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PMC:3585731 / 24133-24386 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8954 82-91 Positive_regulation denotes increased
T8953 33-45 Positive_regulation denotes upregulation
T8952 17-23 Positive_regulation denotes caused
T8918 238-242 Protein denotes TNFα
T8917 49-53 Protein denotes TNFα
R5811 T8917 T8953 themeOf TNFα,upregulation
R5822 T8953 T8952 themeOf upregulation,caused
R5823 T8953 T8954 themeOf upregulation,increased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10053 243-252 NN denotes synthesis
T10052 238-242 NN denotes TNFα
T10051 228-237 JJ denotes autocrine
T10050 225-227 IN denotes in
T10049 216-224 NN denotes increase
T10048 209-215 JJ denotes marked
T10047 207-208 DT denotes a
T10046 204-206 IN denotes by
T10045 192-203 VB denotes accompanied
T10044 179-191 RB denotes specifically
T10043 176-178 VB denotes is
T10042 164-175 NN denotes necroptosis
T10041 161-163 IN denotes of
T10040 150-160 NN denotes activation
T10039 145-149 IN denotes that
T10038 131-144 VB denotes demonstrating
T10037 129-130 -COMMA- denotes ,
T10036 128-129 -RRB- denotes )
T10035 126-128 NN denotes 6A
T10034 121-125 NN denotes Fig.
T10033 120-121 -LRB- denotes (
T10032 111-119 NN denotes zVAD.fmk
T10031 108-110 IN denotes of
T10030 99-107 NN denotes presence
T10029 95-98 DT denotes the
T10028 92-94 IN denotes in
T10027 82-91 VB denotes increased
T10026 74-81 RB denotes further
T10025 70-73 RB denotes not
T10024 66-69 VB denotes was
T10023 60-65 WDT denotes which
T10022 58-59 -COMMA- denotes ,
T10021 54-58 NN denotes mRNA
T10020 49-53 NN denotes TNFα
T10019 46-48 IN denotes of
T10018 33-45 NN denotes upregulation
T10017 26-32 JJ denotes modest
T10016 24-25 DT denotes a
T10015 17-23 VB denotes caused
T10014 12-16 NN denotes PDGF
T10013 10-11 -COMMA- denotes ,
T10012 0-10 RB denotes Conversely
R6525 T10014 T10015 arg1Of PDGF,caused
R6526 T10015 T10012 arg1Of caused,Conversely
R6527 T10015 T10013 arg1Of caused,","
R6528 T10018 T10015 arg2Of upregulation,caused
R6529 T10018 T10016 arg1Of upregulation,a
R6530 T10018 T10017 arg1Of upregulation,modest
R6531 T10018 T10019 arg1Of upregulation,of
R6532 T10018 T10022 arg1Of upregulation,","
R6533 T10018 T10023 arg1Of upregulation,which
R6534 T10018 T10024 arg1Of upregulation,was
R6535 T10018 T10027 arg2Of upregulation,increased
R6536 T10021 T10019 arg2Of mRNA,of
R6537 T10021 T10020 arg1Of mRNA,TNFα
R6538 T10027 T10024 arg2Of increased,was
R6539 T10027 T10025 arg1Of increased,not
R6540 T10027 T10026 arg1Of increased,further
R6541 T10027 T10028 arg1Of increased,in
R6542 T10027 T10037 arg1Of increased,","
R6543 T10027 T10038 modOf increased,demonstrating
R6544 T10028 T10029 arg1Of in,the
R6545 T10028 T10031 arg1Of in,of
R6546 T10030 T10028 arg2Of presence,in
R6547 T10032 T10028 arg3Of zVAD.fmk,in
R6548 T10032 T10033 arg1Of zVAD.fmk,(
R6549 T10035 T10033 arg2Of 6A,(
R6550 T10035 T10034 arg1Of 6A,Fig.
R6551 T10036 T10033 arg3Of ),(
R6552 T10040 T10041 arg1Of activation,of
R6553 T10040 T10043 arg1Of activation,is
R6554 T10040 T10045 arg2Of activation,accompanied
R6555 T10042 T10041 arg2Of necroptosis,of
R6556 T10045 T10038 arg2Of accompanied,demonstrating
R6557 T10045 T10039 arg1Of accompanied,that
R6558 T10045 T10043 arg2Of accompanied,is
R6559 T10045 T10044 arg1Of accompanied,specifically
R6560 T10049 T10045 arg1Of increase,accompanied
R6561 T10049 T10046 arg2Of increase,by
R6562 T10049 T10047 arg1Of increase,a
R6563 T10049 T10048 arg1Of increase,marked
R6564 T10049 T10050 arg1Of increase,in
R6565 T10053 T10050 arg2Of synthesis,in
R6566 T10053 T10051 arg1Of synthesis,autocrine
R6567 T10053 T10052 arg1Of synthesis,TNFα

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T9195 33-45 Antecedent denotes upregulation
T9194 60-65 Anaphor denotes which
R5907 T9194 T9195 boundBy which,upregulation

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9233 238-242 Protein denotes TNFα
T9232 49-53 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10308 238-242 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T10307 49-53 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T9311 243-252 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T9280 164-175 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9262 150-175 http://purl.obolibrary.org/obo/GO_0070266 denotes activation of necroptosis
T9259 164-175 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T9321 12-16 http://purl.obolibrary.org/obo/GO_0005161 denotes PDGF

sentences

Id Subject Object Predicate Lexical cue
T9109 0-253 Sentence denotes Conversely, PDGF caused a modest upregulation of TNFα mRNA, which was not further increased in the presence of zVAD.fmk (Fig. 6A), demonstrating that activation of necroptosis is specifically accompanied by a marked increase in autocrine TNFα synthesis.
T155 0-253 Sentence denotes Conversely, PDGF caused a modest upregulation of TNFα mRNA, which was not further increased in the presence of zVAD.fmk (Fig. 6A), demonstrating that activation of necroptosis is specifically accompanied by a marked increase in autocrine TNFα synthesis.

simple1

Id Subject Object Predicate Lexical cue
T9369 238-242 Protein denotes TNFα
T9368 49-53 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10237 82-91 Positive_regulation denotes increased
T10236 243-252 Gene_expression denotes synthesis
T10235 33-45 Positive_regulation denotes upregulation
T10234 216-224 Positive_regulation denotes increase
T10207 238-242 Protein denotes TNFα
T10206 49-53 Protein denotes TNFα
R6679 T10206 T10235 themeOf TNFα,upregulation
R6680 T10207 T10236 themeOf TNFα,synthesis
R6696 T10235 T10237 themeOf upregulation,increased
R6697 T10236 T10234 themeOf synthesis,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10523 33-45 Positive_regulation denotes upregulation
T10522 216-224 Positive_regulation denotes increase
T10521 82-91 Positive_regulation denotes increased
T10520 243-252 Gene_expression denotes synthesis
T10519 228-237 Positive_regulation denotes autocrine
T10494 238-242 Protein denotes TNFα
T10493 49-53 Protein denotes TNFα
R6795 T10493 T10523 themeOf TNFα,upregulation
R6796 T10494 T10520 themeOf TNFα,synthesis
R6811 T10520 T10522 themeOf synthesis,increase
R6812 T10520 T10519 themeOf synthesis,autocrine
R6813 T10523 T10521 themeOf upregulation,increased

DLUT931

Id Subject Object Predicate Lexical cue
T10350 238-242 Protein denotes TNFα
T10349 49-53 Protein denotes TNFα
T10386 228-237 Positive_regulation denotes autocrine
T10385 216-224 Positive_regulation denotes increase
T10384 17-23 Positive_regulation denotes caused
T10383 243-252 Gene_expression denotes synthesis
T10382 82-91 Positive_regulation denotes increased
T10381 33-45 Positive_regulation denotes upregulation
R6728 T10349 T10381 themeOf TNFα,upregulation
R6729 T10350 T10383 themeOf TNFα,synthesis
R6749 T10381 T10382 themeOf upregulation,increased
R6750 T10381 T10384 themeOf upregulation,caused
R6751 T10383 T10385 themeOf synthesis,increase
R6752 T10383 T10386 themeOf synthesis,autocrine

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10925 24-59 Positive_regulation denotes a modest upregulation of TNFα mRNA,
T10898 49-53 Protein denotes TNFα
T10877 111-130 Entity denotes zVAD.fmk (Fig. 6A),
T10818 46-59 Protein denotes of TNFα mRNA,
T10799 225-252 Protein denotes in autocrine TNFα synthesis
R6963 T10818 T10925 themeOf "of TNFα mRNA,","a modest upregulation of TNFα mRNA,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11634 252-253 . denotes .
T11633 243-252 NN denotes synthesis
T11632 238-242 NNP denotes TNFα
T11631 228-237 NN denotes autocrine
T11630 225-227 IN denotes in
T11629 216-224 NN denotes increase
T11628 209-215 JJ denotes marked
T11627 207-208 DT denotes a
T11626 204-206 IN denotes by
T11625 192-203 VBN denotes accompanied
T11624 179-191 RB denotes specifically
T11623 176-178 VBZ denotes is
T11622 164-175 NN denotes necroptosis
T11621 161-163 IN denotes of
T11620 150-160 NN denotes activation
T11619 145-149 IN denotes that
T11618 131-144 VBG denotes demonstrating
T11617 129-130 , denotes ,
T11616 128-129 -RRB- denotes )
T11615 126-128 NNP denotes 6A
T11614 121-125 NNP denotes Fig.
T11613 120-121 -LRB- denotes (
T11612 111-119 NNP denotes zVAD.fmk
T11611 108-110 IN denotes of
T11610 99-107 NN denotes presence
T11609 95-98 DT denotes the
T11608 92-94 IN denotes in
T11607 82-91 VBN denotes increased
T11606 74-81 JJ denotes further
T11605 70-73 RB denotes not
T11604 66-69 VBD denotes was
T11603 60-65 WDT denotes which
T11602 58-59 , denotes ,
T11601 54-58 NNP denotes mRNA
T11600 49-53 NNP denotes TNFα
T11599 46-48 IN denotes of
T11598 33-45 NN denotes upregulation
T11597 26-32 JJ denotes modest
T11596 24-25 DT denotes a
T11595 17-23 VBD denotes caused
T11594 12-16 NNP denotes PDGF
T11593 10-11 , denotes ,
T11592 0-10 RB denotes Conversely
R7630 T11592 T11595 advmod Conversely,caused
R7631 T11593 T11595 punct ",",caused
R7632 T11594 T11595 nsubj PDGF,caused
R7634 T11595 T11595 ROOT caused,caused
R7635 T11596 T11598 det a,upregulation
R7636 T11597 T11598 amod modest,upregulation
R7638 T11598 T11595 dobj upregulation,caused
R7639 T11599 T11598 prep of,upregulation
R7641 T11600 T11601 compound TNFα,mRNA
R7642 T11601 T11599 pobj mRNA,of
R7643 T11602 T11601 punct ",",mRNA
R7645 T11603 T11604 nsubj which,was
R7646 T11604 T11598 relcl was,upregulation
R7647 T11605 T11607 neg not,increased
R7649 T11606 T11607 advmod further,increased
R7650 T11607 T11595 conj increased,caused
R7651 T11608 T11607 prep in,increased
R7653 T11609 T11610 det the,presence
R7654 T11610 T11608 pobj presence,in
R7655 T11611 T11610 prep of,presence
R7656 T11612 T11611 pobj zVAD.fmk,of
R7658 T11613 T11615 punct (,6A
R7659 T11614 T11615 compound Fig.,6A
R7661 T11615 T11612 appos 6A,zVAD.fmk
R7662 T11616 T11615 punct ),6A
R7663 T11617 T11607 punct ",",increased
R7665 T11618 T11607 advcl demonstrating,increased
R7666 T11619 T11625 mark that,accompanied
R7667 T11620 T11625 nsubjpass activation,accompanied
R7668 T11621 T11620 prep of,activation
R7669 T11622 T11621 pobj necroptosis,of
R7670 T11623 T11625 auxpass is,accompanied
R7672 T11624 T11625 advmod specifically,accompanied
R7673 T11625 T11618 ccomp accompanied,demonstrating
R7674 T11626 T11625 agent by,accompanied
R7676 T11627 T11629 det a,increase
R7677 T11628 T11629 amod marked,increase
R7679 T11629 T11626 pobj increase,by
R7680 T11630 T11629 prep in,increase
R7681 T11631 T11632 compound autocrine,TNFα
R7683 T11632 T11633 compound TNFα,synthesis
R7684 T11633 T11630 pobj synthesis,in
R7685 T11634 T11607 punct .,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10634 216-224 Positive_regulation denotes increase
T10633 17-23 Positive_regulation denotes caused
T10632 243-252 Gene_expression denotes synthesis
T10631 82-91 Positive_regulation denotes increased
T10630 33-45 Positive_regulation denotes upregulation
T10629 228-242 Protein denotes autocrine TNFα
T10628 121-128 Protein denotes Fig. 6A
T10627 111-119 Protein denotes zVAD.fmk
T10626 49-58 Protein denotes TNFα mRNA
T10625 12-16 Protein denotes PDGF
R6861 T10625 T10633 causeOf PDGF,caused
R6862 T10626 T10630 themeOf TNFα mRNA,upregulation
R6863 T10628 T10631 causeOf Fig. 6A,increased
R6864 T10629 T10632 themeOf autocrine TNFα,synthesis
R6865 T10630 T10631 themeOf upregulation,increased
R6866 T10630 T10633 themeOf upregulation,caused
R6867 T10632 T10634 themeOf synthesis,increase

test3

Id Subject Object Predicate Lexical cue
T8999 238-242 Protein denotes TNFα
T8998 49-53 Protein denotes TNFα
T9069 243-252 Gene_expression denotes synthesis
T9068 238-242 Protein denotes TNFα
T9067 82-91 Positive_regulation denotes increased
T9066 49-53 Protein denotes TNFα
T9065 33-45 Positive_regulation denotes upregulation
T9064 17-23 Positive_regulation denotes caused
R5849 T9065 T9064 themeOf upregulation,caused
R5850 T9065 T9067 themeOf upregulation,increased
R5851 T9066 T9065 themeOf TNFα,upregulation
R5852 T9068 T9069 themeOf TNFα,synthesis