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PMC:3585731 / 22449-22645 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8937 0-9 Negative_regulation denotes Knockdown
T8899 167-171 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9757 194-195 -RRB- denotes )
T9756 192-194 NN denotes 5D
T9755 187-191 NN denotes Fig.
T9754 186-187 -LRB- denotes (
T9753 180-185 NN denotes death
T9752 172-179 VB denotes induced
T9751 167-171 NN denotes TNFα
T9750 163-166 CC denotes and
T9749 154-162 NN denotes zVAD.fmk
T9748 149-153 CC denotes both
T9747 144-148 IN denotes from
T9746 138-143 NN denotes cells
T9745 127-137 VB denotes protecting
T9744 124-126 IN denotes by
T9743 112-123 NN denotes necroptosis
T9742 109-111 IN denotes in
T9741 104-108 NN denotes mTOR
T9740 100-103 IN denotes for
T9739 95-99 NN denotes role
T9738 93-94 DT denotes a
T9737 82-92 VB denotes indicating
T9736 77-81 NN denotes data
T9735 67-76 NN denotes inhibitor
T9734 52-66 JJ denotes small-molecule
T9733 48-51 DT denotes the
T9732 38-47 VB denotes validated
T9731 30-37 RB denotes further
T9730 24-29 NN denotes siRNA
T9729 18-23 VB denotes using
T9728 13-17 NN denotes mTOR
T9727 10-12 IN denotes of
T9726 0-9 NN denotes Knockdown
R6239 T9726 T9727 arg1Of Knockdown,of
R6240 T9726 T9729 arg1Of Knockdown,using
R6241 T9726 T9732 arg1Of Knockdown,validated
R6242 T9728 T9727 arg2Of mTOR,of
R6243 T9730 T9729 arg2Of siRNA,using
R6244 T9732 T9731 arg1Of validated,further
R6245 T9736 T9732 arg2Of data,validated
R6246 T9736 T9733 arg1Of data,the
R6247 T9736 T9734 arg1Of data,small-molecule
R6248 T9736 T9735 arg1Of data,inhibitor
R6249 T9736 T9737 arg1Of data,indicating
R6250 T9736 T9745 arg1Of data,protecting
R6251 T9736 T9752 arg1Of data,induced
R6252 T9737 T9744 arg1Of indicating,by
R6253 T9739 T9737 arg2Of role,indicating
R6254 T9739 T9738 arg1Of role,a
R6255 T9739 T9740 arg1Of role,for
R6256 T9739 T9742 arg1Of role,in
R6257 T9741 T9740 arg2Of mTOR,for
R6258 T9743 T9742 arg2Of necroptosis,in
R6259 T9745 T9744 arg2Of protecting,by
R6260 T9746 T9745 arg2Of cells,protecting
R6261 T9746 T9747 arg1Of cells,from
R6262 T9749 T9750 arg1Of zVAD.fmk,and
R6263 T9750 T9747 arg2Of and,from
R6264 T9750 T9748 arg1Of and,both
R6265 T9751 T9750 arg2Of TNFα,and
R6266 T9752 T9732 arg3Of induced,validated
R6267 T9753 T9752 arg2Of death,induced
R6268 T9753 T9754 arg1Of death,(
R6269 T9756 T9754 arg2Of 5D,(
R6270 T9756 T9755 arg1Of 5D,Fig.
R6271 T9757 T9754 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9214 167-171 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10298 104-108 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T10297 13-17 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T10300 167-171 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T9298 180-185 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T9270 112-123 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9249 112-123 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T9098 0-196 Sentence denotes Knockdown of mTOR using siRNA further validated the small-molecule inhibitor data indicating a role for mTOR in necroptosis by protecting cells from both zVAD.fmk and TNFα induced death (Fig. 5D).
T144 0-196 Sentence denotes Knockdown of mTOR using siRNA further validated the small-molecule inhibitor data indicating a role for mTOR in necroptosis by protecting cells from both zVAD.fmk and TNFα induced death (Fig. 5D).

simple1

Id Subject Object Predicate Lexical cue
T9350 167-171 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10188 167-171 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10475 167-171 Protein denotes TNFα
T10505 172-179 Positive_regulation denotes induced
R6784 T10475 T10505 themeOf TNFα,induced

DLUT931

Id Subject Object Predicate Lexical cue
T10331 167-171 Protein denotes TNFα
T10362 172-179 Positive_regulation denotes induced
R6713 T10331 T10362 themeOf TNFα,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10920 26-29 Protein denotes RNA
T10882 104-108 Protein denotes mTOR
T10857 187-190 Protein denotes Fig
T10848 13-17 Protein denotes mTOR
T10831 138-143 Entity denotes cells
T10821 67-76 Entity denotes inhibitor
T10820 167-171 Protein denotes TNFα
T10816 10-26 Entity denotes of mTOR using si
T10796 154-162 Entity denotes zVAD.fmk

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11323 195-196 . denotes .
T11322 194-195 -RRB- denotes )
T11321 192-194 NNP denotes 5D
T11320 187-191 NNP denotes Fig.
T11319 186-187 -LRB- denotes (
T11318 180-185 NN denotes death
T11317 172-179 VBD denotes induced
T11316 167-171 NNP denotes TNFα
T11315 163-166 CC denotes and
T11314 154-162 NNP denotes zVAD.fmk
T11313 149-153 DT denotes both
T11312 144-148 IN denotes from
T11311 138-143 NNS denotes cells
T11310 127-137 VBG denotes protecting
T11309 124-126 IN denotes by
T11308 112-123 NN denotes necroptosis
T11307 109-111 IN denotes in
T11306 104-108 NNP denotes mTOR
T11305 100-103 IN denotes for
T11304 95-99 NN denotes role
T11291 0-9 NNP denotes Knockdown
T11303 93-94 DT denotes a
T11302 82-92 VBG denotes indicating
T11301 77-81 NNS denotes data
T11300 67-76 NN denotes inhibitor
T11299 52-66 JJ denotes small-molecule
T11298 48-51 DT denotes the
T11297 38-47 VBD denotes validated
T11296 30-37 JJ denotes further
T11295 24-29 NNP denotes siRNA
T11294 18-23 VBG denotes using
T11293 13-17 NNP denotes mTOR
T11292 10-12 IN denotes of
R7328 T11291 T11297 nsubj Knockdown,validated
R7329 T11292 T11291 prep of,Knockdown
R7330 T11293 T11292 pobj mTOR,of
R7331 T11294 T11297 nsubj using,validated
R7332 T11295 T11296 compound siRNA,further
R7333 T11296 T11297 advmod further,validated
R7334 T11297 T11297 ROOT validated,validated
R7335 T11298 T11301 det the,data
R7336 T11299 T11301 amod small-molecule,data
R7337 T11300 T11301 compound inhibitor,data
R7338 T11301 T11297 dobj data,validated
R7339 T11302 T11301 acl indicating,data
R7340 T11303 T11304 det a,role
R7341 T11304 T11302 dobj role,indicating
R7342 T11305 T11304 prep for,role
R7343 T11306 T11305 pobj mTOR,for
R7344 T11307 T11304 prep in,role
R7345 T11308 T11307 pobj necroptosis,in
R7346 T11309 T11304 prep by,role
R7347 T11310 T11309 pcomp protecting,by
R7348 T11311 T11310 dobj cells,protecting
R7349 T11312 T11310 prep from,protecting
R7350 T11313 T11314 preconj both,zVAD.fmk
R7351 T11314 T11312 pobj zVAD.fmk,from
R7352 T11315 T11314 cc and,zVAD.fmk
R7353 T11316 T11314 conj TNFα,zVAD.fmk
R7354 T11317 T11297 conj induced,validated
R7355 T11318 T11317 dobj death,induced
R7356 T11319 T11321 punct (,5D
R7357 T11320 T11321 compound Fig.,5D
R7358 T11321 T11317 oprd 5D,induced
R7359 T11322 T11321 punct ),5D
R7360 T11323 T11297 punct .,validated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10580 0-9 Negative_regulation denotes Knockdown
T10579 167-171 Protein denotes TNFα
T10578 154-162 Protein denotes zVAD.fmk
T10577 104-108 Protein denotes mTOR
T10576 13-29 Protein denotes mTOR using siRNA
R6832 T10576 T10580 themeOf mTOR using siRNA,Knockdown

test3

Id Subject Object Predicate Lexical cue
T8980 167-171 Protein denotes TNFα
T9035 172-179 Positive_regulation denotes induced
T9034 167-171 Protein denotes TNFα
T9033 0-9 Negative_regulation denotes Knockdown