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PMC:3585731 / 24387-24517 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T30643 77-81 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T30731 118-129 NN denotes necroptosis
T30730 111-117 IN denotes during
T30729 100-110 NN denotes activation
T30728 96-99 NN denotes JNK
T30727 92-95 CC denotes and
T30726 82-91 NN denotes synthesis
T30725 77-81 NN denotes TNFα
T30724 67-76 JJ denotes autocrine
T30723 59-66 NN denotes control
T30722 52-58 NN denotes mTORC1
T30721 48-51 CC denotes and
T30720 44-47 NN denotes Akt
R21211 T30720 T30721 arg1Of Akt,and
R21212 T30721 T30730 arg1Of and,during
R21213 T30726 T30722 arg1Of synthesis,mTORC1
R21214 T30726 T30723 arg1Of synthesis,control
R21215 T30726 T30724 arg1Of synthesis,autocrine
R21216 T30726 T30725 arg1Of synthesis,TNFα
R21217 T30726 T30727 arg1Of synthesis,and
R21218 T30727 T30721 arg2Of and,and
R21219 T30729 T30727 arg2Of activation,and
R21220 T30729 T30728 arg1Of activation,JNK
R21221 T30731 T30730 arg2Of necroptosis,during

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T30685 77-81 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T30880 77-81 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30877 44-47 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T30874 44-47 http://www.uniprot.org/uniprot/P31751 denotes Akt
T30871 44-47 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T30697 118-129 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T30695 118-129 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T30694 96-99 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T30693 82-91 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

GO-MF

Id Subject Object Predicate Lexical cue
T30699 96-99 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T30701 52-58 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T30670 44-130 Sentence denotes Akt and mTORC1 control autocrine TNFα synthesis and JNK activation during necroptosis.
T156 0-130 Sentence denotes 10.1371/journal.pone.0056576.g006 Figure 6 Akt and mTORC1 control autocrine TNFα synthesis and JNK activation during necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T30712 77-81 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T30869 59-66 Regulation denotes control
T30868 82-91 Gene_expression denotes synthesis
T30860 77-81 Protein denotes TNFα
R21353 T30860 T30868 themeOf TNFα,synthesis
R21355 T30868 T30869 themeOf synthesis,control

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T30914 82-91 Gene_expression denotes synthesis
T30913 67-76 Positive_regulation denotes autocrine
T30905 77-81 Protein denotes TNFα
R21359 T30905 T30914 themeOf TNFα,synthesis
R21361 T30914 T30913 themeOf synthesis,autocrine

DLUT931

Id Subject Object Predicate Lexical cue
T30895 67-76 Positive_regulation denotes autocrine
T30894 82-91 Gene_expression denotes synthesis
T30886 77-81 Protein denotes TNFα
R21356 T30886 T30894 themeOf TNFα,synthesis
R21358 T30894 T30895 themeOf synthesis,autocrine

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T31152 96-129 Positive_regulation denotes JNK activation during necroptosis
T31143 67-91 Protein denotes autocrine TNFα synthesis
T31129 44-47 Protein denotes Akt
T31121 96-99 Protein denotes JNK
T31120 52-58 Entity denotes mTORC1
R21540 T31121 T31152 themeOf JNK,JNK activation during necroptosis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T30954 129-130 . denotes .
T30953 118-129 NN denotes necroptosis
T30952 111-117 IN denotes during
T30951 100-110 NN denotes activation
T30950 96-99 NNP denotes JNK
T30949 92-95 CC denotes and
T30948 82-91 NN denotes synthesis
T30947 77-81 NNP denotes TNFα
T30946 67-76 NN denotes autocrine
T30945 59-66 NN denotes control
T30944 52-58 NNP denotes mTORC1
T30943 48-51 CC denotes and
T30942 44-47 NNP denotes Akt
R21376 T30942 T30942 ROOT Akt,Akt
R21377 T30943 T30942 cc and,Akt
R21378 T30944 T30942 conj mTORC1,Akt
R21379 T30945 T30948 nmod control,synthesis
R21380 T30946 T30948 compound autocrine,synthesis
R21381 T30947 T30948 compound TNFα,synthesis
R21382 T30948 T30942 appos synthesis,Akt
R21383 T30949 T30948 cc and,synthesis
R21384 T30950 T30951 compound JNK,activation
R21385 T30951 T30948 conj activation,synthesis
R21386 T30952 T30951 prep during,activation
R21387 T30953 T30952 pobj necroptosis,during
R21388 T30954 T30942 punct .,Akt

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T30925 59-66 Regulation denotes control
T30924 59-66 Regulation denotes control
T30923 59-66 Regulation denotes control
T30922 100-110 Positive_regulation denotes activation
T30921 100-110 Positive_regulation denotes activation
T30920 82-91 Gene_expression denotes synthesis
T30919 96-99 Protein denotes JNK
T30918 77-81 Protein denotes TNFα
T30917 52-58 Protein denotes mTORC1
T30916 44-47 Protein denotes Akt
T30927 59-66 Regulation denotes control
T30926 59-66 Regulation denotes control
R21362 T30916 T30923 causeOf Akt,control
R21363 T30916 T30924 causeOf Akt,control
R21364 T30917 T30925 causeOf mTORC1,control
R21365 T30917 T30926 causeOf mTORC1,control
R21366 T30917 T30927 causeOf mTORC1,control
R21367 T30918 T30920 themeOf TNFα,synthesis
R21368 T30919 T30921 themeOf JNK,activation
R21369 T30920 T30922 themeOf synthesis,activation
R21370 T30920 T30925 themeOf synthesis,control
R21371 T30921 T30923 themeOf activation,control
R21372 T30921 T30926 themeOf activation,control
R21373 T30922 T30924 themeOf activation,control
R21374 T30922 T30927 themeOf activation,control

test3

Id Subject Object Predicate Lexical cue
T30660 77-81 Protein denotes TNFα
T30652 77-81 Protein denotes TNFα