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PMC:3585731 / 23514-23693 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8945 131-140 Gene_expression denotes synthesis
T8944 121-130 Positive_regulation denotes increased
T8909 144-148 Protein denotes TNFα
R5807 T8909 T8945 themeOf TNFα,synthesis
R5820 T8945 T8944 themeOf synthesis,increased

2_test

Id Subject Object Predicate Lexical cue
23469174-19109899-90505442 15-17 19109899 denotes 10

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9931 173-178 NN denotes death
T9930 168-172 NN denotes cell
T9929 156-167 VB denotes potentiates
T9928 150-155 WDT denotes which
T9927 148-149 -COMMA- denotes ,
T9926 144-148 NN denotes TNFα
T9925 141-143 IN denotes of
T9924 131-140 NN denotes synthesis
T9923 121-130 VB denotes increased
T9922 116-120 IN denotes with
T9921 105-115 VB denotes associated
T9920 102-104 VB denotes is
T9919 96-101 NN denotes cells
T9918 91-95 NN denotes L929
T9917 88-90 IN denotes in
T9916 79-87 NN denotes zVAD.fmk
T9915 76-78 IN denotes by
T9914 64-75 NN denotes necroptosis
T9913 61-63 IN denotes of
T9912 51-60 NN denotes induction
T9911 47-50 DT denotes the
T9910 42-46 IN denotes that
T9909 33-41 VB denotes reported
T9908 24-32 RB denotes recently
T9907 19-23 VB denotes have
T9906 17-18 -RRB- denotes ]
T9905 15-17 CD denotes 10
T9904 14-15 -LRB- denotes [
T9903 10-13 FW denotes al.
T9902 7-9 FW denotes et
T9901 0-6 NNP denotes Hitomi
R6415 T9903 T9901 arg1Of al.,Hitomi
R6416 T9903 T9902 arg1Of al.,et
R6417 T9903 T9904 arg1Of al.,[
R6418 T9903 T9907 arg1Of al.,have
R6419 T9903 T9909 arg1Of al.,reported
R6420 T9905 T9904 arg2Of 10,[
R6421 T9906 T9904 arg3Of ],[
R6422 T9909 T9907 arg2Of reported,have
R6423 T9909 T9908 arg1Of reported,recently
R6424 T9912 T9911 arg1Of induction,the
R6425 T9912 T9913 arg1Of induction,of
R6426 T9912 T9915 arg1Of induction,by
R6427 T9912 T9917 arg1Of induction,in
R6428 T9912 T9920 arg1Of induction,is
R6429 T9912 T9921 arg2Of induction,associated
R6430 T9914 T9913 arg2Of necroptosis,of
R6431 T9916 T9915 arg2Of zVAD.fmk,by
R6432 T9919 T9917 arg2Of cells,in
R6433 T9919 T9918 arg1Of cells,L929
R6434 T9921 T9909 arg2Of associated,reported
R6435 T9921 T9910 arg1Of associated,that
R6436 T9921 T9920 arg2Of associated,is
R6437 T9921 T9922 arg1Of associated,with
R6438 T9924 T9922 arg2Of synthesis,with
R6439 T9924 T9923 arg2Of synthesis,increased
R6440 T9924 T9925 arg1Of synthesis,of
R6441 T9924 T9927 arg1Of synthesis,","
R6442 T9924 T9928 arg1Of synthesis,which
R6443 T9924 T9929 arg1Of synthesis,potentiates
R6444 T9926 T9925 arg2Of TNFα,of
R6445 T9931 T9929 arg2Of death,potentiates
R6446 T9931 T9930 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9224 144-148 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10302 144-148 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T9309 131-140 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T9299 173-178 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T9296 168-178 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T9278 64-75 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9261 51-75 http://purl.obolibrary.org/obo/GO_0070266 denotes induction of necroptosis
T9257 64-75 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T9333 96-115 http://purl.obolibrary.org/obo/GO_0009986 denotes cells is associated
T9323 168-172 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T9105 0-179 Sentence denotes Hitomi et al. [10] have recently reported that the induction of necroptosis by zVAD.fmk in L929 cells is associated with increased synthesis of TNFα, which potentiates cell death.
T151 0-179 Sentence denotes Hitomi et al. [10] have recently reported that the induction of necroptosis by zVAD.fmk in L929 cells is associated with increased synthesis of TNFα, which potentiates cell death.

simple1

Id Subject Object Predicate Lexical cue
T9360 144-148 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10227 131-140 Gene_expression denotes synthesis
T10226 121-130 Positive_regulation denotes increased
T10198 144-148 Protein denotes TNFα
R6672 T10198 T10227 themeOf TNFα,synthesis
R6694 T10227 T10226 themeOf synthesis,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10485 144-148 Protein denotes TNFα
T10513 121-130 Positive_regulation denotes increased
T10512 131-140 Gene_expression denotes synthesis
R6790 T10485 T10512 themeOf TNFα,synthesis
R6808 T10512 T10513 themeOf synthesis,increased

DLUT931

Id Subject Object Predicate Lexical cue
T10341 144-148 Protein denotes TNFα
T10372 121-130 Positive_regulation denotes increased
T10371 131-140 Gene_expression denotes synthesis
R6720 T10341 T10371 themeOf TNFα,synthesis
R6744 T10371 T10372 themeOf synthesis,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10904 76-87 Entity denotes by zVAD.fmk
T10825 144-178 Protein denotes TNFα, which potentiates cell death

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11506 178-179 . denotes .
T11505 173-178 NN denotes death
T11504 168-172 NN denotes cell
T11503 156-167 VBZ denotes potentiates
T11502 150-155 WDT denotes which
T11501 148-149 , denotes ,
T11500 144-148 NNP denotes TNFα
T11499 141-143 IN denotes of
T11498 131-140 NN denotes synthesis
T11497 121-130 VBN denotes increased
T11496 116-120 IN denotes with
T11495 105-115 VBN denotes associated
T11494 102-104 VBZ denotes is
T11493 96-101 NNS denotes cells
T11492 91-95 NNP denotes L929
T11491 88-90 IN denotes in
T11490 79-87 NNP denotes zVAD.fmk
T11489 76-78 IN denotes by
T11488 64-75 NN denotes necroptosis
T11487 61-63 IN denotes of
T11486 51-60 NN denotes induction
T11485 47-50 DT denotes the
T11484 42-46 IN denotes that
T11483 33-41 VBN denotes reported
T11482 24-32 RB denotes recently
T11481 19-23 VBP denotes have
T11480 17-18 NNP denotes ]
T11479 15-17 CD denotes 10
T11478 14-15 NNP denotes [
T11477 10-13 FW denotes al.
T11476 7-9 FW denotes et
T11475 0-6 NNP denotes Hitomi
R7468 T11475 T11478 compound Hitomi,[
R7469 T11476 T11477 compound et,al.
R7470 T11477 T11478 compound al.,[
R7471 T11478 T11483 nsubj [,reported
R7473 T11479 T11480 nummod 10,]
R7474 T11480 T11483 nsubj ],reported
R7475 T11481 T11483 aux have,reported
R7476 T11482 T11483 advmod recently,reported
R7478 T11483 T11483 ROOT reported,reported
R7479 T11484 T11495 mark that,associated
R7481 T11485 T11486 det the,induction
R7482 T11486 T11495 nsubjpass induction,associated
R7483 T11487 T11486 prep of,induction
R7485 T11488 T11487 pobj necroptosis,of
R7486 T11489 T11486 prep by,induction
R7487 T11490 T11489 pobj zVAD.fmk,by
R7489 T11491 T11486 prep in,induction
R7490 T11492 T11493 compound L929,cells
R7491 T11493 T11491 pobj cells,in
R7493 T11494 T11495 auxpass is,associated
R7494 T11495 T11483 ccomp associated,reported
R7496 T11496 T11495 prep with,associated
R7497 T11497 T11498 amod increased,synthesis
R7498 T11498 T11496 pobj synthesis,with
R7500 T11499 T11498 prep of,synthesis
R7501 T11500 T11499 pobj TNFα,of
R7502 T11501 T11500 punct ",",TNFα
R7506 T11502 T11503 nsubj which,potentiates
R7507 T11503 T11500 relcl potentiates,TNFα
R7509 T11504 T11505 compound cell,death
R7510 T11505 T11503 dobj death,potentiates
R7511 T11506 T11483 punct .,reported

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10604 131-140 Gene_expression denotes synthesis
T10603 144-148 Protein denotes TNFα
R6848 T10603 T10604 themeOf TNFα,synthesis

test3

Id Subject Object Predicate Lexical cue
T8990 144-148 Protein denotes TNFα
T9049 144-148 Protein denotes TNFα
T9048 131-140 Gene_expression denotes synthesis
T9047 121-130 Positive_regulation denotes increased
R5837 T9048 T9047 themeOf synthesis,increased
R5838 T9049 T9048 themeOf TNFα,synthesis