kinase,RIP1
R7992 T12128 T12115 arg2Of required,suggested
R7993 T12128 T12116 arg1Of required,that
R7994 T12128 T12126 arg1Of required,","
R7995 T12128 T12127 arg2Of required,is
R7996 T12128 T12129 arg1Of required,for
R7997 T12131 T12129 arg2Of increase,for
R7998 T12131 T12130 arg1Of increase,the
R7999 T12131 T12132 arg1Of increase,in
R8000 T12131 T12135 arg1Of increase,during
R8001 T12131 T12137 arg1Of increase,in
R8002 T12134 T12132 arg2Of activity,in
R8003 T12134 T12133 arg1Of activity,JNK
R8004 T12136 T12135 arg2Of necroptosis,during
R8005 T12139 T12137 arg2Of cells,in
R8006 T12139 T12138 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11897 83-87 Protein denotes RIP1
T11896 50-53 Protein denotes S6K

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12276 83-87 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T12269 39-42 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12262 39-42 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12255 39-42 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T11915 148-159 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T11910 148-159 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T11905 128-131 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T11927 128-131 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T11931 168-173 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11930 43-49 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T11858 0-174 Sentence denotes Overall, these data suggested that the Akt-mTORC1-S6K axis, acting downstream from RIP1 kinase, is required for the increase in JNK activity during necroptosis in L929 cells.
T169 0-174 Sentence denotes Overall, these data suggested that the Akt-mTORC1-S6K axis, acting downstream from RIP1 kinase, is required for the increase in JNK activity during necroptosis in L929 cells.

simple1

Id Subject Object Predicate Lexical cue
T11943 83-87 Protein denotes RIP1
T11942 50-53 Protein denotes S6K

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12163 83-87 Protein denotes RIP1
T12162 50-53 Protein denotes S6K

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T12478 83-87 Protein denotes RIP1
T12477 50-53 Protein denotes S6K

DLUT931

Id Subject Object Predicate Lexical cue
T12448 60-66 Positive_regulation denotes acting
T12429 83-87 Protein denotes RIP1
T12428 50-53 Protein denotes S6K
R8244 T12428 T12448 themeOf S6K,acting

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12665 112-173 Positive_regulation denotes the increase in JNK activity during necroptosis in L929 cells
T12650 83-95 Protein denotes RIP1 kinase,
T12649 83-87 Protein denotes RIP1
T12634 128-131 Protein denotes JNK
R8385 T12634 T12665 themeOf JNK,the increase in JNK activity during necroptosis in L929 cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12407 112-115 DT denotes the
T12406 108-111 IN denotes for
T12405 99-107 VBN denotes required
T12404 96-98 VBZ denotes is
T12403 94-95 , denotes ,
T12402 88-94 NN denotes kinase
T12401 83-87 CD denotes RIP1
T12400 78-82 IN denotes from
T12399 67-77 JJ denotes downstream
T12398 60-66 VBG denotes acting
T12397 58-59 , denotes ,
T12396 54-58 NN denotes axis
T12395 39-53 JJ denotes Akt-mTORC1-S6K
T12394 35-38 DT denotes the
T12393 30-34 IN denotes that
T12392 20-29 VBD denotes suggested
T12391 15-19 NNS denotes data
T12390 9-14 DT denotes these
T12389 7-8 , denotes ,
T12388 0-7 RB denotes Overall
T12417 173-174 . denotes .
T12416 168-173 NNS denotes cells
T12415 163-167 CD denotes L929
T12414 160-162 IN denotes in
T12413 148-159 NN denotes necroptosis
T12412 141-147 IN denotes during
T12411 132-140 NN denotes activity
T12410 128-131 NNP denotes JNK
T12409 125-127 IN denotes in
T12408 116-124 NN denotes increase
R8203 T12388 T12392 advmod Overall,suggested
R8204 T12389 T12392 punct ",",suggested
R8205 T12390 T12391 det these,data
R8206 T12391 T12392 nsubj data,suggested
R8207 T12392 T12392 ROOT suggested,suggested
R8208 T12393 T12405 mark that,required
R8209 T12394 T12396 det the,axis
R8210 T12395 T12396 amod Akt-mTORC1-S6K,axis
R8211 T12396 T12405 nsubjpass axis,required
R8212 T12397 T12396 punct ",",axis
R8213 T12398 T12396 conj acting,axis
R8214 T12399 T12398 advmod downstream,acting
R8215 T12400 T12398 prep from,acting
R8216 T12401 T12402 nummod RIP1,kinase
R8217 T12402 T12400 pobj kinase,from
R8218 T12403 T12405 punct ",",required
R8219 T12404 T12405 auxpass is,required
R8220 T12405 T12392 ccomp required,suggested
R8221 T12406 T12405 prep for,required
R8222 T12407 T12408 det the,increase
R8223 T12408 T12406 pobj increase,for
R8224 T12409 T12408 prep in,increase
R8225 T12410 T12411 compound JNK,activity
R8226 T12411 T12409 pobj activity,in
R8227 T12412 T12408 prep during,increase
R8228 T12413 T12412 pobj necroptosis,during
R8229 T12414 T12408 prep in,increase
R8230 T12415 T12416 nummod L929,cells
R8231 T12416 T12414 pobj cells,in
R8232 T12417 T12392 punct .,suggested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12559 99-107 Positive_regulation denotes required
T12558 116-124 Positive_regulation denotes increase
T12557 128-131 Protein denotes JNK
T12556 83-94 Protein denotes RIP1 kinase
T12555 50-53 Protein denotes S6K
T12554 43-49 Protein denotes mTORC1
T12553 39-42 Protein denotes Akt
R8335 T12554 T12559 causeOf mTORC1,required
R8336 T12557 T12558 themeOf JNK,increase
R8337 T12558 T12559 themeOf increase,required

test3

Id Subject Object Predicate Lexical cue
T11851 83-87 Protein denotes RIP1
T11850 50-53 Protein denotes S6K
T11823 83-87 Protein denotes RIP1
T11822 50-53 Protein denotes S6K