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PMC:3585731 / 25094-25597 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8963 476-484 Positive_regulation denotes increase
T8962 353-363 Positive_regulation denotes stimulated
T8961 286-292 Regulation denotes effect
T8960 268-278 Negative_regulation denotes inhibitors
T8959 185-192 Negative_regulation denotes reduced
T8958 159-168 Negative_regulation denotes knockdown
T8957 153-158 Negative_regulation denotes siRNA
T8956 70-82 Positive_regulation denotes upregulation
T8955 52-62 Positive_regulation denotes contribute
T8924 488-492 Protein denotes TNFα
T8923 369-373 Protein denotes bFGF
T8922 310-314 Protein denotes TNFα
T8921 255-259 Protein denotes RIP1
T8920 193-197 Protein denotes TNFα
T8919 86-90 Protein denotes TNFα
R5812 T8919 T8956 themeOf TNFα,upregulation
R5813 T8921 T8960 themeOf RIP1,inhibitors
R5814 T8923 T8962 themeOf bFGF,stimulated
R5824 T8956 T8955 themeOf upregulation,contribute

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10143 493-502 NN denotes synthesis
T10142 488-492 NN denotes TNFα
T10141 485-487 IN denotes in
T10140 476-484 NN denotes increase
T10139 454-475 JJ denotes necroptosis-dependent
T10138 446-453 VB denotes mediate
T10137 433-445 RB denotes specifically
T10136 425-432 NN denotes kinases
T10135 419-424 DT denotes these
T10134 414-418 IN denotes that
T10133 403-413 VB denotes suggesting
T10132 401-402 -COMMA- denotes ,
T10131 400-401 -RRB- denotes )
T10130 397-400 NN denotes S6C
T10129 392-396 NNP denotes Fig.
T10128 390-391 -COMMA- denotes ,
T10127 389-390 NN denotes B
T10126 388-389 -COMMA- denotes ,
T10125 386-388 NN denotes 6A
T10124 381-385 NNP denotes Fig.
T10123 380-381 -LRB- denotes (
T10122 374-379 RB denotes alone
T10121 369-373 NN denotes bFGF
T10120 364-368 IN denotes with
T10119 353-363 VB denotes stimulated
T10118 347-352 NN denotes cells
T10117 343-346 DT denotes the
T10116 340-342 IN denotes in
T10115 337-339 CC denotes or
T10114 331-336 NN denotes cells
T10113 323-330 NN denotes control
T10112 320-322 IN denotes in
T10111 315-319 NN denotes mRNA
T10110 310-314 NN denotes TNFα
T10109 307-309 IN denotes of
T10108 300-306 NN denotes levels
T10107 296-299 DT denotes the
T10106 293-295 IN denotes on
T10105 286-292 NN denotes effect
T10104 283-285 DT denotes no
T10103 279-282 VB denotes had
T10102 268-278 NN denotes inhibitors
T10101 264-267 NN denotes Akt
T10100 260-263 CC denotes and
T10099 255-259 NN denotes RIP1
T10098 253-254 -COMMA- denotes ,
T10097 246-253 RB denotes Notably
T10096 243-244 -RRB- denotes )
T10095 242-243 NN denotes D
T10094 241-242 -COMMA- denotes ,
T10093 240-241 NN denotes C
T10092 239-240 -COMMA- denotes ,
T10091 237-239 NN denotes 6B
T10090 232-236 NN denotes Fig.
T10089 231-232 -LRB- denotes (
T10088 225-230 NN denotes cells
T10087 213-224 JJ denotes necroptotic
T10086 210-212 IN denotes in
T10085 203-209 NN denotes levels
T10084 198-202 NN denotes mRNA
T10083 193-197 NN denotes TNFα
T10082 185-192 VB denotes reduced
T10081 180-184 NN denotes mTOR
T10080 176-179 CC denotes and
T10079 172-175 NN denotes Akt
T10078 169-171 IN denotes of
T10077 159-168 NN denotes knockdown
T10076 153-158 NN denotes siRNA
T10075 149-152 CC denotes and
T10074 138-148 NN denotes inhibition
T10073 123-137 JJ denotes small-molecule
T10072 118-122 DT denotes both
T10071 115-117 IN denotes as
T10070 103-114 NN denotes necroptosis
T10069 96-102 IN denotes during
T10068 91-95 NN denotes mRNA
T10067 86-90 NN denotes TNFα
T10066 83-85 IN denotes of
T10065 70-82 NN denotes upregulation
T10064 66-69 DT denotes the
T10063 63-65 TO denotes to
T10062 52-62 VB denotes contribute
T10061 45-51 NN denotes mTORC1
T10060 41-44 CC denotes and
T10059 37-40 NN denotes Akt
T10058 32-36 CC denotes both
T10057 27-31 IN denotes that
T10056 17-26 VB denotes suggested
T10055 8-16 NN denotes analysis
T10054 0-7 JJ denotes Further
R6568 T10055 T10054 arg1Of analysis,Further
R6569 T10055 T10056 arg1Of analysis,suggested
R6570 T10059 T10060 arg1Of Akt,and
R6571 T10060 T10058 arg1Of and,both
R6572 T10060 T10062 arg1Of and,contribute
R6573 T10061 T10060 arg2Of mTORC1,and
R6574 T10062 T10056 arg2Of contribute,suggested
R6575 T10062 T10057 arg1Of contribute,that
R6576 T10062 T10063 arg1Of contribute,to
R6577 T10062 T10069 arg1Of contribute,during
R6578 T10062 T10071 arg1Of contribute,as
R6579 T10065 T10063 arg2Of upregulation,to
R6580 T10065 T10064 arg1Of upregulation,the
R6581 T10065 T10066 arg1Of upregulation,of
R6582 T10068 T10066 arg2Of mRNA,of
R6583 T10068 T10067 arg1Of mRNA,TNFα
R6584 T10070 T10069 arg2Of necroptosis,during
R6585 T10074 T10072 arg1Of inhibition,both
R6586 T10074 T10073 arg1Of inhibition,small-molecule
R6587 T10074 T10075 arg1Of inhibition,and
R6588 T10075 T10082 arg1Of and,reduced
R6589 T10077 T10075 arg2Of knockdown,and
R6590 T10077 T10076 arg1Of knockdown,siRNA
R6591 T10077 T10078 arg1Of knockdown,of
R6592 T10079 T10080 arg1Of Akt,and
R6593 T10080 T10078 arg2Of and,of
R6594 T10081 T10080 arg2Of mTOR,and
R6595 T10082 T10071 arg2Of reduced,as
R6596 T10085 T10082 arg2Of levels,reduced
R6597 T10085 T10083 arg1Of levels,TNFα
R6598 T10085 T10084 arg1Of levels,mRNA
R6599 T10085 T10086 arg1Of levels,in
R6600 T10085 T10089 arg1Of levels,(
R6601 T10088 T10086 arg2Of cells,in
R6602 T10088 T10087 arg1Of cells,necroptotic
R6603 T10091 T10089 arg2Of 6B,(
R6604 T10091 T10090 arg1Of 6B,Fig.
R6605 T10091 T10092 arg1Of 6B,","
R6606 T10091 T10094 arg1Of 6B,","
R6607 T10093 T10092 arg2Of C,","
R6608 T10095 T10094 arg2Of D,","
R6609 T10096 T10089 arg3Of ),(
R6610 T10099 T10100 arg1Of RIP1,and
R6611 T10101 T10100 arg2Of Akt,and
R6612 T10102 T10099 arg1Of inhibitors,RIP1
R6613 T10102 T10101 arg1Of inhibitors,Akt
R6614 T10102 T10103 arg1Of inhibitors,had
R6615 T10103 T10097 arg1Of had,Notably
R6616 T10103 T10098 arg1Of had,","
R6617 T10103 T10106 arg1Of had,on
R6618 T10103 T10132 arg1Of had,","
R6619 T10103 T10133 modOf had,suggesting
R6620 T10105 T10103 arg2Of effect,had
R6621 T10105 T10104 arg1Of effect,no
R6622 T10108 T10106 arg2Of levels,on
R6623 T10108 T10107 arg1Of levels,the
R6624 T10108 T10109 arg1Of levels,of
R6625 T10108 T10112 arg1Of levels,in
R6626 T10108 T10116 arg1Of levels,in
R6627 T10108 T10123 arg1Of levels,(
R6628 T10111 T10109 arg2Of mRNA,of
R6629 T10111 T10110 arg1Of mRNA,TNFα
R6630 T10112 T10115 arg1Of in,or
R6631 T10114 T10112 arg2Of cells,in
R6632 T10114 T10113 arg1Of cells,control
R6633 T10116 T10115 arg2Of in,or
R6634 T10118 T10116 arg2Of cells,in
R6635 T10118 T10117 arg1Of cells,the
R6636 T10118 T10119 arg2Of cells,stimulated
R6637 T10119 T10120 arg1Of stimulated,with
R6638 T10121 T10120 arg2Of bFGF,with
R6639 T10121 T10122 arg1Of bFGF,alone
R6640 T10125 T10123 arg2Of 6A,(
R6641 T10125 T10124 arg1Of 6A,Fig.
R6642 T10125 T10126 arg1Of 6A,","
R6643 T10125 T10128 arg1Of 6A,","
R6644 T10127 T10126 arg2Of B,","
R6645 T10130 T10128 arg2Of S6C,","
R6646 T10130 T10129 arg1Of S6C,Fig.
R6647 T10131 T10123 arg3Of ),(
R6648 T10136 T10135 arg1Of kinases,these
R6649 T10136 T10138 arg1Of kinases,mediate
R6650 T10138 T10133 arg2Of mediate,suggesting
R6651 T10138 T10134 arg1Of mediate,that
R6652 T10138 T10137 arg1Of mediate,specifically
R6653 T10140 T10138 arg2Of increase,mediate
R6654 T10140 T10139 arg1Of increase,necroptosis-dependent
R6655 T10140 T10141 arg1Of increase,in
R6656 T10143 T10141 arg2Of synthesis,in
R6657 T10143 T10142 arg1Of synthesis,TNFα

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T9197 255-259 Antecedent denotes RIP1
T9196 419-432 Anaphor denotes these kinases
R5908 T9196 T9197 boundBy these kinases,RIP1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9239 488-492 Protein denotes TNFα
T9238 369-373 Protein denotes bFGF
T9237 310-314 Protein denotes TNFα
T9236 255-259 Protein denotes RIP1
T9235 193-197 Protein denotes TNFα
T9234 86-90 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10314 369-373 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T10312 488-492 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T10311 310-314 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T10310 193-197 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T10309 86-90 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T10273 172-175 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10272 37-40 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10260 264-267 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10259 172-175 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10258 37-40 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10293 255-259 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T10288 264-267 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10287 172-175 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10286 37-40 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10274 264-267 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10299 180-184 http://www.uniprot.org/uniprot/P42345 denotes mTOR

GO-BP

Id Subject Object Predicate Lexical cue
T9312 493-502 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T9282 454-465 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9281 103-114 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9260 103-114 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T9332 45-51 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T9327 347-352 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9326 331-336 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9325 225-230 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9111 246-503 Sentence denotes Notably, RIP1 and Akt inhibitors had no effect on the levels of TNFα mRNA in control cells or in the cells stimulated with bFGF alone (Fig. 6A,B, Fig. S6C), suggesting that these kinases specifically mediate necroptosis-dependent increase in TNFα synthesis.
T9110 0-245 Sentence denotes Further analysis suggested that both Akt and mTORC1 contribute to the upregulation of TNFα mRNA during necroptosis as both small-molecule inhibition and siRNA knockdown of Akt and mTOR reduced TNFα mRNA levels in necroptotic cells (Fig. 6B,C,D).
T161 0-245 Sentence denotes Further analysis suggested that both Akt and mTORC1 contribute to the upregulation of TNFα mRNA during necroptosis as both small-molecule inhibition and siRNA knockdown of Akt and mTOR reduced TNFα mRNA levels in necroptotic cells (Fig. 6B,C,D).
T162 246-503 Sentence denotes Notably, RIP1 and Akt inhibitors had no effect on the levels of TNFα mRNA in control cells or in the cells stimulated with bFGF alone (Fig. 6A,B, Fig. S6C), suggesting that these kinases specifically mediate necroptosis-dependent increase in TNFα synthesis.

simple1

Id Subject Object Predicate Lexical cue
T9375 488-492 Protein denotes TNFα
T9374 369-373 Protein denotes bFGF
T9373 310-314 Protein denotes TNFα
T9372 255-259 Protein denotes RIP1
T9371 193-197 Protein denotes TNFα
T9370 86-90 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10238 52-62 Positive_regulation denotes contribute
T10213 488-492 Protein denotes TNFα
T10212 369-373 Protein denotes bFGF
T10211 310-314 Protein denotes TNFα
T10210 255-259 Protein denotes RIP1
T10209 193-197 Protein denotes TNFα
T10208 86-90 Protein denotes TNFα
T10246 476-484 Positive_regulation denotes increase
T10245 493-502 Gene_expression denotes synthesis
T10244 268-278 Negative_regulation denotes inhibitors
T10243 446-453 Positive_regulation denotes mediate
T10242 286-292 Regulation denotes effect
T10241 203-209 Transcription denotes levels
T10240 70-82 Positive_regulation denotes upregulation
T10239 185-192 Negative_regulation denotes reduced
R6681 T10208 T10240 themeOf TNFα,upregulation
R6682 T10209 T10239 themeOf TNFα,reduced
R6683 T10209 T10241 themeOf TNFα,levels
R6684 T10210 T10244 themeOf RIP1,inhibitors
R6685 T10211 T10242 themeOf TNFα,effect
R6686 T10213 T10245 themeOf TNFα,synthesis
R6698 T10240 T10238 themeOf upregulation,contribute
R6699 T10245 T10246 themeOf synthesis,increase
R6700 T10246 T10243 themeOf increase,mediate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10530 476-484 Positive_regulation denotes increase
T10529 268-278 Negative_regulation denotes inhibitors
T10528 286-292 Regulation denotes effect
T10527 493-502 Gene_expression denotes synthesis
T10526 70-82 Positive_regulation denotes upregulation
T10525 185-192 Negative_regulation denotes reduced
T10524 52-62 Positive_regulation denotes contribute
T10500 488-492 Protein denotes TNFα
T10499 369-373 Protein denotes bFGF
T10498 310-314 Protein denotes TNFα
T10497 255-259 Protein denotes RIP1
T10496 193-197 Protein denotes TNFα
T10495 86-90 Protein denotes TNFα
R6797 T10495 T10526 themeOf TNFα,upregulation
R6798 T10496 T10525 themeOf TNFα,reduced
R6799 T10497 T10529 themeOf RIP1,inhibitors
R6800 T10498 T10528 themeOf TNFα,effect
R6801 T10500 T10527 themeOf TNFα,synthesis
R6814 T10526 T10524 themeOf upregulation,contribute
R6815 T10527 T10530 themeOf synthesis,increase

DLUT931

Id Subject Object Predicate Lexical cue
T10397 454-475 Regulation denotes necroptosis-dependent
T10396 446-453 Positive_regulation denotes mediate
T10395 476-484 Positive_regulation denotes increase
T10394 286-292 Regulation denotes effect
T10393 493-502 Gene_expression denotes synthesis
T10392 353-363 Positive_regulation denotes stimulated
T10353 255-259 Protein denotes RIP1
T10352 193-197 Protein denotes TNFα
T10351 86-90 Protein denotes TNFα
T10356 488-492 Protein denotes TNFα
T10391 315-319 Transcription denotes mRNA
T10390 268-278 Negative_regulation denotes inhibitors
T10389 52-62 Positive_regulation denotes contribute
T10388 203-209 Transcription denotes levels
T10387 70-82 Positive_regulation denotes upregulation
T10355 369-373 Protein denotes bFGF
T10354 310-314 Protein denotes TNFα
R6730 T10351 T10387 themeOf TNFα,upregulation
R6731 T10352 T10388 themeOf TNFα,levels
R6732 T10353 T10390 themeOf RIP1,inhibitors
R6733 T10354 T10391 themeOf TNFα,mRNA
R6734 T10355 T10392 themeOf bFGF,stimulated
R6735 T10356 T10393 themeOf TNFα,synthesis
R6753 T10387 T10389 themeOf upregulation,contribute
R6754 T10390 T10394 causeOf inhibitors,effect
R6755 T10391 T10394 themeOf mRNA,effect
R6756 T10393 T10395 themeOf synthesis,increase
R6757 T10395 T10396 themeOf increase,mediate
R6758 T10395 T10397 themeOf increase,necroptosis-dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10938 414-502 Regulation denotes that these kinases specifically mediate necroptosis-dependent increase in TNFα synthesis
T10936 454-502 Regulation denotes necroptosis-dependent increase in TNFα synthesis
T10934 66-114 Positive_regulation denotes the upregulation of TNFα mRNA during necroptosis
T10913 381-384 Protein denotes Fig
T10912 172-175 Protein denotes Akt
T10900 485-502 Protein denotes in TNFα synthesis
T10891 323-336 Entity denotes control cells
T10890 369-373 Protein denotes bFGF
T10885 419-432 Protein denotes these kinases
T10873 310-314 Protein denotes TNFα
T10872 180-184 Protein denotes mTOR
T10869 343-363 Entity denotes the cells stimulated
T10864 255-259 Protein denotes RIP1
T10858 86-90 Protein denotes TNFα
T10851 193-209 Protein denotes TNFα mRNA levels
T10849 264-267 Protein denotes Akt
T10846 37-40 Protein denotes Akt
T10843 232-235 Protein denotes Fig
T10842 83-95 Protein denotes of TNFα mRNA
T10832 193-197 Protein denotes TNFα
T10819 213-230 Entity denotes necroptotic cells
T10809 264-278 Entity denotes Akt inhibitors
T10806 123-137 Entity denotes small-molecule
T10801 307-319 Protein denotes of TNFα mRNA
T10800 392-395 Protein denotes Fig
T10793 46-51 Entity denotes TORC1
R6966 T10842 T10934 themeOf of TNFα mRNA,the upregulation of TNFα mRNA during necroptosis
R6971 T10885 T10938 causeOf these kinases,that these kinases specifically mediate necroptosis-dependent increase in TNFα synthesis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11727 502-503 . denotes .
T11726 493-502 NN denotes synthesis
T11725 488-492 NNP denotes TNFα
T11724 485-487 IN denotes in
T11723 476-484 NN denotes increase
T11722 454-475 JJ denotes necroptosis-dependent
T11721 446-453 VBP denotes mediate
T11720 433-445 RB denotes specifically
T11719 425-432 NNS denotes kinases
T11718 419-424 DT denotes these
T11717 414-418 IN denotes that
T11716 403-413 VBG denotes suggesting
T11715 401-402 , denotes ,
T11714 400-401 -RRB- denotes )
T11713 397-400 CD denotes S6C
T11712 395-396 . denotes .
T11711 392-395 NNP denotes Fig
T11710 390-391 , denotes ,
T11709 389-390 NNP denotes B
T11708 388-389 , denotes ,
T11707 386-388 NNP denotes 6A
T11706 381-385 NNP denotes Fig.
T11705 380-381 -LRB- denotes (
T11704 374-379 RB denotes alone
T11703 369-373 NNP denotes bFGF
T11702 364-368 IN denotes with
T11701 353-363 VBN denotes stimulated
T11700 347-352 NNS denotes cells
T11699 343-346 DT denotes the
T11698 340-342 IN denotes in
T11697 337-339 CC denotes or
T11696 331-336 NNS denotes cells
T11695 323-330 NN denotes control
T11694 320-322 IN denotes in
T11693 315-319 NNP denotes mRNA
T11692 310-314 NNP denotes TNFα
T11691 307-309 IN denotes of
T11690 300-306 NNS denotes levels
T11689 296-299 DT denotes the
T11688 293-295 IN denotes on
T11687 286-292 NN denotes effect
T11686 283-285 DT denotes no
T11685 279-282 VBD denotes had
T11684 268-278 NNS denotes inhibitors
T11683 264-267 NNP denotes Akt
T11682 260-263 CC denotes and
T11681 255-259 NNP denotes RIP1
T11680 253-254 , denotes ,
T11679 246-253 RB denotes Notably
T11678 244-245 . denotes .
T11677 243-244 -RRB- denotes )
T11676 242-243 NNP denotes D
T11675 241-242 , denotes ,
T11674 240-241 NNP denotes C
T11673 239-240 , denotes ,
T11672 237-239 NNP denotes 6B
T11671 232-236 NNP denotes Fig.
T11670 231-232 -LRB- denotes (
T11669 225-230 NNS denotes cells
T11668 213-224 JJ denotes necroptotic
T11667 210-212 IN denotes in
T11666 203-209 NNS denotes levels
T11665 198-202 NNP denotes mRNA
T11664 193-197 NNP denotes TNFα
T11663 185-192 VBD denotes reduced
T11662 180-184 NNP denotes mTOR
T11661 176-179 CC denotes and
T11660 172-175 NNP denotes Akt
T11659 169-171 IN denotes of
T11658 159-168 NN denotes knockdown
T11657 153-158 NN denotes siRNA
T11656 149-152 CC denotes and
T11655 138-148 NN denotes inhibition
T11654 123-137 JJ denotes small-molecule
T11653 118-122 DT denotes both
T11652 115-117 IN denotes as
T11651 103-114 NN denotes necroptosis
T11650 96-102 IN denotes during
T11639 32-36 DT denotes both
T11638 27-31 IN denotes that
T11637 17-26 VBD denotes suggested
T11636 8-16 NN denotes analysis
T11635 0-7 JJ denotes Further
T11649 91-95 NNP denotes mRNA
T11648 86-90 NNP denotes TNFα
T11647 83-85 IN denotes of
T11646 70-82 NN denotes upregulation
T11645 66-69 DT denotes the
T11644 63-65 TO denotes to
T11643 52-62 VBP denotes contribute
T11642 45-51 NNP denotes mTORC1
T11641 41-44 CC denotes and
T11640 37-40 NNP denotes Akt
R7629 T11640 T11643 nsubj Akt,contribute
R7633 T11641 T11640 cc and,Akt
R7637 T11642 T11640 conj mTORC1,Akt
R7640 T11643 T11637 ccomp contribute,suggested
R7644 T11644 T11643 prep to,contribute
R7648 T11645 T11646 det the,upregulation
R7652 T11646 T11644 pobj upregulation,to
R7657 T11647 T11646 prep of,upregulation
R7660 T11648 T11649 compound TNFα,mRNA
R7664 T11649 T11647 pobj mRNA,of
R7671 T11650 T11643 prep during,contribute
R7675 T11651 T11650 pobj necroptosis,during
R7678 T11652 T11663 mark as,reduced
R7682 T11653 T11655 det both,inhibition
R7686 T11654 T11655 amod small-molecule,inhibition
R7687 T11635 T11636 amod Further,analysis
R7688 T11636 T11637 nsubj analysis,suggested
R7689 T11637 T11637 ROOT suggested,suggested
R7690 T11655 T11652 pobj inhibition,as
R7691 T11638 T11643 mark that,contribute
R7692 T11639 T11640 preconj both,Akt
R7693 T11656 T11655 cc and,inhibition
R7694 T11657 T11655 conj siRNA,inhibition
R7696 T11659 T11658 prep of,knockdown
R7697 T11660 T11659 pobj Akt,of
R7698 T11661 T11660 cc and,Akt
R7699 T11662 T11660 conj mTOR,Akt
R7700 T11663 T11643 advcl reduced,contribute
R7701 T11664 T11665 compound TNFα,mRNA
R7702 T11665 T11666 compound mRNA,levels
R7703 T11666 T11663 dobj levels,reduced
R7704 T11667 T11663 prep in,reduced
R7705 T11668 T11669 amod necroptotic,cells
R7706 T11669 T11667 pobj cells,in
R7707 T11670 T11672 punct (,6B
R7708 T11671 T11672 compound Fig.,6B
R7709 T11672 T11643 npadvmod 6B,contribute
R7710 T11673 T11672 punct ",",6B
R7711 T11674 T11672 conj C,6B
R7712 T11675 T11674 punct ",",C
R7713 T11676 T11674 conj D,C
R7714 T11677 T11672 punct ),6B
R7715 T11678 T11637 punct .,suggested
R7716 T11679 T11685 advmod Notably,had
R7717 T11680 T11685 punct ",",had
R7718 T11681 T11684 nmod RIP1,inhibitors
R7719 T11682 T11681 cc and,RIP1
R7720 T11683 T11681 conj Akt,RIP1
R7721 T11684 T11685 nsubj inhibitors,had
R7722 T11685 T11685 ROOT had,had
R7723 T11686 T11687 det no,effect
R7724 T11687 T11685 dobj effect,had
R7725 T11688 T11687 prep on,effect
R7726 T11689 T11690 det the,levels
R7727 T11690 T11688 pobj levels,on
R7728 T11691 T11690 prep of,levels
R7729 T11692 T11693 compound TNFα,mRNA
R7730 T11693 T11691 pobj mRNA,of
R7731 T11694 T11690 prep in,levels
R7732 T11695 T11696 compound control,cells
R7733 T11696 T11694 pobj cells,in
R7734 T11697 T11694 cc or,in
R7735 T11698 T11694 conj in,in
R7736 T11699 T11700 det the,cells
R7737 T11700 T11698 pobj cells,in
R7738 T11701 T11700 acl stimulated,cells
R7739 T11702 T11701 prep with,stimulated
R7740 T11703 T11702 pobj bFGF,with
R7741 T11704 T11703 advmod alone,bFGF
R7742 T11705 T11707 punct (,6A
R7743 T11706 T11707 compound Fig.,6A
R7744 T11707 T11703 appos 6A,bFGF
R7745 T11708 T11707 punct ",",6A
R7746 T11709 T11707 conj B,6A
R7747 T11710 T11709 punct ",",B
R7748 T11711 T11709 conj Fig,B
R7749 T11712 T11685 punct .,had
R7750 T11713 T11713 ROOT S6C,S6C
R7751 T11714 T11713 punct ),S6C
R7752 T11715 T11713 punct ",",S6C
R7753 T11716 T11713 acl suggesting,S6C
R7754 T11717 T11721 mark that,mediate
R7755 T11718 T11719 det these,kinases
R7756 T11719 T11721 nsubj kinases,mediate
R7757 T11720 T11721 advmod specifically,mediate
R7758 T11721 T11716 ccomp mediate,suggesting
R7759 T11722 T11723 amod necroptosis-dependent,increase
R7760 T11723 T11721 dobj increase,mediate
R7761 T11724 T11723 prep in,increase
R7762 T11725 T11726 compound TNFα,synthesis
R7763 T11726 T11724 pobj synthesis,in
R7764 T11727 T11713 punct .,S6C
R7695 T11658 T11655 conj knockdown,inhibition

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10661 476-484 Positive_regulation denotes increase
T10660 493-502 Gene_expression denotes synthesis
T10659 286-292 Regulation denotes effect
T10658 286-292 Regulation denotes effect
T10657 268-278 Negative_regulation denotes inhibitors
T10656 268-278 Negative_regulation denotes inhibitors
T10655 488-492 Protein denotes TNFα
T10654 369-373 Protein denotes bFGF
T10653 310-319 Protein denotes TNFα mRNA
T10652 264-267 Protein denotes Akt
T10651 255-259 Protein denotes RIP1
T10650 153-158 Negative_regulation denotes siRNA
T10649 153-158 Negative_regulation denotes siRNA
T10648 138-148 Negative_regulation denotes inhibition
T10647 138-148 Negative_regulation denotes inhibition
T10646 52-62 Positive_regulation denotes contribute
T10645 52-62 Positive_regulation denotes contribute
T10644 203-209 Positive_regulation denotes levels
T10643 159-168 Negative_regulation denotes knockdown
T10642 159-168 Negative_regulation denotes knockdown
T10641 153-158 Negative_regulation denotes siRNA
T10640 70-82 Positive_regulation denotes upregulation
T10639 180-202 Protein denotes mTOR reduced TNFα mRNA
T10638 172-175 Protein denotes Akt
T10637 86-95 Protein denotes TNFα mRNA
T10636 45-51 Protein denotes mTORC1
T10635 37-40 Protein denotes Akt
R6869 T10636 T10646 causeOf mTORC1,contribute
R6874 T10640 T10645 themeOf upregulation,contribute
R6875 T10640 T10646 themeOf upregulation,contribute
R6877 T10642 T10647 themeOf knockdown,inhibition
R6878 T10642 T10649 themeOf knockdown,siRNA
R6879 T10643 T10648 themeOf knockdown,inhibition
R6880 T10643 T10650 themeOf knockdown,siRNA
R6881 T10651 T10656 themeOf RIP1,inhibitors
R6882 T10652 T10657 themeOf Akt,inhibitors
R6883 T10653 T10658 themeOf TNFα mRNA,effect
R6884 T10653 T10659 themeOf TNFα mRNA,effect
R6885 T10655 T10660 themeOf TNFα,synthesis
R6886 T10656 T10658 causeOf inhibitors,effect
R6887 T10657 T10659 causeOf inhibitors,effect
R6888 T10660 T10661 themeOf synthesis,increase
R6868 T10635 T10645 causeOf Akt,contribute
R6870 T10637 T10640 themeOf TNFα mRNA,upregulation
R6871 T10638 T10641 themeOf Akt,siRNA
R6872 T10638 T10642 themeOf Akt,knockdown
R6873 T10639 T10644 themeOf mTOR reduced TNFα mRNA,levels
R6876 T10641 T10643 themeOf siRNA,knockdown

test3

Id Subject Object Predicate Lexical cue
T9005 488-492 Protein denotes TNFα
T9004 369-373 Protein denotes bFGF
T9003 310-314 Protein denotes TNFα
T9002 255-259 Protein denotes RIP1
T9001 193-197 Protein denotes TNFα
T9000 86-90 Protein denotes TNFα
T9083 493-502 Gene_expression denotes synthesis
T9082 488-492 Protein denotes TNFα
T9081 476-484 Positive_regulation denotes increase
T9080 369-373 Protein denotes bFGF
T9079 310-314 Protein denotes TNFα
T9078 286-292 Regulation denotes effect
T9077 268-278 Negative_regulation denotes inhibitors
T9076 255-259 Protein denotes RIP1
T9075 193-197 Protein denotes TNFα
T9074 185-192 Negative_regulation denotes reduced
T9073 159-168 Negative_regulation denotes knockdown
T9072 86-90 Protein denotes TNFα
T9071 70-82 Positive_regulation denotes upregulation
T9070 52-62 Positive_regulation denotes contribute
R5853 T9071 T9070 themeOf upregulation,contribute
R5854 T9072 T9071 themeOf TNFα,upregulation
R5855 T9073 T9074 causeOf knockdown,reduced
R5856 T9076 T9077 themeOf RIP1,inhibitors
R5857 T9077 T9078 causeOf inhibitors,effect
R5858 T9080 T9078 causeOf bFGF,effect
R5859 T9082 T9083 themeOf TNFα,synthesis
R5860 T9083 T9081 themeOf synthesis,increase