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PMC:3585731 / 207-493 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T14 268-272 Protein denotes RIP1
T13 236-266 Protein denotes receptor interacting protein-1
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T215 282-284 PRP denotes We
T214 274-280 NN denotes kinase
T213 272-273 -RRB- denotes )
T212 268-272 NN denotes RIP1
T211 267-268 -LRB- denotes (
T210 257-266 NN denotes protein-1
T209 245-256 NN denotes interacting
T208 236-244 NN denotes receptor
T207 227-235 NN denotes mediator
T206 215-226 NN denotes necroptosis
T205 211-214 DT denotes the
T204 208-210 IN denotes by
T203 197-207 VB denotes controlled
T202 186-196 NN denotes mechanisms
T201 176-185 NN denotes signaling
T200 172-175 DT denotes the
T199 159-171 VB denotes investigated
T198 156-158 PRP denotes we
T197 154-155 -COMMA- denotes ,
T196 150-154 NN denotes work
T195 145-149 DT denotes this
T194 142-144 IN denotes In
T193 139-140 -RRB- denotes )
T192 135-139 NN denotes SIRS
T191 134-135 -LRB- denotes (
T190 125-133 NN denotes syndrome
T189 116-124 NN denotes response
T188 103-115 JJ denotes inflammatory
T187 94-102 JJ denotes systemic
T186 90-93 CC denotes and
T185 77-89 NN denotes inflammation
T184 66-76 JJ denotes intestinal
T183 56-65 VB denotes including
T182 47-55 NN denotes diseases
T181 39-46 JJ denotes various
T180 36-38 IN denotes of
T179 23-35 NN denotes pathogenesis
T178 19-22 DT denotes the
T177 16-18 IN denotes in
T176 5-15 VB denotes implicated
T175 0-4 VB denotes been
R38 T176 T175 arg2Of implicated,been
R39 T176 T177 arg1Of implicated,in
R40 T179 T177 arg2Of pathogenesis,in
R41 T179 T178 arg1Of pathogenesis,the
R42 T179 T180 arg1Of pathogenesis,of
R43 T182 T180 arg2Of diseases,of
R44 T182 T181 arg1Of diseases,various
R45 T182 T183 arg1Of diseases,including
R46 T185 T184 arg1Of inflammation,intestinal
R47 T185 T186 arg1Of inflammation,and
R48 T186 T183 arg2Of and,including
R49 T190 T186 arg2Of syndrome,and
R50 T190 T187 arg1Of syndrome,systemic
R51 T190 T188 arg1Of syndrome,inflammatory
R52 T190 T189 arg1Of syndrome,response
R53 T190 T191 arg1Of syndrome,(
R54 T192 T191 arg2Of SIRS,(
R55 T193 T191 arg3Of ),(
R56 T196 T194 arg2Of work,In
R57 T196 T195 arg1Of work,this
R58 T198 T199 arg1Of we,investigated
R59 T199 T194 arg1Of investigated,In
R60 T199 T197 arg1Of investigated,","
R61 T202 T199 arg2Of mechanisms,investigated
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 236-266 Protein denotes receptor interacting protein-1
T91 268-272 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 268-272 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

UBERON-AE

Id Subject Object Predicate Lexical cue
T58 66-76 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal

GO-BP

Id Subject Object Predicate Lexical cue
T127 176-185 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T126 103-124 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T125 77-89 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T124 23-35 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T109 215-226 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T101 215-226 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T62 142-281 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T5 142-281 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.

simple1

Id Subject Object Predicate Lexical cue
T145 236-266 Protein denotes receptor interacting protein-1
T146 268-272 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 236-266 Protein denotes receptor interacting protein-1
T356 268-272 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 236-266 Protein denotes receptor interacting protein-1
T444 268-272 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T412 236-266 Protein denotes receptor interacting protein-1
T413 268-272 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T748 208-280 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 268-272 Protein denotes RIP1
T736 236-273 Protein denotes receptor interacting protein-1 (RIP1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T533 156-158 PRP denotes we
T532 154-155 , denotes ,
T531 150-154 NN denotes work
T530 145-149 DT denotes this
T529 142-144 IN denotes In
T528 140-141 . denotes .
T527 139-140 -RRB- denotes )
T526 135-139 NNP denotes SIRS
T525 134-135 -LRB- denotes (
T524 125-133 NN denotes syndrome
T523 116-124 NN denotes response
T522 103-115 JJ denotes inflammatory
T521 94-102 JJ denotes systemic
T520 90-93 CC denotes and
T519 77-89 NN denotes inflammation
T518 66-76 JJ denotes intestinal
T517 56-65 VBG denotes including
T516 47-55 NNS denotes diseases
T515 39-46 JJ denotes various
T514 36-38 IN denotes of
T513 23-35 NN denotes pathogenesis
T512 19-22 DT denotes the
T511 16-18 IN denotes in
T510 5-15 VBN denotes implicated
T509 0-4 VBN denotes been
T551 282-284 PRP denotes We
T550 280-281 . denotes .
T549 274-280 NN denotes kinase
T548 272-273 -RRB- denotes )
T547 268-272 CD denotes RIP1
T546 267-268 -LRB- denotes (
T545 257-266 NN denotes protein-1
T544 245-256 VBG denotes interacting
T543 236-244 NN denotes receptor
T542 227-235 NN denotes mediator
T541 215-226 NN denotes necroptosis
T540 211-214 DT denotes the
T539 208-210 IN denotes by
T538 197-207 VBN denotes controlled
T537 186-196 NNS denotes mechanisms
T536 176-185 VBG denotes signaling
T535 172-175 DT denotes the
T534 159-171 VBD denotes investigated
R249 T509 T510 auxpass been,implicated
R251 T511 T510 prep in,implicated
R252 T512 T513 det the,pathogenesis
R253 T513 T511 pobj pathogenesis,in
R254 T514 T513 prep of,pathogenesis
R255 T515 T516 amod various,diseases
R256 T516 T514 pobj diseases,of
R257 T517 T516 prep including,diseases
R258 T518 T519 amod intestinal,inflammation
R259 T519 T517 pobj inflammation,including
R260 T520 T519 cc and,inflammation
R261 T521 T524 amod systemic,syndrome
R262 T522 T523 amod inflammatory,response
R263 T523 T524 compound response,syndrome
R264 T524 T519 conj syndrome,inflammation
R265 T525 T524 punct (,syndrome
R266 T526 T524 appos SIRS,syndrome
R267 T527 T524 punct ),syndrome
R269 T529 T534 prep In,investigated
R270 T530 T531 det this,work
R271 T531 T529 pobj work,In
R272 T532 T534 punct ",",investigated
R273 T533 T534 nsubj we,investigated
R274 T534 T534 ROOT investigated,investigated
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R277 T537 T534 dobj mechanisms,investigated
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R290 T550 T534 punct .,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T465 197-207 Regulation denotes controlled
T464 197-207 Regulation denotes controlled
T463 268-272 Protein denotes RIP1
T462 227-266 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled

test3

Id Subject Object Predicate Lexical cue
T45 268-272 Protein denotes RIP1
T44 236-266 Protein denotes receptor interacting protein-1
T43 197-207 Regulation denotes controlled
T32 268-272 Protein denotes RIP1
T31 236-266 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1