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PMC:3585731 / 26322-26499 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T11811 134-149 Phosphorylation denotes phosphorylation
T11810 108-116 Positive_regulation denotes increase
T11809 70-80 Negative_regulation denotes attenuated
T11808 0-9 Negative_regulation denotes Knockdown
T11791 128-133 Protein denotes c-Jun
T11790 37-43 Protein denotes p70S6K
R7770 T11791 T11811 themeOf c-Jun,phosphorylation
R7775 T11808 T11809 causeOf Knockdown,attenuated
R7776 T11810 T11809 themeOf increase,attenuated
R7777 T11811 T11810 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12097 124-127 CC denotes and
T12096 120-123 NN denotes JNK
T12095 117-119 IN denotes in
T12094 108-116 NN denotes increase
T12093 85-107 JJ denotes necroptosis-associated
T12092 81-84 DT denotes the
T12091 70-80 VB denotes attenuated
T12090 65-69 RB denotes also
T12089 54-64 NN denotes PF-4708671
T12088 44-53 NN denotes inhibitor
T12087 37-43 NN denotes p70S6K
T12086 33-36 DT denotes the
T12085 29-32 CC denotes and
T12084 19-28 NN denotes rapamycin
T12083 17-18 -COMMA- denotes ,
T12082 13-17 NN denotes mTOR
T12081 10-12 IN denotes of
T12080 0-9 NN denotes Knockdown
T12110 175-176 -RRB- denotes )
T12109 172-175 NN denotes S5D
T12108 167-171 NNP denotes Fig.
T12107 165-166 -COMMA- denotes ,
T12106 164-165 NN denotes G
T12105 163-164 -COMMA- denotes ,
T12104 160-163 NN denotes S6E
T12103 158-159 -COMMA- denotes ,
T12102 156-158 NN denotes 6F
T12101 151-155 NNP denotes Fig.
T12100 150-151 -LRB- denotes (
T12099 134-149 NN denotes phosphorylation
T12098 128-133 NN denotes c-Jun
R7947 T12080 T12081 arg1Of Knockdown,of
R7948 T12080 T12091 arg1Of Knockdown,attenuated
R7949 T12082 T12083 arg1Of mTOR,","
R7950 T12083 T12085 arg1Of ",",and
R7951 T12084 T12083 arg2Of rapamycin,","
R7952 T12085 T12081 arg2Of and,of
R7953 T12089 T12085 arg2Of PF-4708671,and
R7954 T12089 T12086 arg1Of PF-4708671,the
R7955 T12089 T12087 arg1Of PF-4708671,p70S6K
R7956 T12089 T12088 arg1Of PF-4708671,inhibitor
R7957 T12091 T12090 arg1Of attenuated,also
R7958 T12094 T12091 arg2Of increase,attenuated
R7959 T12094 T12092 arg1Of increase,the
R7960 T12094 T12093 arg1Of increase,necroptosis-associated
R7961 T12094 T12095 arg1Of increase,in
R7962 T12096 T12097 arg1Of JNK,and
R7963 T12098 T12097 arg2Of c-Jun,and
R7964 T12099 T12095 arg2Of phosphorylation,in
R7965 T12099 T12096 arg1Of phosphorylation,JNK
R7966 T12099 T12098 arg1Of phosphorylation,c-Jun
R7967 T12099 T12100 arg1Of phosphorylation,(
R7968 T12102 T12100 arg2Of 6F,(
R7969 T12102 T12101 arg1Of 6F,Fig.
R7970 T12102 T12103 arg1Of 6F,","
R7971 T12102 T12105 arg1Of 6F,","
R7972 T12102 T12107 arg1Of 6F,","
R7973 T12104 T12103 arg2Of S6E,","
R7974 T12106 T12105 arg2Of G,","
R7975 T12109 T12107 arg2Of S5D,","
R7976 T12109 T12108 arg1Of S5D,Fig.
R7977 T12110 T12100 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11895 128-133 Protein denotes c-Jun
T11894 37-43 Protein denotes p70S6K

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12278 13-17 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T12274 128-133 http://www.uniprot.org/uniprot/P05412 denotes c-Jun

GO-BP

Id Subject Object Predicate Lexical cue
T11919 134-149 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11914 85-96 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T11909 85-96 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T11904 120-123 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T11926 120-123 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T11857 0-177 Sentence denotes Knockdown of mTOR, rapamycin and the p70S6K inhibitor PF-4708671 also attenuated the necroptosis-associated increase in JNK and c-Jun phosphorylation (Fig. 6F, S6E,G, Fig. S5D).
T168 0-177 Sentence denotes Knockdown of mTOR, rapamycin and the p70S6K inhibitor PF-4708671 also attenuated the necroptosis-associated increase in JNK and c-Jun phosphorylation (Fig. 6F, S6E,G, Fig. S5D).

simple1

Id Subject Object Predicate Lexical cue
T11941 128-133 Protein denotes c-Jun
T11940 37-43 Protein denotes p70S6K

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12181 70-80 Negative_regulation denotes attenuated
T12180 134-149 Phosphorylation denotes phosphorylation
T12179 108-116 Positive_regulation denotes increase
T12178 0-9 Negative_regulation denotes Knockdown
T12161 37-43 Protein denotes p70S6K
T12160 128-133 Protein denotes c-Jun
R8017 T12160 T12180 themeOf c-Jun,phosphorylation
R8018 T12161 T12178 themeOf p70S6K,Knockdown
R8025 T12179 T12181 themeOf increase,attenuated
R8026 T12180 T12179 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T12494 134-149 Phosphorylation denotes phosphorylation
T12493 70-80 Negative_regulation denotes attenuated
T12492 0-9 Negative_regulation denotes Knockdown
T12491 108-116 Positive_regulation denotes increase
T12476 37-43 Protein denotes p70S6K
T12475 128-133 Protein denotes c-Jun
R8281 T12475 T12494 themeOf c-Jun,phosphorylation
R8282 T12476 T12492 themeOf p70S6K,Knockdown
R8293 T12491 T12493 themeOf increase,attenuated
R8294 T12494 T12491 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T12447 70-80 Negative_regulation denotes attenuated
T12446 108-116 Positive_regulation denotes increase
T12445 134-149 Phosphorylation denotes phosphorylation
T12444 44-53 Negative_regulation denotes inhibitor
T12443 0-9 Negative_regulation denotes Knockdown
T12427 37-43 Protein denotes p70S6K
T12426 128-133 Protein denotes c-Jun
R8241 T12426 T12445 themeOf c-Jun,phosphorylation
R8242 T12427 T12443 themeOf p70S6K,Knockdown
R8243 T12427 T12444 themeOf p70S6K,inhibitor
R8260 T12443 T12447 causeOf Knockdown,attenuated
R8261 T12443 T12447 causeOf Knockdown,attenuated
R8262 T12444 T12443 themeOf inhibitor,Knockdown
R8263 T12445 T12446 themeOf phosphorylation,increase
R8264 T12446 T12447 themeOf increase,attenuated
R8265 T12446 T12447 themeOf increase,attenuated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12662 128-149 Phosphorylation denotes c-Jun phosphorylation
T12659 37-43 Protein denotes p70S6K
T12656 151-154 Protein denotes Fig
T12651 33-64 Entity denotes the p70S6K inhibitor PF-4708671
T12646 120-123 Protein denotes JNK
T12644 164-170 Protein denotes G, Fig
T12643 13-17 Protein denotes mTOR
T12636 33-64 Entity denotes the p70S6K inhibitor PF-4708671
T12629 19-28 Entity denotes rapamycin
T12627 128-133 Protein denotes c-Jun
R8382 T12627 T12662 themeOf c-Jun,c-Jun phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12387 176-177 . denotes .
T12386 175-176 -RRB- denotes )
T12385 172-175 CD denotes S5D
T12384 170-171 . denotes .
T12383 167-170 NNP denotes Fig
T12364 54-64 NN denotes PF-4708671
T12363 44-53 NN denotes inhibitor
T12362 37-43 JJ denotes p70S6K
T12361 33-36 DT denotes the
T12360 29-32 CC denotes and
T12359 19-28 NN denotes rapamycin
T12358 17-18 , denotes ,
T12357 13-17 NNP denotes mTOR
T12356 10-12 IN denotes of
T12355 0-9 NNP denotes Knockdown
T12382 165-166 , denotes ,
T12381 164-165 NNP denotes G
T12380 163-164 , denotes ,
T12379 160-163 NNP denotes S6E
T12378 158-159 , denotes ,
T12377 156-158 NNP denotes 6F
T12376 151-155 NNP denotes Fig.
T12375 150-151 -LRB- denotes (
T12374 134-149 NN denotes phosphorylation
T12373 128-133 JJ denotes c-Jun
T12372 124-127 CC denotes and
T12371 120-123 NNP denotes JNK
T12370 117-119 IN denotes in
T12369 108-116 NN denotes increase
T12368 85-107 JJ denotes necroptosis-associated
T12367 81-84 DT denotes the
T12366 70-80 VBD denotes attenuated
T12365 65-69 RB denotes also
R8170 T12355 T12366 nsubj Knockdown,attenuated
R8171 T12356 T12355 prep of,Knockdown
R8172 T12357 T12356 pobj mTOR,of
R8173 T12358 T12357 punct ",",mTOR
R8174 T12359 T12355 conj rapamycin,Knockdown
R8175 T12360 T12359 cc and,rapamycin
R8176 T12361 T12363 det the,inhibitor
R8177 T12362 T12363 amod p70S6K,inhibitor
R8178 T12363 T12364 compound inhibitor,PF-4708671
R8179 T12364 T12359 conj PF-4708671,rapamycin
R8180 T12365 T12366 advmod also,attenuated
R8181 T12366 T12366 ROOT attenuated,attenuated
R8182 T12367 T12369 det the,increase
R8183 T12368 T12369 amod necroptosis-associated,increase
R8184 T12369 T12366 dobj increase,attenuated
R8185 T12370 T12369 prep in,increase
R8186 T12371 T12374 nmod JNK,phosphorylation
R8187 T12372 T12371 cc and,JNK
R8188 T12373 T12374 amod c-Jun,phosphorylation
R8189 T12374 T12369 appos phosphorylation,increase
R8190 T12375 T12374 punct (,phosphorylation
R8191 T12376 T12377 compound Fig.,6F
R8192 T12377 T12374 appos 6F,phosphorylation
R8193 T12378 T12377 punct ",",6F
R8194 T12379 T12377 conj S6E,6F
R8195 T12380 T12379 punct ",",S6E
R8196 T12381 T12379 conj G,S6E
R8197 T12382 T12381 punct ",",G
R8198 T12383 T12381 conj Fig,G
R8199 T12384 T12366 punct .,attenuated
R8200 T12385 T12385 ROOT S5D,S5D
R8201 T12386 T12385 punct ),S5D
R8202 T12387 T12385 punct .,S5D

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12552 70-80 Negative_regulation denotes attenuated
T12551 70-80 Negative_regulation denotes attenuated
T12550 108-116 Positive_regulation denotes increase
T12549 108-116 Positive_regulation denotes increase
T12548 134-149 Phosphorylation denotes phosphorylation
T12547 134-149 Phosphorylation denotes phosphorylation
T12546 44-53 Negative_regulation denotes inhibitor
T12545 44-53 Negative_regulation denotes inhibitor
T12544 0-9 Negative_regulation denotes Knockdown
T12543 128-133 Protein denotes c-Jun
T12542 120-123 Protein denotes JNK
T12541 37-43 Protein denotes p70S6K
T12540 13-17 Protein denotes mTOR
R8324 T12540 T12544 themeOf mTOR,Knockdown
R8325 T12540 T12545 themeOf mTOR,inhibitor
R8326 T12541 T12546 themeOf p70S6K,inhibitor
R8327 T12542 T12547 themeOf JNK,phosphorylation
R8328 T12543 T12548 themeOf c-Jun,phosphorylation
R8329 T12544 T12551 causeOf Knockdown,attenuated
R8330 T12544 T12552 causeOf Knockdown,attenuated
R8331 T12547 T12549 themeOf phosphorylation,increase
R8332 T12548 T12550 themeOf phosphorylation,increase
R8333 T12549 T12551 themeOf increase,attenuated
R8334 T12550 T12552 themeOf increase,attenuated

test3

Id Subject Object Predicate Lexical cue
T11849 134-149 Phosphorylation denotes phosphorylation
T11848 128-133 Protein denotes c-Jun
T11847 108-116 Positive_regulation denotes increase
T11846 70-80 Negative_regulation denotes attenuated
T11845 37-43 Protein denotes p70S6K
T11844 0-9 Negative_regulation denotes Knockdown
T11821 128-133 Protein denotes c-Jun
T11820 37-43 Protein denotes p70S6K
R7788 T11844 T11846 causeOf Knockdown,attenuated
R7789 T11847 T11846 themeOf increase,attenuated
R7790 T11848 T11849 themeOf c-Jun,phosphorylation
R7791 T11849 T11847 themeOf phosphorylation,increase
R7792 T11849 T11846 themeOf phosphorylation,attenuated