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PMC:3585731 / 21148-21888 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T30220 546-555 Negative_regulation denotes knockdown
T30219 440-450 Negative_regulation denotes inhibitors
T30218 616-620 Protein denotes TNFα
T30217 403-407 Protein denotes TNFα
T30216 250-254 Protein denotes bFGF
T30215 242-246 Protein denotes bFGF
T30214 142-146 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T30400 732-739 VB denotes plotted
T30399 728-731 VB denotes was
T30398 717-727 NN denotes average±SD
T30397 715-716 -COMMA- denotes ,
T30396 709-715 NN denotes graphs
T30395 705-708 DT denotes all
T30394 702-704 IN denotes In
T30393 689-700 NN denotes necroptosis
T30392 686-688 IN denotes of
T30391 675-685 NN denotes activation
T30390 669-674 IN denotes after
T30389 666-668 NN denotes hr
T30388 663-665 CD denotes 24
T30387 652-662 VB denotes determined
T30386 648-651 VB denotes was
T30385 638-647 NN denotes viability
T30384 633-637 NN denotes Cell
T30383 609-612 NN denotes fmk
T30382 607-609 CD denotes D.
T30381 604-607 IN denotes zVA
T30380 599-603 NN denotes with
T30379 597-599 CC denotes d
T30378 589-597 NN denotes r treate
T30377 585-589 IN denotes ot o
T30376 578-585 VB denotes tern bl
T30375 576-578 CC denotes es
T30374 572-576 NN denotes or w
T30373 565-572 JJ denotes ested f
T30372 562-565 IN denotes arv
T30371 553-562 VB denotes wn were h
T30370 549-553 VB denotes ckdo
T30369 540-549 NN denotes siRNA kno
T30368 535-540 NN denotes mTOR
T30367 530-534 NN denotes with
T30366 526-530 IN denotes lls
T30365 521-526 NN denotes 29 ce
T30364 517-521 NN denotes ) L9
T30363 516-517 -RRB- denotes D
T30362 515-516 NN denotes (
T30361 513-514 -LRB- denotes .
T30360 512-513 -RRB- denotes )
T30359 506-512 NN denotes PI-103
T30358 502-505 CC denotes and
T30357 494-501 NN denotes Torin-1
T30356 492-493 -COMMA- denotes ,
T30355 483-492 NN denotes rapamycin
T30354 482-483 -LRB- denotes (
T30353 477-481 NN denotes mTOR
T30352 473-476 CC denotes and
T30351 471-472 -RRB- denotes )
T30350 467-471 CD denotes VIII
T30349 462-465 NN denotes inh
T30348 458-461 NN denotes Akt
T30347 457-458 -LRB- denotes (
T30346 454-457 NN denotes Akt
T30345 451-453 IN denotes of
T30344 440-450 NN denotes inhibitors
T30343 437-439 IN denotes of
T30342 428-436 NN denotes presence
T30341 424-427 DT denotes the
T30340 421-423 IN denotes in
T30339 416-420 NN denotes cell
T30338 411-415 NN denotes L929
T30337 408-410 IN denotes in
T30336 403-407 NN denotes TNFα
T30335 400-402 CC denotes or
T30334 391-399 NN denotes zVAD.fmk
T30333 388-390 IN denotes by
T30332 380-387 VB denotes induced
T30331 376-379 VB denotes was
T30330 364-375 NN denotes Necroptosis
T30329 362-363 -RRB- denotes )
T30328 361-362 NN denotes C
T30327 360-361 -LRB- denotes (
T30326 348-359 NN denotes antibodies.
T30325 338-347 VB denotes indicated
T30324 334-337 DT denotes the
T30323 328-333 VB denotes using
T30322 319-327 NN denotes blotting
T30321 311-318 JJ denotes western
T30320 308-310 IN denotes by
T30319 299-307 VB denotes followed
T30318 297-298 -COMMA- denotes ,
T30317 293-297 NN denotes time
T30316 290-292 IN denotes of
T30315 282-289 NN denotes amounts
T30314 272-281 VB denotes indicated
T30313 268-271 DT denotes the
T30312 264-267 IN denotes for
T30311 250-263 NN denotes bFGF/zVAD.fmk
T30310 247-249 CC denotes or
T30309 242-246 NN denotes bFGF
T30308 237-241 IN denotes with
T30307 229-236 VB denotes treated
T30306 224-228 VB denotes were
T30305 214-223 NN denotes condition
T30304 209-213 JJ denotes free
T30303 203-208 NN denotes serum
T30302 197-202 IN denotes under
T30301 192-196 NN denotes Cell
T30300 190-191 -RRB- denotes )
T30299 189-190 NN denotes B
T30298 188-189 -LRB- denotes (
T30297 182-187 NN denotes blot.
T30296 174-181 JJ denotes western
T30295 170-173 IN denotes for
T30294 160-169 VB denotes harvested
T30293 156-159 CC denotes and
T30292 153-155 NN denotes hr
T30291 151-152 CD denotes 9
T30290 147-150 IN denotes for
T30289 142-146 NN denotes TNFα
T30288 139-141 CC denotes or
T30287 130-138 NN denotes zVAD.fmk
T30286 125-129 IN denotes with
T30285 117-124 VB denotes treated
T30284 112-116 VB denotes were
T30283 106-111 NN denotes cells
T30282 101-105 NN denotes L929
T30281 99-100 -RRB- denotes )
T30280 98-99 NN denotes A
T30279 97-98 -LRB- denotes (
T30278 84-95 NN denotes necroptosis
T30277 81-83 IN denotes of
T30276 70-80 NN denotes regulation
T30275 66-69 DT denotes the
T30274 63-65 TO denotes to
T30273 51-62 VB denotes contributes
T30272 44-50 NN denotes mTORC1
R20934 T30272 T30273 arg1Of mTORC1,contributes
R20935 T30273 T30274 arg1Of contributes,to
R20936 T30276 T30274 arg2Of regulation,to
R20937 T30276 T30275 arg1Of regulation,the
R20938 T30276 T30277 arg1Of regulation,of
R20939 T30278 T30277 arg2Of necroptosis,of
R20940 T30280 T30279 arg2Of A,(
R20941 T30281 T30279 arg3Of ),(
R20942 T30283 T30279 arg1Of cells,(
R20943 T30283 T30282 arg1Of cells,L929
R20944 T30283 T30284 arg1Of cells,were
R20945 T30283 T30285 arg2Of cells,treated
R20946 T30285 T30284 arg2Of treated,were
R20947 T30285 T30286 arg1Of treated,with
R20948 T30287 T30288 arg1Of zVAD.fmk,or
R20949 T30288 T30286 arg2Of or,with
R20950 T30288 T30290 arg1Of or,for
R20951 T30289 T30288 arg2Of TNFα,or
R20952 T30292 T30290 arg2Of hr,for
R20953 T30292 T30291 arg1Of hr,9
R20954 T30294 T30293 arg2Of harvested,and
R20955 T30294 T30295 arg1Of harvested,for
R20956 T30294 T30302 arg1Of harvested,under
R20957 T30299 T30298 arg2Of B,(
R20958 T30300 T30298 arg3Of ),(
R20959 T30301 T30295 arg2Of Cell,for
R20960 T30301 T30296 arg1Of Cell,western
R20961 T30301 T30297 arg1Of Cell,blot.
R20962 T30301 T30298 arg1Of Cell,(
R20963 T30305 T30302 arg2Of condition,under
R20964 T30305 T30303 arg1Of condition,serum
R20965 T30305 T30304 arg1Of condition,free
R20966 T30307 T30306 arg2Of treated,were
R20967 T30307 T30308 arg1Of treated,with
R20968 T30307 T30318 arg1Of treated,","
R20969 T30307 T30319 modOf treated,followed
R20970 T30309 T30310 arg1Of bFGF,or
R20971 T30310 T30308 arg2Of or,with
R20972 T30310 T30312 arg1Of or,for
R20973 T30311 T30310 arg2Of bFGF/zVAD.fmk,or
R20974 T30315 T30312 arg2Of amounts,for
R20975 T30315 T30313 arg1Of amounts,the
R20976 T30315 T30314 arg2Of amounts,indicated
R20977 T30315 T30316 arg1Of amounts,of
R20978 T30317 T30316 arg2Of time,of
R20979 T30322 T30319 arg1Of blotting,followed
R20980 T30322 T30320 arg2Of blotting,by
R20981 T30322 T30321 arg1Of blotting,western
R20982 T30326 T30323 arg2Of antibodies.,using
R20983 T30326 T30324 arg1Of antibodies.,the
R20984 T30326 T30325 arg2Of antibodies.,indicated
R20985 T30326 T30327 arg1Of antibodies.,(
R20986 T30328 T30327 arg2Of C,(
R20987 T30329 T30327 arg3Of ),(
R20988 T30330 T30331 arg1Of Necroptosis,was
R20989 T30330 T30332 arg2Of Necroptosis,induced
R20990 T30332 T30331 arg2Of induced,was
R20991 T30334 T30335 arg1Of zVAD.fmk,or
R20992 T30335 T30332 arg1Of or,induced
R20993 T30335 T30333 arg2Of or,by
R20994 T30335 T30337 arg1Of or,in
R20995 T30335 T30340 arg1Of or,in
R20996 T30336 T30335 arg2Of TNFα,or
R20997 T30339 T30337 arg2Of cell,in
R20998 T30339 T30338 arg1Of cell,L929
R20999 T30342 T30340 arg2Of presence,in
R21000 T30342 T30341 arg1Of presence,the
R21001 T30342 T30343 arg1Of presence,of
R21002 T30342 T30345 arg1Of presence,of
R21003 T30344 T30343 arg2Of inhibitors,of
R21004 T30346 T30345 arg2Of Akt,of
R21005 T30349 T30347 arg2Of inh,(
R21006 T30349 T30348 arg1Of inh,Akt
R21007 T30350 T30351 arg1Of VIII,)
R21008 T30350 T30352 arg1Of VIII,and
R21009 T30352 T30370 modOf and,ckdo
R21010 T30353 T30352 arg2Of mTOR,and
R21011 T30353 T30354 arg1Of mTOR,(
R21012 T30355 T30356 arg1Of rapamycin,","
R21013 T30356 T30358 arg1Of ",",and
R21014 T30357 T30356 arg2Of Torin-1,","
R21015 T30358 T30354 arg2Of and,(
R21016 T30359 T30358 arg2Of PI-103,and
R21017 T30360 T30354 arg3Of ),(
R21018 T30362 T30361 arg2Of (,.
R21019 T30363 T30361 arg3Of D,.
R21020 T30365 T30361 arg1Of 29 ce,.
R21021 T30365 T30364 arg1Of 29 ce,) L9
R21022 T30365 T30366 arg1Of 29 ce,lls
R21023 T30365 T30370 arg1Of 29 ce,ckdo
R21024 T30365 T30371 arg2Of 29 ce,wn were h
R21025 T30365 T30376 arg2Of 29 ce,tern bl
R21026 T30369 T30366 arg2Of siRNA kno,lls
R21027 T30369 T30367 arg1Of siRNA kno,with
R21028 T30369 T30368 arg1Of siRNA kno,mTOR
R21029 T30371 T30372 arg1Of wn were h,arv
R21030 T30371 T30375 arg1Of wn were h,es
R21031 T30374 T30372 arg2Of or w,arv
R21032 T30374 T30373 arg1Of or w,ested f
R21033 T30375 T30370 arg2Of es,ckdo
R21034 T30376 T30375 arg2Of tern bl,es
R21035 T30376 T30377 arg1Of tern bl,ot o
R21036 T30376 T30381 arg1Of tern bl,zVA
R21037 T30378 T30379 arg1Of r treate,d
R21038 T30379 T30377 arg2Of d ,ot o
R21039 T30380 T30379 arg2Of with,d
R21040 T30383 T30381 arg2Of fmk,zVA
R21041 T30383 T30382 arg1Of fmk,D.
R21042 T30385 T30384 arg1Of viability,Cell
R21043 T30385 T30386 arg1Of viability,was
R21044 T30385 T30387 arg2Of viability,determined
R21045 T30387 T30386 arg2Of determined,was
R21046 T30387 T30390 arg1Of determined,after
R21047 T30389 T30388 arg1Of hr,24
R21048 T30390 T30389 arg1Of after,hr
R21049 T30391 T30390 arg2Of activation,after
R21050 T30391 T30392 arg1Of activation,of
R21051 T30393 T30392 arg2Of necroptosis,of
R21052 T30396 T30394 arg2Of graphs,In
R21053 T30396 T30395 arg1Of graphs,all
R21054 T30398 T30399 arg1Of average±SD,was
R21055 T30398 T30400 arg2Of average±SD,plotted
R21056 T30400 T30394 arg1Of plotted,In
R21057 T30400 T30397 arg1Of plotted,","
R21058 T30400 T30399 arg2Of plotted,was

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T30248 616-620 Protein denotes TNFα
T30247 403-407 Protein denotes TNFα
T30246 250-254 Protein denotes bFGF
T30245 242-246 Protein denotes bFGF
T30244 142-146 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T30559 535-539 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T30558 477-481 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T30557 458-461 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T30556 454-457 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T30555 458-461 http://www.uniprot.org/uniprot/P31751 denotes Akt
T30554 454-457 http://www.uniprot.org/uniprot/P31751 denotes Akt
T30553 458-461 http://www.uniprot.org/uniprot/P31749 denotes Akt
T30552 454-457 http://www.uniprot.org/uniprot/P31749 denotes Akt
T30551 250-254 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T30550 242-246 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T30549 616-620 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30548 403-407 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30547 142-146 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T30233 203-208 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T30254 689-700 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T30253 84-95 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T30252 675-700 http://purl.obolibrary.org/obo/GO_0070266 denotes activation of necroptosis
T30251 84-95 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T30250 70-95 http://purl.obolibrary.org/obo/GO_0060544 denotes regulation of necroptosis
T30249 70-80 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-MF

Id Subject Object Predicate Lexical cue
T30255 348-358 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T30260 348-358 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T30259 633-637 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T30258 524-529 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T30257 106-111 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T30256 44-50 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T30261 348-358 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T30238 702-740 Sentence denotes In all graphs, average±SD was plotted.
T30237 633-701 Sentence denotes Cell viability was determined 24 hr after activation of necroptosis.
T30236 467-632 Sentence denotes VIII) and mTOR (rapamycin, Torin-1 and PI-103). (D) L929 cells with mTOR siRNA knockdown were harvested for western blot or treated with zVAD.fmk or TNFα for 24 hrs.
T30235 97-466 Sentence denotes (A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr and harvested for western blot. (B) Cell under serum free condition were treated with bFGF or bFGF/zVAD.fmk for the indicated amounts of time, followed by western blotting using the indicated antibodies. (C) Necroptosis was induced by zVAD.fmk or TNFα in L929 cell in the presence of inhibitors of Akt(Akt inh.
T30234 44-96 Sentence denotes mTORC1 contributes to the regulation of necroptosis.
T135 0-96 Sentence denotes 10.1371/journal.pone.0056576.g005 Figure 5 mTORC1 contributes to the regulation of necroptosis.
T136 97-466 Sentence denotes (A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr and harvested for western blot. (B) Cell under serum free condition were treated with bFGF or bFGF/zVAD.fmk for the indicated amounts of time, followed by western blotting using the indicated antibodies. (C) Necroptosis was induced by zVAD.fmk or TNFα in L929 cell in the presence of inhibitors of Akt(Akt inh.
T137 467-632 Sentence denotes VIII) and mTOR (rapamycin, Torin-1 and PI-103). (D) L929 cells with mTOR siRNA knockdown were harvested for western blot or treated with zVAD.fmk or TNFα for 24 hrs.
T138 633-701 Sentence denotes Cell viability was determined 24 hr after activation of necroptosis.
T139 702-740 Sentence denotes In all graphs, average±SD was plotted.

simple1

Id Subject Object Predicate Lexical cue
T30271 616-620 Protein denotes TNFα
T30270 403-407 Protein denotes TNFα
T30269 250-254 Protein denotes bFGF
T30268 242-246 Protein denotes bFGF
T30267 142-146 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T30546 616-620 Protein denotes TNFα
T30545 403-407 Protein denotes TNFα
T30544 250-254 Protein denotes bFGF
T30543 242-246 Protein denotes bFGF
T30542 142-146 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T30574 616-620 Protein denotes TNFα
T30573 403-407 Protein denotes TNFα
T30572 250-254 Protein denotes bFGF
T30571 242-246 Protein denotes bFGF
T30570 142-146 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T30564 616-620 Protein denotes TNFα
T30563 403-407 Protein denotes TNFα
T30562 250-254 Protein denotes bFGF
T30561 242-246 Protein denotes bFGF
T30560 142-146 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T30629 242-246 Protein denotes bFGF
T30628 604-612 Entity denotes zVAD.fmk
T30627 348-358 Entity denotes antibodies
T30626 616-631 Protein denotes TNFα for 24 hrs
T30625 391-399 Entity denotes zVAD.fmk
T30624 483-492 Entity denotes rapamycin
T30623 250-254 Protein denotes bFGF
T30622 535-539 Protein denotes mTOR
T30621 454-457 Protein denotes Akt
T30620 506-512 Entity denotes PI-103
T30619 477-513 Protein denotes mTOR (rapamycin, Torin-1 and PI-103)
T30618 45-50 Entity denotes TORC1
T30617 142-155 Protein denotes TNFα for 9 hr
T30616 192-223 Entity denotes Cell under serum free condition
T30615 519-555 Entity denotes L929 cells with mTOR siRNA knockdown
T30614 494-501 Entity denotes Torin-1
T30613 255-263 Entity denotes zVAD.fmk
T30612 467-471 Protein denotes VIII
T30611 130-138 Entity denotes zVAD.fmk
T30610 403-407 Protein denotes TNFα
T30609 458-461 Protein denotes Akt
T30608 440-450 Entity denotes inhibitors
T30607 625-631 Protein denotes 24 hrs
T30606 458-465 Entity denotes Akt inh
T30605 519-523 Entity denotes L929

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T30541 739-740 . denotes .
T30540 732-739 VBN denotes plotted
T30539 728-731 VBD denotes was
T30538 725-727 NNP denotes SD
T30537 724-725 NN denotes ±
T30536 717-724 JJ denotes average
T30535 715-716 , denotes ,
T30534 709-715 NNS denotes graphs
T30533 705-708 DT denotes all
T30532 702-704 IN denotes In
T30531 700-701 . denotes .
T30530 689-700 NN denotes necroptosis
T30529 686-688 IN denotes of
T30528 675-685 NN denotes activation
T30527 669-674 IN denotes after
T30526 666-668 NN denotes hr
T30525 663-665 CD denotes 24
T30524 652-662 VBN denotes determined
T30523 648-651 VBD denotes was
T30522 638-647 NN denotes viability
T30521 633-637 NNP denotes Cell
T30520 631-632 . denotes .
T30475 424-427 DT denotes the
T30474 421-423 IN denotes in
T30473 416-420 NN denotes cell
T30472 411-415 NNP denotes L929
T30471 408-410 IN denotes in
T30470 403-407 NNP denotes TNFα
T30469 400-402 CC denotes or
T30468 391-399 NNP denotes zVAD.fmk
T30467 388-390 IN denotes by
T30466 380-387 VBN denotes induced
T30465 376-379 VBD denotes was
T30464 364-375 NNP denotes Necroptosis
T30463 362-363 -RRB- denotes )
T30462 361-362 NNP denotes C
T30461 360-361 -LRB- denotes (
T30460 358-359 . denotes .
T30459 348-358 NNS denotes antibodies
T30458 338-347 VBN denotes indicated
T30457 334-337 DT denotes the
T30456 328-333 VBG denotes using
T30455 319-327 VBG denotes blotting
T30454 311-318 JJ denotes western
T30453 308-310 IN denotes by
T30452 299-307 VBN denotes followed
T30451 297-298 , denotes ,
T30450 293-297 NN denotes time
T30449 290-292 IN denotes of
T30448 282-289 NNS denotes amounts
T30447 272-281 JJ denotes indicated
T30446 268-271 DT denotes the
T30445 264-267 IN denotes for
T30444 260-263 NN denotes fmk
T30443 259-260 . denotes .
T30442 250-259 NNP denotes bFGF/zVAD
T30441 247-249 CC denotes or
T30440 242-246 NNP denotes bFGF
T30439 237-241 IN denotes with
T30438 229-236 VBN denotes treated
T30437 224-228 VBD denotes were
T30436 214-223 NN denotes condition
T30435 209-213 JJ denotes free
T30434 203-208 NN denotes serum
T30433 197-202 IN denotes under
T30432 192-196 NNP denotes Cell
T30431 190-191 -RRB- denotes )
T30430 189-190 NNP denotes B
T30429 188-189 -LRB- denotes (
T30428 186-187 . denotes .
T30427 182-186 NN denotes blot
T30426 174-181 JJ denotes western
T30425 170-173 IN denotes for
T30424 160-169 VBN denotes harvested
T30423 156-159 CC denotes and
T30422 153-155 NN denotes hr
T30421 151-152 CD denotes 9
T30420 147-150 IN denotes for
T30419 142-146 NNP denotes TNFα
T30418 139-141 CC denotes or
T30417 130-138 NNP denotes zVAD.fmk
T30416 125-129 IN denotes with
T30415 117-124 VBN denotes treated
T30414 112-116 VBD denotes were
T30413 106-111 NNS denotes cells
T30412 101-105 NNP denotes L929
T30411 99-100 -RRB- denotes )
T30410 98-99 NNP denotes A
T30409 97-98 -LRB- denotes (
T30408 95-96 . denotes .
T30407 84-95 NN denotes necroptosis
T30406 81-83 IN denotes of
T30405 70-80 NN denotes regulation
T30404 66-69 DT denotes the
T30403 63-65 TO denotes to
T30402 51-62 VBZ denotes contributes
T30401 44-50 JJ denotes mTORC1
T30519 628-631 NNS denotes hrs
T30518 625-627 CD denotes 24
T30517 621-624 IN denotes for
T30516 616-620 NNP denotes TNFα
T30515 613-615 CC denotes or
T30489 482-483 -LRB- denotes (
T30488 477-481 NNP denotes mTOR
T30487 473-476 CC denotes and
T30486 471-472 -RRB- denotes )
T30485 467-471 NNP denotes VIII
T30484 465-466 . denotes .
T30483 462-465 NN denotes inh
T30482 458-461 NNP denotes Akt
T30481 457-458 -LRB- denotes (
T30480 454-457 NNP denotes Akt
T30479 451-453 IN denotes of
T30478 440-450 NNS denotes inhibitors
T30477 437-439 IN denotes of
T30476 428-436 NN denotes presence
T30514 604-612 NNP denotes zVAD.fmk
T30513 599-603 IN denotes with
T30512 591-598 VBN denotes treated
T30511 588-590 CC denotes or
T30510 583-587 NN denotes blot
T30509 575-582 JJ denotes western
T30508 571-574 IN denotes for
T30507 561-570 VBN denotes harvested
T30506 556-560 VBD denotes were
T30505 546-555 NN denotes knockdown
T30504 540-545 NNP denotes siRNA
T30503 535-539 NNP denotes mTOR
T30502 530-534 IN denotes with
T30501 524-529 NNS denotes cells
T30500 519-523 NNP denotes L929
T30499 517-518 -RRB- denotes )
T30498 516-517 NNP denotes D
T30497 515-516 -LRB- denotes (
T30496 513-514 . denotes .
T30495 512-513 -RRB- denotes )
T30494 506-512 NNP denotes PI-103
T30493 502-505 CC denotes and
T30492 494-501 NNP denotes Torin-1
T30491 492-493 , denotes ,
T30490 483-492 NN denotes rapamycin
R21059 T30401 T30402 nsubj mTORC1,contributes
R21060 T30402 T30402 ROOT contributes,contributes
R21061 T30403 T30402 prep to,contributes
R21062 T30404 T30405 det the,regulation
R21063 T30405 T30403 pobj regulation,to
R21064 T30406 T30405 prep of,regulation
R21065 T30407 T30406 pobj necroptosis,of
R21066 T30408 T30402 punct .,contributes
R21067 T30409 T30415 punct (,treated
R21068 T30410 T30413 nmod A,cells
R21069 T30411 T30410 punct ),A
R21070 T30412 T30413 compound L929,cells
R21071 T30413 T30415 nsubjpass cells,treated
R21072 T30414 T30415 auxpass were,treated
R21073 T30415 T30415 ROOT treated,treated
R21074 T30416 T30415 prep with,treated
R21075 T30417 T30416 pobj zVAD.fmk,with
R21076 T30418 T30417 cc or,zVAD.fmk
R21077 T30419 T30417 conj TNFα,zVAD.fmk
R21078 T30420 T30415 prep for,treated
R21079 T30421 T30422 nummod 9,hr
R21080 T30422 T30420 pobj hr,for
R21081 T30423 T30415 cc and,treated
R21082 T30424 T30415 conj harvested,treated
R21083 T30425 T30424 prep for,harvested
R21084 T30426 T30427 amod western,blot
R21085 T30427 T30425 pobj blot,for
R21086 T30428 T30415 punct .,treated
R21087 T30429 T30432 punct (,Cell
R21088 T30430 T30432 nmod B,Cell
R21089 T30431 T30432 punct ),Cell
R21090 T30432 T30438 nsubjpass Cell,treated
R21091 T30433 T30432 prep under,Cell
R21092 T30434 T30436 amod serum,condition
R21093 T30435 T30436 amod free,condition
R21094 T30436 T30433 pobj condition,under
R21095 T30437 T30438 auxpass were,treated
R21096 T30438 T30438 ROOT treated,treated
R21097 T30439 T30438 prep with,treated
R21098 T30440 T30439 pobj bFGF,with
R21099 T30441 T30440 cc or,bFGF
R21100 T30442 T30440 conj bFGF/zVAD,bFGF
R21101 T30443 T30438 punct .,treated
R21102 T30444 T30444 ROOT fmk,fmk
R21103 T30445 T30444 prep for,fmk
R21104 T30446 T30448 det the,amounts
R21105 T30447 T30448 amod indicated,amounts
R21106 T30448 T30445 pobj amounts,for
R21107 T30449 T30448 prep of,amounts
R21108 T30450 T30449 pobj time,of
R21109 T30451 T30444 punct ",",fmk
R21110 T30452 T30444 acl followed,fmk
R21111 T30453 T30452 agent by,followed
R21112 T30454 T30455 amod western,blotting
R21113 T30455 T30453 pobj blotting,by
R21114 T30456 T30452 advcl using,followed
R21115 T30457 T30459 det the,antibodies
R21116 T30458 T30459 amod indicated,antibodies
R21117 T30459 T30456 dobj antibodies,using
R21118 T30460 T30444 punct .,fmk
R21119 T30461 T30464 punct (,Necroptosis
R21120 T30462 T30464 nmod C,Necroptosis
R21121 T30463 T30464 punct ),Necroptosis
R21122 T30464 T30466 nsubjpass Necroptosis,induced
R21123 T30465 T30466 auxpass was,induced
R21124 T30466 T30466 ROOT induced,induced
R21125 T30467 T30466 agent by,induced
R21126 T30468 T30467 pobj zVAD.fmk,by
R21127 T30469 T30468 cc or,zVAD.fmk
R21128 T30470 T30468 conj TNFα,zVAD.fmk
R21129 T30471 T30466 prep in,induced
R21130 T30472 T30473 compound L929,cell
R21131 T30473 T30471 pobj cell,in
R21132 T30474 T30473 prep in,cell
R21133 T30475 T30476 det the,presence
R21134 T30476 T30474 pobj presence,in
R21135 T30477 T30476 prep of,presence
R21136 T30478 T30477 pobj inhibitors,of
R21137 T30479 T30478 prep of,inhibitors
R21138 T30480 T30479 pobj Akt,of
R21139 T30481 T30483 punct (,inh
R21140 T30482 T30483 compound Akt,inh
R21141 T30483 T30480 appos inh,Akt
R21142 T30484 T30466 punct .,induced
R21143 T30485 T30485 ROOT VIII,VIII
R21144 T30486 T30485 punct ),VIII
R21145 T30487 T30485 cc and,VIII
R21146 T30488 T30485 conj mTOR,VIII
R21147 T30489 T30490 punct (,rapamycin
R21148 T30490 T30485 appos rapamycin,VIII
R21149 T30491 T30490 punct ",",rapamycin
R21150 T30492 T30490 conj Torin-1,rapamycin
R21151 T30493 T30492 cc and,Torin-1
R21152 T30494 T30492 conj PI-103,Torin-1
R21153 T30495 T30492 punct ),Torin-1
R21154 T30496 T30485 punct .,VIII
R21155 T30497 T30501 punct (,cells
R21156 T30498 T30501 compound D,cells
R21157 T30499 T30500 punct ),L929
R21158 T30500 T30501 compound L929,cells
R21159 T30501 T30507 nsubjpass cells,harvested
R21160 T30502 T30501 prep with,cells
R21161 T30503 T30505 compound mTOR,knockdown
R21162 T30504 T30505 compound siRNA,knockdown
R21163 T30505 T30502 pobj knockdown,with
R21164 T30506 T30507 auxpass were,harvested
R21165 T30507 T30507 ROOT harvested,harvested
R21166 T30508 T30507 prep for,harvested
R21167 T30509 T30510 amod western,blot
R21168 T30510 T30508 pobj blot,for
R21169 T30511 T30507 cc or,harvested
R21170 T30512 T30507 conj treated,harvested
R21171 T30513 T30512 prep with,treated
R21172 T30514 T30513 pobj zVAD.fmk,with
R21173 T30515 T30514 cc or,zVAD.fmk
R21174 T30516 T30514 conj TNFα,zVAD.fmk
R21175 T30517 T30512 prep for,treated
R21176 T30518 T30519 nummod 24,hrs
R21177 T30519 T30517 pobj hrs,for
R21178 T30520 T30507 punct .,harvested
R21179 T30521 T30522 compound Cell,viability
R21180 T30522 T30524 nsubjpass viability,determined
R21181 T30523 T30524 auxpass was,determined
R21182 T30524 T30524 ROOT determined,determined
R21183 T30525 T30526 nummod 24,hr
R21184 T30526 T30527 npadvmod hr,after
R21185 T30527 T30524 prep after,determined
R21186 T30528 T30527 pobj activation,after
R21187 T30529 T30528 prep of,activation
R21188 T30530 T30529 pobj necroptosis,of
R21189 T30531 T30524 punct .,determined
R21190 T30532 T30540 prep In,plotted
R21191 T30533 T30534 det all,graphs
R21192 T30534 T30532 pobj graphs,In
R21193 T30535 T30540 punct ",",plotted
R21194 T30536 T30537 amod average,±
R21195 T30537 T30538 compound ±,SD
R21196 T30538 T30540 nsubjpass SD,plotted
R21197 T30539 T30540 auxpass was,plotted
R21198 T30540 T30540 ROOT plotted,plotted
R21199 T30541 T30540 punct .,plotted

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T30589 546-555 Negative_regulation denotes knockdown
T30575 44-50 Protein denotes mTORC1
T30579 260-263 Protein denotes fmk
T30578 250-259 Protein denotes bFGF/zVAD
T30588 604-620 Protein denotes zVAD.fmk or TNFα
T30587 535-545 Protein denotes mTOR siRNA
T30586 440-450 Negative_regulation denotes inhibitors
T30585 440-450 Negative_regulation denotes inhibitors
T30584 440-450 Negative_regulation denotes inhibitors
T30583 477-481 Protein denotes mTOR
T30582 458-461 Protein denotes Akt
T30581 454-457 Protein denotes Akt
T30580 391-407 Protein denotes zVAD.fmk or TNFα
T30577 242-246 Protein denotes bFGF
T30576 130-146 Protein denotes zVAD.fmk or TNFα
R21200 T30581 T30584 themeOf Akt,inhibitors
R21201 T30582 T30585 themeOf Akt,inhibitors
R21202 T30583 T30586 themeOf mTOR,inhibitors
R21203 T30587 T30589 themeOf mTOR siRNA,knockdown

test3

Id Subject Object Predicate Lexical cue
T30232 616-620 Protein denotes TNFα
T30231 440-450 Negative_regulation denotes inhibitors
T30230 403-407 Protein denotes TNFα
T30229 380-387 Positive_regulation denotes induced
T30228 250-254 Protein denotes bFGF
T30227 242-246 Protein denotes bFGF
T30226 142-146 Protein denotes TNFα
T30225 616-620 Protein denotes TNFα
T30224 403-407 Protein denotes TNFα
T30223 250-254 Protein denotes bFGF
T30222 242-246 Protein denotes bFGF
T30221 142-146 Protein denotes TNFα
R20933 T30231 T30229 causeOf inhibitors,induced