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PMC:3585731 / 2613-2809 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T798 153-157 Protein denotes RIP3
T797 144-148 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1332 184-191 JJ denotes Several
T1331 172-182 VB denotes understood
T1330 165-171 RB denotes poorly
T1329 158-164 VB denotes remain
T1328 153-157 NN denotes RIP3
T1327 149-152 CC denotes and
T1326 144-148 NN denotes RIP1
T1325 141-143 TO denotes to
T1324 129-140 NN denotes connections
T1323 123-128 PRP-DOLLAR- denotes their
T1322 119-122 CC denotes and
T1321 107-118 NN denotes necroptosis
T1320 100-106 IN denotes during
T1319 90-99 VB denotes activated
T1318 81-89 NN denotes pathways
T1317 71-80 NN denotes signaling
T1316 62-70 JJ denotes specific
T1315 58-61 DT denotes the
T1314 56-57 -COMMA- denotes ,
T1313 49-56 RB denotes However
T1312 42-47 NN denotes death
T1311 37-41 NN denotes cell
T1310 34-36 IN denotes of
T1309 29-33 NN denotes form
T1308 24-28 DT denotes this
T1307 21-23 IN denotes of
T1306 11-20 NN denotes mediators
T1305 8-10 IN denotes of
R745 T1306 T1305 arg2Of mediators,of
R746 T1306 T1307 arg1Of mediators,of
R747 T1309 T1307 arg2Of form,of
R748 T1309 T1308 arg1Of form,this
R749 T1309 T1310 arg1Of form,of
R750 T1312 T1310 arg2Of death,of
R751 T1312 T1311 arg1Of death,cell
R752 T1318 T1315 arg1Of pathways,the
R753 T1318 T1316 arg1Of pathways,specific
R754 T1318 T1317 arg1Of pathways,signaling
R755 T1318 T1319 arg2Of pathways,activated
R756 T1318 T1322 arg1Of pathways,and
R757 T1319 T1320 arg1Of activated,during
R758 T1321 T1320 arg2Of necroptosis,during
R759 T1322 T1329 arg1Of and,remain
R760 T1322 T1331 arg2Of and,understood
R761 T1324 T1322 arg2Of connections,and
R762 T1324 T1323 arg1Of connections,their
R763 T1324 T1325 arg1Of connections,to
R764 T1326 T1327 arg1Of RIP1,and
R765 T1327 T1325 arg2Of and,to
R766 T1328 T1327 arg2Of RIP3,and
R767 T1331 T1313 arg1Of understood,However
R768 T1331 T1314 arg1Of understood,","
R769 T1331 T1329 arg2Of understood,remain
R770 T1331 T1330 arg1Of understood,poorly

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T935 153-157 Protein denotes RIP3
T934 144-148 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1798 144-148 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T1029 71-99 http://purl.obolibrary.org/obo/GO_1903265 denotes signaling pathways activated
T1028 71-99 http://purl.obolibrary.org/obo/GO_1902843 denotes signaling pathways activated
T1027 71-99 http://purl.obolibrary.org/obo/GO_1902046 denotes signaling pathways activated
T1026 71-99 http://purl.obolibrary.org/obo/GO_1900236 denotes signaling pathways activated
T1025 71-99 http://purl.obolibrary.org/obo/GO_0038084 denotes signaling pathways activated
T1024 71-99 http://purl.obolibrary.org/obo/GO_0009873 denotes signaling pathways activated
T1023 71-99 http://purl.obolibrary.org/obo/GO_1902204 denotes signaling pathways activated
T1022 71-99 http://purl.obolibrary.org/obo/GO_1901186 denotes signaling pathways activated
T1021 71-99 http://purl.obolibrary.org/obo/GO_0033211 denotes signaling pathways activated
T1020 71-99 http://purl.obolibrary.org/obo/GO_0009736 denotes signaling pathways activated
T1019 71-89 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T1015 71-80 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T998 42-47 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T976 107-118 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T957 107-118 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T991 37-47 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death

GO-CC

Id Subject Object Predicate Lexical cue
T1059 37-41 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T887 49-183 Sentence denotes However, the specific signaling pathways activated during necroptosis and their connections to RIP1 and RIP3 remain poorly understood.
T21 49-183 Sentence denotes However, the specific signaling pathways activated during necroptosis and their connections to RIP1 and RIP3 remain poorly understood.

simple1

Id Subject Object Predicate Lexical cue
T1069 153-157 Protein denotes RIP3
T1068 144-148 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1752 144-148 Protein denotes RIP1
T1753 153-157 Protein denotes RIP3

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2125 153-157 Protein denotes RIP3
T2124 144-148 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T1872 153-157 Protein denotes RIP3
T1871 144-148 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2775 153-157 Protein denotes RIP3
T2740 144-148 Protein denotes RIP1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2241 184-191 JJ denotes Several
T2240 182-183 . denotes .
T2239 172-182 VBN denotes understood
T2238 165-171 RB denotes poorly
T2237 158-164 VBP denotes remain
T2236 153-157 CD denotes RIP3
T2235 149-152 CC denotes and
T2234 144-148 CD denotes RIP1
T2233 141-143 TO denotes to
T2232 129-140 NNS denotes connections
T2231 123-128 PRP$ denotes their
T2230 119-122 CC denotes and
T2229 107-118 NN denotes necroptosis
T2228 100-106 IN denotes during
T2227 90-99 VBN denotes activated
T2226 81-89 NNS denotes pathways
T2225 71-80 VBG denotes signaling
T2224 62-70 JJ denotes specific
T2223 58-61 DT denotes the
T2222 56-57 , denotes ,
T2221 49-56 RB denotes However
T2220 47-48 . denotes .
T2219 42-47 NN denotes death
T2218 37-41 NN denotes cell
T2217 34-36 IN denotes of
T2216 29-33 NN denotes form
T2215 24-28 DT denotes this
T2214 21-23 IN denotes of
T2213 11-20 NNS denotes mediators
T2212 8-10 IN denotes of
R1491 T2213 T2212 pobj mediators,of
R1492 T2214 T2213 prep of,mediators
R1494 T2215 T2216 det this,form
R1496 T2216 T2214 pobj form,of
R1499 T2217 T2216 prep of,form
R1502 T2218 T2219 compound cell,death
R1503 T2219 T2217 pobj death,of
R1505 T2221 T2237 advmod However,remain
R1506 T2222 T2237 punct ",",remain
R1507 T2223 T2226 det the,pathways
R1509 T2224 T2226 amod specific,pathways
R1510 T2225 T2226 amod signaling,pathways
R1512 T2226 T2237 nsubj pathways,remain
R1513 T2227 T2226 acl activated,pathways
R1515 T2228 T2227 prep during,activated
R1516 T2229 T2228 pobj necroptosis,during
R1517 T2230 T2229 cc and,necroptosis
R1519 T2231 T2232 poss their,connections
R1520 T2232 T2229 conj connections,necroptosis
R1521 T2233 T2232 prep to,connections
R1523 T2234 T2233 pobj RIP1,to
R1524 T2235 T2234 cc and,RIP1
R1525 T2236 T2234 conj RIP3,RIP1
R1527 T2237 T2237 ROOT remain,remain
R1528 T2238 T2239 advmod poorly,understood
R1529 T2239 T2237 acomp understood,remain
R1531 T2240 T2237 punct .,remain

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2160 90-99 Positive_regulation denotes activated
T2159 90-99 Positive_regulation denotes activated
T2158 153-157 Protein denotes RIP3
T2157 144-148 Protein denotes RIP1
R1451 T2157 T2159 themeOf RIP1,activated
R1452 T2158 T2160 themeOf RIP3,activated

test3

Id Subject Object Predicate Lexical cue
T829 153-157 Protein denotes RIP3
T828 144-148 Protein denotes RIP1
T848 153-157 Protein denotes RIP3
T847 144-148 Protein denotes RIP1