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PMC:3585731 / 25599-26674 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T11782 103-107 Protein denotes TNFα
T11811 857-872 Phosphorylation denotes phosphorylation
T11810 831-839 Positive_regulation denotes increase
T11809 793-803 Negative_regulation denotes attenuated
T11808 723-732 Negative_regulation denotes Knockdown
T11807 695-710 Phosphorylation denotes phosphorylation
T11806 673-680 Positive_regulation denotes induced
T11805 647-655 Positive_regulation denotes increase
T11804 605-614 Negative_regulation denotes inhibited
T11803 582-592 Negative_regulation denotes inhibition
T11802 464-479 Phosphorylation denotes phosphorylation
T11801 438-446 Positive_regulation denotes increase
T11800 428-437 Regulation denotes dependent
T11799 401-411 Negative_regulation denotes suppressed
T11798 371-381 Negative_regulation denotes inhibition
T11797 328-337 Negative_regulation denotes Knockdown
T11796 231-239 Positive_regulation denotes increase
T11795 221-226 Negative_regulation denotes block
T11794 207-217 Negative_regulation denotes inhibitors
T11793 984-988 Protein denotes RIP1
T11792 951-954 Protein denotes S6K
T11791 851-856 Protein denotes c-Jun
T11790 760-766 Protein denotes p70S6K
T11789 689-694 Protein denotes c-Jun
T11788 659-663 Protein denotes bFGF
T11787 544-548 Protein denotes RIP1
T11786 458-463 Protein denotes c-Jun
T11785 363-367 Protein denotes Akt2
T11784 354-358 Protein denotes Akt1
T11783 243-247 Protein denotes TNFα
R7765 T11783 T11796 themeOf TNFα,increase
R7766 T11784 T11797 themeOf Akt1,Knockdown
R7767 T11785 T11797 themeOf Akt2,Knockdown
R7768 T11786 T11802 themeOf c-Jun,phosphorylation
R7769 T11789 T11807 themeOf c-Jun,phosphorylation
R7770 T11791 T11811 themeOf c-Jun,phosphorylation
R7771 T11796 T11795 themeOf increase,block
R7772 T11802 T11801 themeOf phosphorylation,increase
R7773 T11803 T11804 causeOf inhibition,inhibited
R7774 T11807 T11806 themeOf phosphorylation,induced
R7775 T11808 T11809 causeOf Knockdown,attenuated
R7776 T11810 T11809 themeOf increase,attenuated
R7777 T11811 T11810 themeOf phosphorylation,increase

2_test

Id Subject Object Predicate Lexical cue
23469174-20539307-90505443 143-145 20539307 denotes 13
23469174-15131264-90505444 149-151 15131264 denotes 14
23469174-22695613-90505445 155-157 22695613 denotes 15
23469174-17560373-90505446 161-163 17560373 denotes 34

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12097 847-850 CC denotes and
T12096 843-846 NN denotes JNK
T12095 840-842 IN denotes in
T12094 831-839 NN denotes increase
T12093 808-830 JJ denotes necroptosis-associated
T12092 804-807 DT denotes the
T12091 793-803 VB denotes attenuated
T12090 788-792 RB denotes also
T12089 777-787 NN denotes PF-4708671
T12088 767-776 NN denotes inhibitor
T12087 760-766 NN denotes p70S6K
T12086 756-759 DT denotes the
T12085 752-755 CC denotes and
T12084 742-751 NN denotes rapamycin
T12083 740-741 -COMMA- denotes ,
T12082 736-740 NN denotes mTOR
T12081 733-735 IN denotes of
T12080 723-732 NN denotes Knockdown
T12079 720-721 -RRB- denotes )
T12078 717-720 NN denotes S6F
T12077 712-716 NN denotes Fig.
T12076 711-712 -LRB- denotes (
T12075 695-710 NN denotes phosphorylation
T12074 689-694 NN denotes c-Jun
T12073 685-688 CC denotes and
T12072 681-684 NN denotes JNK
T12071 673-680 VB denotes induced
T12070 659-672 NN denotes bFGF/zVAD.fmk
T12069 656-658 IN denotes in
T12068 647-655 NN denotes increase
T12067 645-646 -COMMA- denotes ,
T12066 640-645 JJ denotes early
T12065 636-639 DT denotes the
T12064 632-635 RB denotes not
T12063 628-631 CC denotes but
T12062 626-627 -COMMA- denotes ,
T12061 619-626 VB denotes delayed
T12060 615-618 DT denotes the
T12059 605-614 VB denotes inhibited
T12058 600-604 RB denotes only
T12057 596-599 NN denotes Akt
T12056 593-595 IN denotes of
T12055 582-592 NN denotes inhibition
T12054 580-581 -COMMA- denotes ,
T12053 569-580 RB denotes Importantly
T12052 557-567 NN denotes activation
T12051 553-556 NN denotes JNK
T12050 549-552 CC denotes and
T12049 544-548 NN denotes RIP1
T12048 536-543 IN denotes between
T12047 531-535 NN denotes link
T12046 529-530 DT denotes a
T12045 521-528 VB denotes provide
T12044 517-520 MD denotes may
T12043 513-516 NN denotes Akt
T12042 508-512 IN denotes that
T12041 497-507 VB denotes suggesting
T12040 495-496 -RRB- denotes )
T12039 494-495 NN denotes E
T12038 493-494 -COMMA- denotes ,
T12037 490-493 NN denotes S6D
T12036 488-489 -COMMA- denotes ,
T12035 486-488 NN denotes 6E
T12034 481-485 NNP denotes Fig.
T12033 480-481 -LRB- denotes (
T12032 464-479 NN denotes phosphorylation
T12031 458-463 NN denotes c-Jun
T12030 454-457 CC denotes and
T12029 450-453 NN denotes JNK
T12028 447-449 IN denotes in
T12027 438-446 NN denotes increase
T12026 428-437 JJ denotes dependent
T12025 416-427 NN denotes necroptosis
T12024 412-415 DT denotes the
T12023 401-411 VB denotes suppressed
T12022 389-400 RB denotes prominently
T12021 385-388 NN denotes Akt
T12020 382-384 IN denotes of
T12019 371-381 NN denotes inhibition
T12018 368-370 CC denotes or
T12017 363-367 NN denotes Akt2
T12016 359-362 CC denotes and
T12015 354-358 NN denotes Akt1
T12014 345-353 NN denotes isoforms
T12013 341-344 NN denotes Akt
T12012 338-340 IN denotes of
T12011 328-337 NN denotes Knockdown
T12010 315-326 NN denotes necroptosis
T12009 308-314 IN denotes during
T12008 304-307 NN denotes JNK
T12007 301-303 IN denotes of
T12006 290-300 NN denotes activation
T12005 286-289 DT denotes the
T12004 283-285 IN denotes in
T12003 278-282 NN denotes role
T12002 272-277 PRP-DOLLAR- denotes their
T12001 264-271 VB denotes examine
T12000 261-263 TO denotes to
T11999 258-260 PRP denotes us
T11998 253-257 VB denotes lead
T11997 248-252 NN denotes mRNA
T11996 243-247 NN denotes TNFα
T11995 240-242 IN denotes in
T11994 231-239 NN denotes increase
T11993 227-230 DT denotes the
T11992 221-226 VB denotes block
T11991 218-220 TO denotes to
T11990 207-217 NN denotes inhibitors
T11989 200-206 NN denotes mTORC1
T11988 196-199 CC denotes and
T11987 192-195 NN denotes Akt
T11986 189-191 IN denotes of
T11985 181-188 NN denotes ability
T11984 177-180 DT denotes the
T11983 175-176 -COMMA- denotes ,
T11982 166-175 RB denotes Therefore
T11981 163-164 -RRB- denotes ]
T11980 161-163 CD denotes 34
T11979 160-161 -LRB- denotes [
T11978 158-159 -COMMA- denotes ,
T11977 157-158 -RRB- denotes ]
T11976 155-157 CD denotes 15
T11975 154-155 -LRB- denotes [
T11974 152-153 -COMMA- denotes ,
T11973 151-152 -RRB- denotes ]
T11972 149-151 CD denotes 14
T11971 148-149 -LRB- denotes [
T11970 146-147 -COMMA- denotes ,
T11969 145-146 -RRB- denotes ]
T11968 143-145 CD denotes 13
T11967 142-143 -LRB- denotes [
T11966 134-141 NN denotes systems
T11965 131-133 IN denotes of
T11964 123-130 NN denotes variety
T11963 121-122 DT denotes a
T11962 118-120 IN denotes in
T11961 108-117 NN denotes synthesis
T11960 103-107 NN denotes TNFα
T11959 100-102 IN denotes of
T11958 90-99 NN denotes regulator
T11957 73-89 JJ denotes well-established
T11956 71-72 DT denotes a
T11955 68-70 VB denotes is
T11954 64-67 NN denotes JNK
T11953 52-63 NN denotes Necroptosis
T11952 45-51 IN denotes during
T11951 41-44 NN denotes JNK
T11950 38-40 IN denotes of
T11949 27-37 NN denotes Activation
T11948 23-26 DT denotes the
T11947 15-22 NN denotes Control
T11946 8-14 NN denotes mTORC1
T11945 4-7 CC denotes and
T11944 0-3 NN denotes Akt
T12139 1069-1074 NN denotes cells
T12138 1064-1068 NN denotes L929
T12137 1061-1063 IN denotes in
T12136 1049-1060 NN denotes necroptosis
T12135 1042-1048 IN denotes during
T12134 1033-1041 NN denotes activity
T12133 1029-1032 NN denotes JNK
T12132 1026-1028 IN denotes in
T12131 1017-1025 NN denotes increase
T12130 1013-1016 DT denotes the
T12129 1009-1012 IN denotes for
T12128 1000-1008 VB denotes required
T12127 997-999 VB denotes is
T12126 995-996 -COMMA- denotes ,
T12125 989-995 NN denotes kinase
T12124 984-988 NN denotes RIP1
T12123 979-983 IN denotes from
T12122 968-978 RB denotes downstream
T12121 961-967 VB denotes acting
T12120 959-960 -COMMA- denotes ,
T12119 955-959 NN denotes axis
T12118 940-954 NN denotes Akt-mTORC1-S6K
T12117 936-939 DT denotes the
T12116 931-935 IN denotes that
T12115 921-930 VB denotes suggested
T12114 916-920 NN denotes data
T12113 910-915 DT denotes these
T12112 908-909 -COMMA- denotes ,
T12111 901-908 RB denotes Overall
T12110 898-899 -RRB- denotes )
T12109 895-898 NN denotes S5D
T12108 890-894 NNP denotes Fig.
T12107 888-889 -COMMA- denotes ,
T12106 887-888 NN denotes G
T12105 886-887 -COMMA- denotes ,
T12104 883-886 NN denotes S6E
T12103 881-882 -COMMA- denotes ,
T12102 879-881 NN denotes 6F
T12101 874-878 NNP denotes Fig.
T12100 873-874 -LRB- denotes (
T12099 857-872 NN denotes phosphorylation
T12098 851-856 NN denotes c-Jun
R7811 T11944 T11945 arg1Of Akt,and
R7812 T11947 T11946 arg2Of Control,mTORC1
R7813 T11949 T11945 arg2Of Activation,and
R7814 T11949 T11946 arg1Of Activation,mTORC1
R7815 T11949 T11948 arg1Of Activation,the
R7816 T11949 T11950 arg1Of Activation,of
R7817 T11949 T11952 arg1Of Activation,during
R7818 T11951 T11950 arg2Of JNK,of
R7819 T11953 T11952 arg2Of Necroptosis,during
R7820 T11954 T11955 arg1Of JNK,is
R7821 T11955 T11970 arg1Of is,","
R7822 T11955 T11971 arg1Of is,[
R7823 T11955 T11974 arg1Of is,","
R7824 T11955 T11975 arg1Of is,[
R7825 T11955 T11978 arg1Of is,","
R7826 T11955 T11979 arg1Of is,[
R7827 T11958 T11955 arg2Of regulator,is
R7828 T11958 T11956 arg1Of regulator,a
R7829 T11958 T11957 arg1Of regulator,well-established
R7830 T11958 T11959 arg1Of regulator,of
R7831 T11961 T11959 arg2Of synthesis,of
R7832 T11961 T11960 arg1Of synthesis,TNFα
R7833 T11961 T11962 arg1Of synthesis,in
R7834 T11964 T11962 arg2Of variety,in
R7835 T11964 T11963 arg1Of variety,a
R7836 T11964 T11965 arg1Of variety,of
R7837 T11966 T11965 arg2Of systems,of
R7838 T11966 T11967 arg1Of systems,[
R7839 T11968 T11967 arg2Of 13,[
R7840 T11969 T11967 arg3Of ],[
R7841 T11972 T11971 arg2Of 14,[
R7842 T11973 T11971 arg3Of ],[
R7843 T11976 T11975 arg2Of 15,[
R7844 T11977 T11975 arg3Of ],[
R7845 T11980 T11979 arg2Of 34,[
R7846 T11981 T11979 arg3Of ],[
R7847 T11985 T11984 arg1Of ability,the
R7848 T11985 T11986 arg1Of ability,of
R7849 T11985 T11991 modOf ability,to
R7850 T11985 T11998 arg1Of ability,lead
R7851 T11987 T11988 arg1Of Akt,and
R7852 T11989 T11988 arg2Of mTORC1,and
R7853 T11990 T11986 arg2Of inhibitors,of
R7854 T11990 T11987 arg1Of inhibitors,Akt
R7855 T11990 T11989 arg1Of inhibitors,mTORC1
R7856 T11992 T11991 arg1Of block,to
R7857 T11994 T11992 arg2Of increase,block
R7858 T11994 T11993 arg1Of increase,the
R7859 T11994 T11995 arg1Of increase,in
R7860 T11997 T11995 arg2Of mRNA,in
R7861 T11997 T11996 arg1Of mRNA,TNFα
R7862 T11998 T11982 arg1Of lead,Therefore
R7863 T11998 T11983 arg1Of lead,","
R7864 T11999 T11998 arg2Of us,lead
R7865 T11999 T12001 arg1Of us,examine
R7866 T12001 T11998 arg3Of examine,lead
R7867 T12001 T12000 arg1Of examine,to
R7868 T12001 T12004 arg1Of examine,in
R7869 T12003 T12001 arg2Of role,examine
R7870 T12003 T12002 arg1Of role,their
R7871 T12006 T12004 arg2Of activation,in
R7872 T12006 T12005 arg1Of activation,the
R7873 T12006 T12007 arg1Of activation,of
R7874 T12006 T12009 arg1Of activation,during
R7875 T12008 T12007 arg2Of JNK,of
R7876 T12010 T12009 arg2Of necroptosis,during
R7877 T12011 T12012 arg1Of Knockdown,of
R7878 T12011 T12023 arg1Of Knockdown,suppressed
R7879 T12015 T12013 arg1Of Akt1,Akt
R7880 T12015 T12014 arg1Of Akt1,isoforms
R7881 T12015 T12016 arg1Of Akt1,and
R7882 T12016 T12012 arg2Of and,of
R7883 T12017 T12018 arg1Of Akt2,or
R7884 T12018 T12016 arg2Of or,and
R7885 T12018 T12020 arg1Of or,of
R7886 T12019 T12018 arg2Of inhibition,or
R7887 T12021 T12020 arg2Of Akt,of
R7888 T12023 T12022 arg1Of suppressed,prominently
R7889 T12023 T12033 arg1Of suppressed,(
R7890 T12023 T12041 modOf suppressed,suggesting
R7891 T12026 T12025 arg1Of dependent,necroptosis
R7892 T12027 T12023 arg2Of increase,suppressed
R7893 T12027 T12024 arg1Of increase,the
R7894 T12027 T12026 arg1Of increase,dependent
R7895 T12027 T12028 arg1Of increase,in
R7896 T12029 T12030 arg1Of JNK,and
R7897 T12031 T12030 arg2Of c-Jun,and
R7898 T12032 T12028 arg2Of phosphorylation,in
R7899 T12032 T12029 arg1Of phosphorylation,JNK
R7900 T12032 T12031 arg1Of phosphorylation,c-Jun
R7901 T12035 T12033 arg2Of 6E,(
R7902 T12035 T12034 arg1Of 6E,Fig.
R7903 T12035 T12036 arg1Of 6E,","
R7904 T12035 T12038 arg1Of 6E,","
R7905 T12037 T12036 arg2Of S6D,","
R7906 T12039 T12038 arg2Of E,","
R7907 T12040 T12033 arg3Of ),(
R7908 T12043 T12044 arg1Of Akt,may
R7909 T12043 T12045 arg1Of Akt,provide
R7910 T12045 T12041 arg2Of provide,suggesting
R7911 T12045 T12042 arg1Of provide,that
R7912 T12045 T12044 arg2Of provide,may
R7913 T12047 T12045 arg2Of link,provide
R7914 T12047 T12046 arg1Of link,a
R7915 T12047 T12048 arg1Of link,between
R7916 T12049 T12050 arg1Of RIP1,and
R7917 T12051 T12050 arg2Of JNK,and
R7918 T12052 T12048 arg2Of activation,between
R7919 T12052 T12049 arg1Of activation,RIP1
R7920 T12052 T12051 arg1Of activation,JNK
R7921 T12055 T12056 arg1Of inhibition,of
R7922 T12055 T12059 arg1Of inhibition,inhibited
R7923 T12057 T12056 arg2Of Akt,of
R7924 T12059 T12053 arg1Of inhibited,Importantly
R7925 T12059 T12054 arg1Of inhibited,","
R7926 T12059 T12058 arg1Of inhibited,only
R7927 T12063 T12064 arg1Of but,not
R7928 T12066 T12063 arg1Of early,but
R7929 T12066 T12065 arg1Of early,the
R7930 T12068 T12059 arg2Of increase,inhibited
R7931 T12068 T12060 arg1Of increase,the
R7932 T12068 T12061 arg2Of increase,delayed
R7933 T12068 T12062 arg1Of increase,","
R7934 T12068 T12066 arg1Of increase,early
R7935 T12068 T12067 arg1Of increase,","
R7936 T12068 T12069 arg1Of increase,in
R7937 T12070 T12069 arg2Of bFGF/zVAD.fmk,in
R7938 T12072 T12071 arg2Of JNK,induced
R7939 T12072 T12073 arg1Of JNK,and
R7940 T12073 T12059 arg3Of and,inhibited
R7941 T12075 T12073 arg2Of phosphorylation,and
R7942 T12075 T12074 arg1Of phosphorylation,c-Jun
R7943 T12075 T12076 arg1Of phosphorylation,(
R7944 T12078 T12076 arg2Of S6F,(
R7945 T12078 T12077 arg1Of S6F,Fig.
R7946 T12079 T12076 arg3Of ),(
R7947 T12080 T12081 arg1Of Knockdown,of
R7948 T12080 T12091 arg1Of Knockdown,attenuated
R7949 T12082 T12083 arg1Of mTOR,","
R7950 T12083 T12085 arg1Of ",",and
R7951 T12084 T12083 arg2Of rapamycin,","
R7952 T12085 T12081 arg2Of and,of
R7953 T12089 T12085 arg2Of PF-4708671,and
R7954 T12089 T12086 arg1Of PF-4708671,the
R7955 T12089 T12087 arg1Of PF-4708671,p70S6K
R7956 T12089 T12088 arg1Of PF-4708671,inhibitor
R7957 T12091 T12090 arg1Of attenuated,also
R7958 T12094 T12091 arg2Of increase,attenuated
R7959 T12094 T12092 arg1Of increase,the
R7960 T12094 T12093 arg1Of increase,necroptosis-associated
R7961 T12094 T12095 arg1Of increase,in
R7962 T12096 T12097 arg1Of JNK,and
R7963 T12098 T12097 arg2Of c-Jun,and
R7964 T12099 T12095 arg2Of phosphorylation,in
R7965 T12099 T12096 arg1Of phosphorylation,JNK
R7966 T12099 T12098 arg1Of phosphorylation,c-Jun
R7967 T12099 T12100 arg1Of phosphorylation,(
R7968 T12102 T12100 arg2Of 6F,(
R7969 T12102 T12101 arg1Of 6F,Fig.
R7970 T12102 T12103 arg1Of 6F,","
R7971 T12102 T12105 arg1Of 6F,","
R7972 T12102 T12107 arg1Of 6F,","
R7973 T12104 T12103 arg2Of S6E,","
R7974 T12106 T12105 arg2Of G,","
R7975 T12109 T12107 arg2Of S5D,","
R7976 T12109 T12108 arg1Of S5D,Fig.
R7977 T12110 T12100 arg3Of ),(
R7978 T12114 T12113 arg1Of data,these
R7979 T12114 T12115 arg1Of data,suggested
R7980 T12115 T12111 arg1Of suggested,Overall
R7981 T12115 T12112 arg1Of suggested,","
R7982 T12119 T12117 arg1Of axis,the
R7983 T12119 T12118 arg1Of axis,Akt-mTORC1-S6K
R7984 T12119 T12120 arg1Of axis,","
R7985 T12119 T12121 arg1Of axis,acting
R7986 T12119 T12127 arg1Of axis,is
R7987 T12119 T12128 arg2Of axis,required
R7988 T12121 T12122 arg1Of acting,downstream
R7989 T12121 T12123 arg1Of acting,from
R7990 T12125 T12123 arg2Of kinase,from
R7991 T12125 T12124 arg1Of kinase,RIP1
R7992 T12128 T12115 arg2Of required,suggested
R7993 T12128 T12116 arg1Of required,that
R7994 T12128 T12126 arg1Of required,","
R7995 T12128 T12127 arg2Of required,is
R7996 T12128 T12129 arg1Of required,for
R7997 T12131 T12129 arg2Of increase,for
R7998 T12131 T12130 arg1Of increase,the
R7999 T12131 T12132 arg1Of increase,in
R8000 T12131 T12135 arg1Of increase,during
R8001 T12131 T12137 arg1Of increase,in
R8002 T12134 T12132 arg2Of activity,in
R8003 T12134 T12133 arg1Of activity,JNK
R8004 T12136 T12135 arg2Of necroptosis,during
R8005 T12139 T12137 arg2Of cells,in
R8006 T12139 T12138 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11897 984-988 Protein denotes RIP1
T11896 951-954 Protein denotes S6K
T11895 851-856 Protein denotes c-Jun
T11894 760-766 Protein denotes p70S6K
T11893 689-694 Protein denotes c-Jun
T11892 659-663 Protein denotes bFGF
T11891 544-548 Protein denotes RIP1
T11890 458-463 Protein denotes c-Jun
T11889 363-367 Protein denotes Akt2
T11888 354-358 Protein denotes Akt1
T11887 243-247 Protein denotes TNFα
T11886 103-107 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12278 736-740 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T12277 659-663 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T12276 984-988 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T12275 544-548 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T12274 851-856 http://www.uniprot.org/uniprot/P05412 denotes c-Jun
T12273 689-694 http://www.uniprot.org/uniprot/P05412 denotes c-Jun
T12272 458-463 http://www.uniprot.org/uniprot/P05412 denotes c-Jun
T12271 243-247 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T12270 103-107 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T12269 940-943 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12268 596-599 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12267 513-516 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12266 385-388 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12265 341-344 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12264 192-195 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12263 0-3 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T12262 940-943 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12261 596-599 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12260 513-516 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12259 385-388 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12258 341-344 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12257 192-195 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12256 0-3 http://www.uniprot.org/uniprot/P31751 denotes Akt
T12255 940-943 http://www.uniprot.org/uniprot/P31749 denotes Akt
T12254 596-599 http://www.uniprot.org/uniprot/P31749 denotes Akt
T12253 513-516 http://www.uniprot.org/uniprot/P31749 denotes Akt
T12252 385-388 http://www.uniprot.org/uniprot/P31749 denotes Akt
T12251 341-344 http://www.uniprot.org/uniprot/P31749 denotes Akt
T12250 192-195 http://www.uniprot.org/uniprot/P31749 denotes Akt
T12249 0-3 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T11919 857-872 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11918 695-710 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11917 464-479 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11916 108-117 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T11915 1049-1060 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T11914 808-819 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T11913 416-427 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T11912 315-326 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T11911 52-63 http://purl.obolibrary.org/obo/GO_0097528 denotes Necroptosis
T11910 1049-1060 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T11909 808-819 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T11908 416-427 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T11907 315-326 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T11906 52-63 http://purl.obolibrary.org/obo/GO_0070266 denotes Necroptosis
T11905 1029-1032 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11904 843-846 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11903 681-684 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11902 553-556 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11901 450-453 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11900 304-307 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11899 64-67 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11898 41-44 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T11922 304-307 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11921 64-67 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11920 41-44 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11927 1029-1032 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11926 843-846 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11925 681-684 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11924 553-556 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T11923 450-453 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T11931 1069-1074 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11930 944-950 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T11929 200-206 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T11928 8-14 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T11858 901-1075 Sentence denotes Overall, these data suggested that the Akt-mTORC1-S6K axis, acting downstream from RIP1 kinase, is required for the increase in JNK activity during necroptosis in L929 cells.
T11857 723-900 Sentence denotes Knockdown of mTOR, rapamycin and the p70S6K inhibitor PF-4708671 also attenuated the necroptosis-associated increase in JNK and c-Jun phosphorylation (Fig. 6F, S6E,G, Fig. S5D).
T11856 569-722 Sentence denotes Importantly, inhibition of Akt only inhibited the delayed, but not the early, increase in bFGF/zVAD.fmk induced JNK and c-Jun phosphorylation (Fig. S6F).
T11855 328-568 Sentence denotes Knockdown of Akt isoforms Akt1 and Akt2 or inhibition of Akt prominently suppressed the necroptosis dependent increase in JNK and c-Jun phosphorylation (Fig. 6E, S6D,E) suggesting that Akt may provide a link between RIP1 and JNK activation.
T11854 166-327 Sentence denotes Therefore, the ability of Akt and mTORC1 inhibitors to block the increase in TNFα mRNA lead us to examine their role in the activation of JNK during necroptosis.
T11853 64-165 Sentence denotes JNK is a well-established regulator of TNFα synthesis in a variety of systems [13], [14], [15], [34].
T11852 0-63 Sentence denotes Akt and mTORC1 Control the Activation of JNK during Necroptosis
T163 0-63 Sentence denotes Akt and mTORC1 Control the Activation of JNK during Necroptosis
T164 64-165 Sentence denotes JNK is a well-established regulator of TNFα synthesis in a variety of systems [13], [14], [15], [34].
T165 166-327 Sentence denotes Therefore, the ability of Akt and mTORC1 inhibitors to block the increase in TNFα mRNA lead us to examine their role in the activation of JNK during necroptosis.
T166 328-568 Sentence denotes Knockdown of Akt isoforms Akt1 and Akt2 or inhibition of Akt prominently suppressed the necroptosis dependent increase in JNK and c-Jun phosphorylation (Fig. 6E, S6D,E) suggesting that Akt may provide a link between RIP1 and JNK activation.
T167 569-722 Sentence denotes Importantly, inhibition of Akt only inhibited the delayed, but not the early, increase in bFGF/zVAD.fmk induced JNK and c-Jun phosphorylation (Fig. S6F).
T168 723-900 Sentence denotes Knockdown of mTOR, rapamycin and the p70S6K inhibitor PF-4708671 also attenuated the necroptosis-associated increase in JNK and c-Jun phosphorylation (Fig. 6F, S6E,G, Fig. S5D).
T169 901-1075 Sentence denotes Overall, these data suggested that the Akt-mTORC1-S6K axis, acting downstream from RIP1 kinase, is required for the increase in JNK activity during necroptosis in L929 cells.

simple1

Id Subject Object Predicate Lexical cue
T11943 984-988 Protein denotes RIP1
T11942 951-954 Protein denotes S6K
T11941 851-856 Protein denotes c-Jun
T11940 760-766 Protein denotes p70S6K
T11939 689-694 Protein denotes c-Jun
T11938 659-663 Protein denotes bFGF
T11937 544-548 Protein denotes RIP1
T11936 458-463 Protein denotes c-Jun
T11935 363-367 Protein denotes Akt2
T11934 354-358 Protein denotes Akt1
T11933 243-247 Protein denotes TNFα
T11932 103-107 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12181 793-803 Negative_regulation denotes attenuated
T12180 857-872 Phosphorylation denotes phosphorylation
T12179 831-839 Positive_regulation denotes increase
T12178 723-732 Negative_regulation denotes Knockdown
T12177 619-626 Negative_regulation denotes delayed
T12176 605-614 Negative_regulation denotes inhibited
T12175 647-655 Positive_regulation denotes increase
T12174 673-680 Positive_regulation denotes induced
T12173 695-710 Phosphorylation denotes phosphorylation
T12172 328-337 Negative_regulation denotes Knockdown
T12171 557-567 Positive_regulation denotes activation
T12170 401-411 Negative_regulation denotes suppressed
T12169 371-381 Negative_regulation denotes inhibition
T12168 464-479 Phosphorylation denotes phosphorylation
T12167 221-226 Negative_regulation denotes block
T12166 231-239 Positive_regulation denotes increase
T12165 90-99 Regulation denotes regulator
T12164 108-117 Gene_expression denotes synthesis
T12163 984-988 Protein denotes RIP1
T12162 951-954 Protein denotes S6K
T12161 760-766 Protein denotes p70S6K
T12160 851-856 Protein denotes c-Jun
T12159 689-694 Protein denotes c-Jun
T12158 659-663 Protein denotes bFGF
T12157 544-548 Protein denotes RIP1
T12156 458-463 Protein denotes c-Jun
T12155 363-367 Protein denotes Akt2
T12154 354-358 Protein denotes Akt1
T12153 243-247 Protein denotes TNFα
T12152 103-107 Protein denotes TNFα
R8007 T12152 T12164 themeOf TNFα,synthesis
R8008 T12153 T12166 themeOf TNFα,increase
R8009 T12154 T12169 themeOf Akt1,inhibition
R8010 T12154 T12172 themeOf Akt1,Knockdown
R8011 T12155 T12169 themeOf Akt2,inhibition
R8012 T12155 T12172 themeOf Akt2,Knockdown
R8013 T12156 T12168 themeOf c-Jun,phosphorylation
R8014 T12157 T12171 themeOf RIP1,activation
R8015 T12158 T12175 themeOf bFGF,increase
R8016 T12159 T12173 themeOf c-Jun,phosphorylation
R8017 T12160 T12180 themeOf c-Jun,phosphorylation
R8018 T12161 T12178 themeOf p70S6K,Knockdown
R8019 T12164 T12165 themeOf synthesis,regulator
R8020 T12166 T12167 themeOf increase,block
R8021 T12168 T12170 themeOf phosphorylation,suppressed
R8022 T12173 T12174 themeOf phosphorylation,induced
R8023 T12175 T12177 themeOf increase,delayed
R8024 T12175 T12176 themeOf increase,inhibited
R8025 T12179 T12181 themeOf increase,attenuated
R8026 T12180 T12179 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T12494 857-872 Phosphorylation denotes phosphorylation
T12493 793-803 Negative_regulation denotes attenuated
T12492 723-732 Negative_regulation denotes Knockdown
T12491 831-839 Positive_regulation denotes increase
T12490 647-655 Positive_regulation denotes increase
T12489 605-614 Negative_regulation denotes inhibited
T12488 673-680 Positive_regulation denotes induced
T12487 695-710 Phosphorylation denotes phosphorylation
T12486 557-567 Positive_regulation denotes activation
T12485 328-337 Negative_regulation denotes Knockdown
T12484 371-381 Negative_regulation denotes inhibition
T12483 464-479 Phosphorylation denotes phosphorylation
T12482 401-411 Negative_regulation denotes suppressed
T12481 231-239 Positive_regulation denotes increase
T12480 90-99 Regulation denotes regulator
T12479 108-117 Gene_expression denotes synthesis
T12478 984-988 Protein denotes RIP1
T12477 951-954 Protein denotes S6K
T12476 760-766 Protein denotes p70S6K
T12475 851-856 Protein denotes c-Jun
T12474 689-694 Protein denotes c-Jun
T12473 659-663 Protein denotes bFGF
T12472 544-548 Protein denotes RIP1
T12471 458-463 Protein denotes c-Jun
T12470 363-367 Protein denotes Akt2
T12469 354-358 Protein denotes Akt1
T12468 243-247 Protein denotes TNFα
T12467 103-107 Protein denotes TNFα
R8272 T12467 T12479 themeOf TNFα,synthesis
R8273 T12468 T12481 themeOf TNFα,increase
R8274 T12469 T12484 themeOf Akt1,inhibition
R8275 T12469 T12485 themeOf Akt1,Knockdown
R8276 T12470 T12485 themeOf Akt2,Knockdown
R8277 T12471 T12483 themeOf c-Jun,phosphorylation
R8278 T12472 T12486 themeOf RIP1,activation
R8279 T12473 T12490 themeOf bFGF,increase
R8280 T12474 T12487 themeOf c-Jun,phosphorylation
R8281 T12475 T12494 themeOf c-Jun,phosphorylation
R8282 T12476 T12492 themeOf p70S6K,Knockdown
R8283 T12479 T12480 themeOf synthesis,regulator
R8284 T12483 T12482 themeOf phosphorylation,suppressed
R8285 T12483 T12482 themeOf phosphorylation,suppressed
R8286 T12483 T12482 themeOf phosphorylation,suppressed
R8287 T12484 T12485 themeOf inhibition,Knockdown
R8288 T12485 T12482 causeOf Knockdown,suppressed
R8289 T12485 T12482 causeOf Knockdown,suppressed
R8290 T12485 T12482 causeOf Knockdown,suppressed
R8291 T12487 T12488 themeOf phosphorylation,induced
R8292 T12490 T12489 themeOf increase,inhibited
R8293 T12491 T12493 themeOf increase,attenuated
R8294 T12494 T12491 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T12448 961-967 Positive_regulation denotes acting
T12447 793-803 Negative_regulation denotes attenuated
T12446 831-839 Positive_regulation denotes increase
T12445 857-872 Phosphorylation denotes phosphorylation
T12444 767-776 Negative_regulation denotes inhibitor
T12443 723-732 Negative_regulation denotes Knockdown
T12442 673-680 Positive_regulation denotes induced
T12441 619-626 Negative_regulation denotes delayed
T12440 695-710 Phosphorylation denotes phosphorylation
T12439 647-655 Positive_regulation denotes increase
T12438 428-437 Regulation denotes dependent
T12437 438-446 Positive_regulation denotes increase
T12436 401-411 Negative_regulation denotes suppressed
T12435 531-535 Binding denotes link
T12434 464-479 Phosphorylation denotes phosphorylation
T12433 328-337 Negative_regulation denotes Knockdown
T12432 231-239 Positive_regulation denotes increase
T12427 760-766 Protein denotes p70S6K
T12426 851-856 Protein denotes c-Jun
T12425 689-694 Protein denotes c-Jun
T12424 659-663 Protein denotes bFGF
T12423 544-548 Protein denotes RIP1
T12422 458-463 Protein denotes c-Jun
T12421 363-367 Protein denotes Akt2
T12420 354-358 Protein denotes Akt1
T12419 243-247 Protein denotes TNFα
T12418 103-107 Protein denotes TNFα
T12431 90-99 Regulation denotes regulator
T12430 108-117 Gene_expression denotes synthesis
T12429 984-988 Protein denotes RIP1
T12428 951-954 Protein denotes S6K
R8233 T12418 T12430 themeOf TNFα,synthesis
R8234 T12419 T12432 themeOf TNFα,increase
R8235 T12420 T12433 themeOf Akt1,Knockdown
R8236 T12421 T12433 themeOf Akt2,Knockdown
R8237 T12422 T12434 themeOf c-Jun,phosphorylation
R8238 T12423 T12435 themeOf RIP1,link
R8239 T12424 T12439 themeOf bFGF,increase
R8240 T12425 T12440 themeOf c-Jun,phosphorylation
R8241 T12426 T12445 themeOf c-Jun,phosphorylation
R8242 T12427 T12443 themeOf p70S6K,Knockdown
R8243 T12427 T12444 themeOf p70S6K,inhibitor
R8244 T12428 T12448 themeOf S6K,acting
R8245 T12430 T12431 themeOf synthesis,regulator
R8246 T12433 T12436 causeOf Knockdown,suppressed
R8247 T12433 T12436 causeOf Knockdown,suppressed
R8248 T12433 T12436 causeOf Knockdown,suppressed
R8249 T12433 T12436 causeOf Knockdown,suppressed
R8250 T12434 T12436 themeOf phosphorylation,suppressed
R8251 T12434 T12437 themeOf phosphorylation,increase
R8252 T12434 T12436 themeOf phosphorylation,suppressed
R8253 T12437 T12438 themeOf increase,dependent
R8254 T12437 T12436 themeOf increase,suppressed
R8255 T12437 T12436 themeOf increase,suppressed
R8256 T12438 T12437 themeOf dependent,increase
R8257 T12439 T12441 themeOf increase,delayed
R8258 T12440 T12442 themeOf phosphorylation,induced
R8259 T12441 T12439 themeOf delayed,increase
R8260 T12443 T12447 causeOf Knockdown,attenuated
R8261 T12443 T12447 causeOf Knockdown,attenuated
R8262 T12444 T12443 themeOf inhibitor,Knockdown
R8263 T12445 T12446 themeOf phosphorylation,increase
R8264 T12446 T12447 themeOf increase,attenuated
R8265 T12446 T12447 themeOf increase,attenuated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12670 371-388 Negative_regulation denotes inhibition of Akt
T12669 553-567 Positive_regulation denotes JNK activation
T12668 286-326 Positive_regulation denotes the activation of JNK during necroptosis
T12667 582-599 Negative_regulation denotes inhibition of Akt
T12666 221-252 Negative_regulation denotes block the increase in TNFα mRNA
T12665 1013-1074 Positive_regulation denotes the increase in JNK activity during necroptosis in L929 cells
T12664 689-710 Phosphorylation denotes c-Jun phosphorylation
T12663 458-479 Phosphorylation denotes c-Jun phosphorylation
T12662 851-872 Phosphorylation denotes c-Jun phosphorylation
T12661 23-63 Positive_regulation denotes the Activation of JNK during Necroptosis
T12660 544-548 Protein denotes RIP1
T12659 760-766 Protein denotes p70S6K
T12658 0-3 Protein denotes Akt
T12657 8-14 Entity denotes mTORC1
T12656 874-877 Protein denotes Fig
T12655 513-516 Protein denotes Akt
T12654 681-684 Protein denotes JNK
T12653 354-358 Protein denotes Akt1
T12652 363-367 Protein denotes Akt2
T12651 756-787 Entity denotes the p70S6K inhibitor PF-4708671
T12650 984-996 Protein denotes RIP1 kinase,
T12649 984-988 Protein denotes RIP1
T12648 301-307 Protein denotes of JNK
T12647 450-453 Protein denotes JNK
T12646 843-846 Protein denotes JNK
T12645 189-195 Protein denotes of Akt
T12644 887-893 Protein denotes G, Fig
T12643 736-740 Protein denotes mTOR
T12642 553-556 Protein denotes JNK
T12641 38-44 Protein denotes of JNK
T12640 382-388 Protein denotes of Akt
T12639 664-672 Entity denotes zVAD.fmk
T12638 659-663 Protein denotes bFGF
T12637 207-217 Entity denotes inhibitors
T12636 756-787 Entity denotes the p70S6K inhibitor PF-4708671
T12635 338-344 Protein denotes of Akt
T12634 1029-1032 Protein denotes JNK
T12633 103-117 Protein denotes TNFα synthesis
T12632 689-694 Protein denotes c-Jun
T12631 243-247 Protein denotes TNFα
T12630 64-67 Protein denotes JNK
T12629 742-751 Entity denotes rapamycin
T12628 458-463 Protein denotes c-Jun
T12627 851-856 Protein denotes c-Jun
T12626 240-252 Protein denotes in TNFα mRNA
T12625 593-599 Protein denotes of Akt
R8381 T12625 T12667 themeOf of Akt,inhibition of Akt
R8382 T12627 T12662 themeOf c-Jun,c-Jun phosphorylation
R8383 T12628 T12663 themeOf c-Jun,c-Jun phosphorylation
R8384 T12632 T12664 themeOf c-Jun,c-Jun phosphorylation
R8385 T12634 T12665 themeOf JNK,the increase in JNK activity during necroptosis in L929 cells
R8386 T12640 T12670 themeOf of Akt,inhibition of Akt
R8387 T12641 T12661 themeOf of JNK,the Activation of JNK during Necroptosis
R8388 T12642 T12669 themeOf JNK,JNK activation
R8389 T12648 T12668 themeOf of JNK,the activation of JNK during necroptosis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12407 1013-1016 DT denotes the
T12406 1009-1012 IN denotes for
T12405 1000-1008 VBN denotes required
T12404 997-999 VBZ denotes is
T12403 995-996 , denotes ,
T12402 989-995 NN denotes kinase
T12401 984-988 CD denotes RIP1
T12400 979-983 IN denotes from
T12399 968-978 JJ denotes downstream
T12398 961-967 VBG denotes acting
T12397 959-960 , denotes ,
T12396 955-959 NN denotes axis
T12395 940-954 JJ denotes Akt-mTORC1-S6K
T12394 936-939 DT denotes the
T12393 931-935 IN denotes that
T12392 921-930 VBD denotes suggested
T12391 916-920 NNS denotes data
T12390 910-915 DT denotes these
T12389 908-909 , denotes ,
T12388 901-908 RB denotes Overall
T12387 899-900 . denotes .
T12386 898-899 -RRB- denotes )
T12385 895-898 CD denotes S5D
T12384 893-894 . denotes .
T12383 890-893 NNP denotes Fig
T12364 777-787 NN denotes PF-4708671
T12363 767-776 NN denotes inhibitor
T12362 760-766 JJ denotes p70S6K
T12361 756-759 DT denotes the
T12360 752-755 CC denotes and
T12359 742-751 NN denotes rapamycin
T12358 740-741 , denotes ,
T12357 736-740 NNP denotes mTOR
T12356 733-735 IN denotes of
T12355 723-732 NNP denotes Knockdown
T12354 721-722 . denotes .
T12353 720-721 -RRB- denotes )
T12352 717-720 CD denotes S6F
T12351 715-716 . denotes .
T12248 308-314 IN denotes during
T12247 304-307 NNP denotes JNK
T12246 301-303 IN denotes of
T12245 290-300 NN denotes activation
T12244 286-289 DT denotes the
T12243 283-285 IN denotes in
T12242 278-282 NN denotes role
T12241 272-277 PRP$ denotes their
T12240 264-271 VB denotes examine
T12239 261-263 TO denotes to
T12238 258-260 PRP denotes us
T12237 253-257 VBP denotes lead
T12236 248-252 NNP denotes mRNA
T12235 243-247 NNP denotes TNFα
T12234 240-242 IN denotes in
T12233 231-239 NN denotes increase
T12232 227-230 DT denotes the
T12231 221-226 VB denotes block
T12230 218-220 TO denotes to
T12229 207-217 NNS denotes inhibitors
T12228 200-206 NNP denotes mTORC1
T12227 196-199 CC denotes and
T12226 192-195 NNP denotes Akt
T12225 189-191 IN denotes of
T12224 181-188 NN denotes ability
T12223 177-180 DT denotes the
T12222 175-176 , denotes ,
T12221 166-175 RB denotes Therefore
T12220 164-165 . denotes .
T12219 163-164 NNP denotes ]
T12218 161-163 CD denotes 34
T12217 160-161 NNP denotes [
T12216 158-159 , denotes ,
T12215 157-158 NNP denotes ]
T12214 155-157 CD denotes 15
T12213 154-155 NNP denotes [
T12212 152-153 , denotes ,
T12211 151-152 NNP denotes ]
T12210 149-151 CD denotes 14
T12209 148-149 NNP denotes [
T12208 146-147 , denotes ,
T12207 145-146 NNP denotes ]
T12206 143-145 CD denotes 13
T12205 142-143 NNP denotes [
T12204 134-141 NNS denotes systems
T12203 131-133 IN denotes of
T12382 888-889 , denotes ,
T12381 887-888 NNP denotes G
T12380 886-887 , denotes ,
T12379 883-886 NNP denotes S6E
T12378 881-882 , denotes ,
T12377 879-881 NNP denotes 6F
T12376 874-878 NNP denotes Fig.
T12375 873-874 -LRB- denotes (
T12374 857-872 NN denotes phosphorylation
T12373 851-856 JJ denotes c-Jun
T12372 847-850 CC denotes and
T12371 843-846 NNP denotes JNK
T12370 840-842 IN denotes in
T12369 831-839 NN denotes increase
T12368 808-830 JJ denotes necroptosis-associated
T12367 804-807 DT denotes the
T12366 793-803 VBD denotes attenuated
T12365 788-792 RB denotes also
T12202 123-130 NN denotes variety
T12201 121-122 DT denotes a
T12200 118-120 IN denotes in
T12199 108-117 NN denotes synthesis
T12198 103-107 NNP denotes TNFα
T12197 100-102 IN denotes of
T12196 90-99 NN denotes regulator
T12195 73-89 JJ denotes well-established
T12194 71-72 DT denotes a
T12193 68-70 VBZ denotes is
T12192 64-67 NNP denotes JNK
T12191 52-63 NNP denotes Necroptosis
T12190 45-51 IN denotes during
T12189 41-44 NNP denotes JNK
T12188 38-40 IN denotes of
T12187 27-37 NNP denotes Activation
T12186 23-26 DT denotes the
T12185 15-22 NNP denotes Control
T12184 8-14 NNP denotes mTORC1
T12183 4-7 CC denotes and
T12182 0-3 NNP denotes Akt
T12307 490-493 NNP denotes S6D
T12306 488-489 , denotes ,
T12305 486-488 NNP denotes 6E
T12304 481-485 NNP denotes Fig.
T12303 480-481 -LRB- denotes (
T12302 464-479 NN denotes phosphorylation
T12301 458-463 JJ denotes c-Jun
T12300 454-457 CC denotes and
T12299 450-453 NNP denotes JNK
T12298 447-449 IN denotes in
T12297 438-446 NN denotes increase
T12296 428-437 JJ denotes dependent
T12295 416-427 NN denotes necroptosis
T12294 412-415 DT denotes the
T12293 401-411 VBD denotes suppressed
T12292 389-400 RB denotes prominently
T12291 385-388 NNP denotes Akt
T12290 382-384 IN denotes of
T12289 371-381 NN denotes inhibition
T12288 368-370 CC denotes or
T12287 363-367 NNP denotes Akt2
T12286 359-362 CC denotes and
T12285 354-358 NNP denotes Akt1
T12284 345-353 VBZ denotes isoforms
T12283 341-344 NNP denotes Akt
T12282 338-340 IN denotes of
T12281 328-337 NNP denotes Knockdown
T12280 326-327 . denotes .
T12279 315-326 NN denotes necroptosis
T12329 600-604 RB denotes only
T12328 596-599 NNP denotes Akt
T12327 593-595 IN denotes of
T12326 582-592 NN denotes inhibition
T12325 580-581 , denotes ,
T12324 569-580 RB denotes Importantly
T12323 567-568 . denotes .
T12322 557-567 NN denotes activation
T12321 553-556 NNP denotes JNK
T12320 549-552 CC denotes and
T12319 544-548 CD denotes RIP1
T12318 536-543 IN denotes between
T12317 531-535 NN denotes link
T12316 529-530 DT denotes a
T12315 521-528 VB denotes provide
T12314 517-520 MD denotes may
T12313 513-516 NNP denotes Akt
T12312 508-512 IN denotes that
T12311 497-507 VBG denotes suggesting
T12310 495-496 -RRB- denotes )
T12309 494-495 NNP denotes E
T12308 493-494 , denotes ,
T12350 712-715 NNP denotes Fig
T12349 711-712 -LRB- denotes (
T12348 695-710 NN denotes phosphorylation
T12347 689-694 JJ denotes c-Jun
T12346 685-688 CC denotes and
T12345 681-684 NNP denotes JNK
T12344 673-680 VBD denotes induced
T12343 669-672 NN denotes fmk
T12342 668-669 . denotes .
T12341 659-668 NNP denotes bFGF/zVAD
T12340 656-658 IN denotes in
T12339 647-655 NN denotes increase
T12338 645-646 , denotes ,
T12337 640-645 JJ denotes early
T12336 636-639 DT denotes the
T12335 632-635 RB denotes not
T12334 628-631 CC denotes but
T12333 626-627 , denotes ,
T12332 619-626 VBN denotes delayed
T12331 615-618 DT denotes the
T12330 605-614 VBD denotes inhibited
T12417 1074-1075 . denotes .
T12416 1069-1074 NNS denotes cells
T12415 1064-1068 CD denotes L929
T12414 1061-1063 IN denotes in
T12413 1049-1060 NN denotes necroptosis
T12412 1042-1048 IN denotes during
T12411 1033-1041 NN denotes activity
T12410 1029-1032 NNP denotes JNK
T12409 1026-1028 IN denotes in
T12408 1017-1025 NN denotes increase
R8027 T12182 T12193 nsubj Akt,is
R8028 T12183 T12182 cc and,Akt
R8029 T12184 T12185 compound mTORC1,Control
R8030 T12185 T12182 conj Control,Akt
R8031 T12186 T12187 det the,Activation
R8032 T12187 T12182 appos Activation,Akt
R8033 T12188 T12187 prep of,Activation
R8034 T12189 T12188 pobj JNK,of
R8035 T12190 T12187 prep during,Activation
R8036 T12191 T12192 compound Necroptosis,JNK
R8037 T12192 T12190 pobj JNK,during
R8038 T12193 T12193 ROOT is,is
R8039 T12194 T12196 det a,regulator
R8040 T12195 T12196 amod well-established,regulator
R8041 T12196 T12193 attr regulator,is
R8042 T12197 T12196 prep of,regulator
R8043 T12198 T12199 compound TNFα,synthesis
R8044 T12199 T12197 pobj synthesis,of
R8045 T12200 T12196 prep in,regulator
R8046 T12201 T12202 det a,variety
R8047 T12202 T12200 pobj variety,in
R8048 T12203 T12202 prep of,variety
R8049 T12204 T12203 pobj systems,of
R8050 T12205 T12196 appos [,regulator
R8051 T12206 T12207 nummod 13,]
R8052 T12207 T12196 appos ],regulator
R8053 T12208 T12207 punct ",",]
R8054 T12209 T12207 conj [,]
R8055 T12210 T12211 nummod 14,]
R8056 T12211 T12207 conj ],]
R8057 T12212 T12211 punct ",",]
R8058 T12213 T12211 conj [,]
R8059 T12214 T12215 nummod 15,]
R8060 T12215 T12211 conj ],]
R8061 T12216 T12215 punct ",",]
R8062 T12217 T12215 conj [,]
R8063 T12218 T12219 nummod 34,]
R8064 T12219 T12215 conj ],]
R8065 T12220 T12193 punct .,is
R8066 T12221 T12237 advmod Therefore,lead
R8067 T12222 T12237 punct ",",lead
R8068 T12223 T12224 det the,ability
R8069 T12224 T12237 nsubj ability,lead
R8070 T12225 T12224 prep of,ability
R8071 T12226 T12225 pobj Akt,of
R8072 T12227 T12226 cc and,Akt
R8073 T12228 T12226 conj mTORC1,Akt
R8074 T12229 T12224 conj inhibitors,ability
R8075 T12230 T12231 aux to,block
R8076 T12231 T12224 acl block,ability
R8077 T12232 T12233 det the,increase
R8078 T12233 T12231 dobj increase,block
R8079 T12234 T12233 prep in,increase
R8080 T12235 T12236 compound TNFα,mRNA
R8081 T12236 T12237 nsubj mRNA,lead
R8082 T12237 T12237 ROOT lead,lead
R8083 T12238 T12237 dobj us,lead
R8084 T12239 T12240 aux to,examine
R8085 T12240 T12237 xcomp examine,lead
R8086 T12241 T12242 poss their,role
R8087 T12242 T12240 dobj role,examine
R8088 T12243 T12242 prep in,role
R8089 T12244 T12245 det the,activation
R8090 T12245 T12243 pobj activation,in
R8091 T12246 T12245 prep of,activation
R8092 T12247 T12246 pobj JNK,of
R8093 T12248 T12240 prep during,examine
R8094 T12279 T12248 pobj necroptosis,during
R8095 T12280 T12237 punct .,lead
R8096 T12281 T12284 nsubj Knockdown,isoforms
R8097 T12282 T12281 prep of,Knockdown
R8098 T12283 T12282 pobj Akt,of
R8099 T12284 T12284 ROOT isoforms,isoforms
R8100 T12285 T12293 nsubj Akt1,suppressed
R8101 T12286 T12285 cc and,Akt1
R8102 T12287 T12285 conj Akt2,Akt1
R8103 T12288 T12287 cc or,Akt2
R8104 T12289 T12287 conj inhibition,Akt2
R8105 T12290 T12289 prep of,inhibition
R8106 T12291 T12290 pobj Akt,of
R8107 T12292 T12293 advmod prominently,suppressed
R8108 T12293 T12284 ccomp suppressed,isoforms
R8109 T12294 T12297 det the,increase
R8110 T12295 T12297 amod necroptosis,increase
R8111 T12296 T12297 amod dependent,increase
R8112 T12297 T12293 dobj increase,suppressed
R8113 T12298 T12297 prep in,increase
R8114 T12299 T12302 nmod JNK,phosphorylation
R8115 T12300 T12299 cc and,JNK
R8116 T12301 T12302 amod c-Jun,phosphorylation
R8117 T12302 T12298 pobj phosphorylation,in
R8118 T12303 T12302 punct (,phosphorylation
R8119 T12304 T12305 compound Fig.,6E
R8120 T12305 T12302 appos 6E,phosphorylation
R8121 T12306 T12305 punct ",",6E
R8122 T12307 T12309 advmod S6D,E
R8123 T12308 T12307 punct ",",S6D
R8124 T12309 T12305 appos E,6E
R8125 T12310 T12302 punct ),phosphorylation
R8126 T12311 T12293 advcl suggesting,suppressed
R8127 T12312 T12315 mark that,provide
R8128 T12313 T12315 nsubj Akt,provide
R8129 T12314 T12315 aux may,provide
R8130 T12315 T12311 ccomp provide,suggesting
R8131 T12316 T12317 det a,link
R8132 T12317 T12315 dobj link,provide
R8133 T12318 T12317 prep between,link
R8134 T12319 T12318 pobj RIP1,between
R8135 T12320 T12319 cc and,RIP1
R8136 T12321 T12322 compound JNK,activation
R8137 T12322 T12319 conj activation,RIP1
R8138 T12323 T12284 punct .,isoforms
R8139 T12324 T12330 advmod Importantly,inhibited
R8140 T12325 T12330 punct ",",inhibited
R8141 T12326 T12330 nsubj inhibition,inhibited
R8142 T12327 T12326 prep of,inhibition
R8143 T12328 T12327 pobj Akt,of
R8144 T12329 T12330 advmod only,inhibited
R8145 T12330 T12330 ROOT inhibited,inhibited
R8146 T12331 T12332 det the,delayed
R8147 T12332 T12330 dobj delayed,inhibited
R8148 T12333 T12332 punct ",",delayed
R8149 T12334 T12332 cc but,delayed
R8150 T12335 T12339 neg not,increase
R8151 T12336 T12339 det the,increase
R8152 T12337 T12339 amod early,increase
R8153 T12338 T12339 punct ",",increase
R8154 T12339 T12330 npadvmod increase,inhibited
R8155 T12340 T12339 prep in,increase
R8156 T12341 T12340 pobj bFGF/zVAD,in
R8157 T12342 T12330 punct .,inhibited
R8158 T12343 T12344 nsubj fmk,induced
R8159 T12344 T12344 ROOT induced,induced
R8160 T12345 T12344 dobj JNK,induced
R8161 T12346 T12345 cc and,JNK
R8162 T12347 T12348 amod c-Jun,phosphorylation
R8163 T12348 T12345 conj phosphorylation,JNK
R8164 T12349 T12350 punct (,Fig
R8165 T12350 T12348 appos Fig,phosphorylation
R8166 T12351 T12344 punct .,induced
R8167 T12352 T12352 ROOT S6F,S6F
R8168 T12353 T12352 punct ),S6F
R8169 T12354 T12352 punct .,S6F
R8170 T12355 T12366 nsubj Knockdown,attenuated
R8171 T12356 T12355 prep of,Knockdown
R8172 T12357 T12356 pobj mTOR,of
R8173 T12358 T12357 punct ",",mTOR
R8174 T12359 T12355 conj rapamycin,Knockdown
R8175 T12360 T12359 cc and,rapamycin
R8176 T12361 T12363 det the,inhibitor
R8177 T12362 T12363 amod p70S6K,inhibitor
R8178 T12363 T12364 compound inhibitor,PF-4708671
R8179 T12364 T12359 conj PF-4708671,rapamycin
R8180 T12365 T12366 advmod also,attenuated
R8181 T12366 T12366 ROOT attenuated,attenuated
R8182 T12367 T12369 det the,increase
R8183 T12368 T12369 amod necroptosis-associated,increase
R8184 T12369 T12366 dobj increase,attenuated
R8185 T12370 T12369 prep in,increase
R8186 T12371 T12374 nmod JNK,phosphorylation
R8187 T12372 T12371 cc and,JNK
R8188 T12373 T12374 amod c-Jun,phosphorylation
R8189 T12374 T12369 appos phosphorylation,increase
R8190 T12375 T12374 punct (,phosphorylation
R8191 T12376 T12377 compound Fig.,6F
R8192 T12377 T12374 appos 6F,phosphorylation
R8193 T12378 T12377 punct ",",6F
R8194 T12379 T12377 conj S6E,6F
R8195 T12380 T12379 punct ",",S6E
R8196 T12381 T12379 conj G,S6E
R8197 T12382 T12381 punct ",",G
R8198 T12383 T12381 conj Fig,G
R8199 T12384 T12366 punct .,attenuated
R8200 T12385 T12385 ROOT S5D,S5D
R8201 T12386 T12385 punct ),S5D
R8202 T12387 T12385 punct .,S5D
R8203 T12388 T12392 advmod Overall,suggested
R8204 T12389 T12392 punct ",",suggested
R8205 T12390 T12391 det these,data
R8206 T12391 T12392 nsubj data,suggested
R8207 T12392 T12392 ROOT suggested,suggested
R8208 T12393 T12405 mark that,required
R8209 T12394 T12396 det the,axis
R8210 T12395 T12396 amod Akt-mTORC1-S6K,axis
R8211 T12396 T12405 nsubjpass axis,required
R8212 T12397 T12396 punct ",",axis
R8213 T12398 T12396 conj acting,axis
R8214 T12399 T12398 advmod downstream,acting
R8215 T12400 T12398 prep from,acting
R8216 T12401 T12402 nummod RIP1,kinase
R8217 T12402 T12400 pobj kinase,from
R8218 T12403 T12405 punct ",",required
R8219 T12404 T12405 auxpass is,required
R8220 T12405 T12392 ccomp required,suggested
R8221 T12406 T12405 prep for,required
R8222 T12407 T12408 det the,increase
R8223 T12408 T12406 pobj increase,for
R8224 T12409 T12408 prep in,increase
R8225 T12410 T12411 compound JNK,activity
R8226 T12411 T12409 pobj activity,in
R8227 T12412 T12408 prep during,increase
R8228 T12413 T12412 pobj necroptosis,during
R8229 T12414 T12408 prep in,increase
R8230 T12415 T12416 nummod L929,cells
R8231 T12416 T12414 pobj cells,in
R8232 T12417 T12392 punct .,suggested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12559 1000-1008 Positive_regulation denotes required
T12558 1017-1025 Positive_regulation denotes increase
T12557 1029-1032 Protein denotes JNK
T12556 984-995 Protein denotes RIP1 kinase
T12555 951-954 Protein denotes S6K
T12554 944-950 Protein denotes mTORC1
T12553 940-943 Protein denotes Akt
T12552 793-803 Negative_regulation denotes attenuated
T12551 793-803 Negative_regulation denotes attenuated
T12550 831-839 Positive_regulation denotes increase
T12549 831-839 Positive_regulation denotes increase
T12548 857-872 Phosphorylation denotes phosphorylation
T12547 857-872 Phosphorylation denotes phosphorylation
T12546 767-776 Negative_regulation denotes inhibitor
T12545 767-776 Negative_regulation denotes inhibitor
T12544 723-732 Negative_regulation denotes Knockdown
T12543 851-856 Protein denotes c-Jun
T12542 843-846 Protein denotes JNK
T12541 760-766 Protein denotes p70S6K
T12540 736-740 Protein denotes mTOR
T12539 673-680 Positive_regulation denotes induced
T12538 673-680 Positive_regulation denotes induced
T12537 695-710 Phosphorylation denotes phosphorylation
T12536 695-710 Phosphorylation denotes phosphorylation
T12535 647-655 Positive_regulation denotes increase
T12534 582-592 Negative_regulation denotes inhibition
T12533 717-720 Protein denotes S6F
T12532 712-715 Protein denotes Fig
T12531 689-694 Protein denotes c-Jun
T12530 681-684 Protein denotes JNK
T12529 659-672 Protein denotes bFGF/zVAD.fmk
T12528 596-599 Protein denotes Akt
T12527 438-446 Positive_regulation denotes increase
T12526 557-567 Positive_regulation denotes activation
T12525 464-479 Phosphorylation denotes phosphorylation
T12524 553-556 Protein denotes JNK
T12523 544-548 Protein denotes RIP1
T12522 513-516 Protein denotes Akt
T12521 458-463 Protein denotes c-Jun
T12520 450-453 Protein denotes JNK
T12519 385-388 Protein denotes Akt
T12518 363-367 Protein denotes Akt2
T12517 354-358 Protein denotes Akt1
T12516 341-344 Protein denotes Akt
T12515 278-282 Regulation denotes role
T12514 221-226 Negative_regulation denotes block
T12513 290-300 Positive_regulation denotes activation
T12512 231-239 Positive_regulation denotes increase
T12511 304-307 Protein denotes JNK
T12510 243-252 Protein denotes TNFα mRNA
T12509 200-206 Protein denotes mTORC1
T12508 192-195 Protein denotes Akt
T12507 90-99 Regulation denotes regulator
T12506 108-117 Gene_expression denotes synthesis
T12505 103-107 Protein denotes TNFα
T12504 64-67 Protein denotes JNK
T12503 15-22 Regulation denotes Control
T12502 15-22 Regulation denotes Control
T12501 15-22 Regulation denotes Control
T12500 15-22 Regulation denotes Control
T12499 52-63 Entity denotes Necroptosis
T12498 27-37 Positive_regulation denotes Activation
T12497 41-44 Protein denotes JNK
T12496 8-14 Protein denotes mTORC1
T12495 0-3 Protein denotes Akt
R8295 T12495 T12500 causeOf Akt,Control
R8296 T12495 T12501 causeOf Akt,Control
R8297 T12496 T12502 causeOf mTORC1,Control
R8298 T12496 T12503 causeOf mTORC1,Control
R8299 T12497 T12498 themeOf JNK,Activation
R8300 T12498 T12500 themeOf Activation,Control
R8301 T12498 T12501 themeOf Activation,Control
R8302 T12498 T12502 themeOf Activation,Control
R8303 T12498 T12503 themeOf Activation,Control
R8304 T12499 T12501 Site Necroptosis,Control
R8305 T12499 T12503 Site Necroptosis,Control
R8306 T12504 T12507 causeOf JNK,regulator
R8307 T12505 T12506 themeOf TNFα,synthesis
R8308 T12506 T12507 themeOf synthesis,regulator
R8309 T12510 T12512 themeOf TNFα mRNA,increase
R8310 T12511 T12513 themeOf JNK,activation
R8311 T12512 T12514 themeOf increase,block
R8312 T12513 T12515 themeOf activation,role
R8313 T12521 T12525 themeOf c-Jun,phosphorylation
R8314 T12524 T12526 themeOf JNK,activation
R8315 T12525 T12527 themeOf phosphorylation,increase
R8316 T12528 T12534 themeOf Akt,inhibition
R8317 T12529 T12535 themeOf bFGF/zVAD.fmk,increase
R8318 T12530 T12536 themeOf JNK,phosphorylation
R8319 T12531 T12537 themeOf c-Jun,phosphorylation
R8320 T12533 T12538 causeOf S6F,induced
R8321 T12533 T12539 causeOf S6F,induced
R8322 T12536 T12538 themeOf phosphorylation,induced
R8323 T12537 T12539 themeOf phosphorylation,induced
R8324 T12540 T12544 themeOf mTOR,Knockdown
R8325 T12540 T12545 themeOf mTOR,inhibitor
R8326 T12541 T12546 themeOf p70S6K,inhibitor
R8327 T12542 T12547 themeOf JNK,phosphorylation
R8328 T12543 T12548 themeOf c-Jun,phosphorylation
R8329 T12544 T12551 causeOf Knockdown,attenuated
R8330 T12544 T12552 causeOf Knockdown,attenuated
R8331 T12547 T12549 themeOf phosphorylation,increase
R8332 T12548 T12550 themeOf phosphorylation,increase
R8333 T12549 T12551 themeOf increase,attenuated
R8334 T12550 T12552 themeOf increase,attenuated
R8335 T12554 T12559 causeOf mTORC1,required
R8336 T12557 T12558 themeOf JNK,increase
R8337 T12558 T12559 themeOf increase,required

test3

Id Subject Object Predicate Lexical cue
T11851 984-988 Protein denotes RIP1
T11850 951-954 Protein denotes S6K
T11849 857-872 Phosphorylation denotes phosphorylation
T11848 851-856 Protein denotes c-Jun
T11847 831-839 Positive_regulation denotes increase
T11846 793-803 Negative_regulation denotes attenuated
T11845 760-766 Protein denotes p70S6K
T11844 723-732 Negative_regulation denotes Knockdown
T11843 695-710 Phosphorylation denotes phosphorylation
T11842 689-694 Protein denotes c-Jun
T11841 673-680 Positive_regulation denotes induced
T11840 659-663 Protein denotes bFGF
T11839 605-614 Negative_regulation denotes inhibited
T11838 582-592 Negative_regulation denotes inhibition
T11837 544-548 Protein denotes RIP1
T11836 464-479 Phosphorylation denotes phosphorylation
T11835 458-463 Protein denotes c-Jun
T11834 438-446 Positive_regulation denotes increase
T11833 371-381 Negative_regulation denotes inhibition
T11832 363-367 Protein denotes Akt2
T11831 354-358 Protein denotes Akt1
T11830 328-337 Negative_regulation denotes Knockdown
T11829 243-247 Protein denotes TNFα
T11828 231-239 Positive_regulation denotes increase
T11827 221-226 Negative_regulation denotes block
T11826 207-217 Negative_regulation denotes inhibitors
T11825 108-117 Gene_expression denotes synthesis
T11824 103-107 Protein denotes TNFα
T11823 984-988 Protein denotes RIP1
T11822 951-954 Protein denotes S6K
T11821 851-856 Protein denotes c-Jun
T11820 760-766 Protein denotes p70S6K
T11819 689-694 Protein denotes c-Jun
T11818 659-663 Protein denotes bFGF
T11817 544-548 Protein denotes RIP1
T11816 458-463 Protein denotes c-Jun
T11815 363-367 Protein denotes Akt2
T11814 354-358 Protein denotes Akt1
T11813 243-247 Protein denotes TNFα
T11812 103-107 Protein denotes TNFα
R7778 T11824 T11825 themeOf TNFα,synthesis
R7779 T11828 T11827 themeOf increase,block
R7780 T11829 T11828 themeOf TNFα,increase
R7781 T11831 T11830 themeOf Akt1,Knockdown
R7782 T11832 T11830 themeOf Akt2,Knockdown
R7783 T11835 T11836 themeOf c-Jun,phosphorylation
R7784 T11836 T11834 themeOf phosphorylation,increase
R7787 T11843 T11841 themeOf phosphorylation,induced
R7785 T11838 T11841 causeOf inhibition,induced
R7786 T11842 T11843 themeOf c-Jun,phosphorylation
R7788 T11844 T11846 causeOf Knockdown,attenuated
R7789 T11847 T11846 themeOf increase,attenuated
R7790 T11848 T11849 themeOf c-Jun,phosphorylation
R7791 T11849 T11847 themeOf phosphorylation,increase
R7792 T11849 T11846 themeOf phosphorylation,attenuated