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PMC:3585731 / 20614-20846 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8896 15-21 Protein denotes pFoxO1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9540 15-21 NN denotes pFoxO1
T9539 12-14 IN denotes of
T9538 7-11 NN denotes case
T9537 3-6 DT denotes the
T9536 0-2 IN denotes In
T9575 220-231 NN denotes necroptosis
T9574 213-219 IN denotes during
T9573 207-212 NN denotes place
T9572 202-206 VB denotes take
T9571 196-201 NN denotes Thr24
T9570 193-195 TO denotes to
T9569 184-192 NN denotes addition
T9568 181-183 IN denotes in
T9567 174-180 NN denotes events
T9566 158-173 NN denotes phosphorylation
T9565 153-157 IN denotes that
T9564 142-152 VB denotes suggesting
T9563 140-141 -COMMA- denotes ,
T9562 139-140 -RRB- denotes )
T9561 138-139 NN denotes B
T9560 134-137 CC denotes and
T9559 131-133 NN denotes 5A
T9558 126-130 FW denotes Fig.
T9557 116-125 VB denotes comparing
T9556 111-115 FW denotes e.g.
T9555 110-111 -LRB- denotes (
T9554 100-109 NN denotes intensity
T9553 95-99 NN denotes band
T9552 92-94 IN denotes in
T9551 83-91 NN denotes increase
T9550 80-82 DT denotes an
T9549 75-79 IN denotes than
T9548 68-74 RB denotes rather
T9547 58-67 NN denotes migration
T9546 55-57 IN denotes in
T9545 49-54 NN denotes shift
T9544 47-48 DT denotes a
T9543 38-46 VB denotes observed
T9542 25-37 RB denotes occasionally
T9541 22-24 PRP denotes we
R6052 T9538 T9536 arg2Of case,In
R6053 T9538 T9537 arg1Of case,the
R6054 T9538 T9539 arg1Of case,of
R6055 T9540 T9539 arg2Of pFoxO1,of
R6056 T9541 T9543 arg1Of we,observed
R6057 T9543 T9536 arg1Of observed,In
R6058 T9543 T9542 arg1Of observed,occasionally
R6059 T9543 T9563 arg1Of observed,","
R6060 T9543 T9564 modOf observed,suggesting
R6061 T9545 T9544 arg1Of shift,a
R6062 T9545 T9546 arg1Of shift,in
R6063 T9545 T9549 arg1Of shift,than
R6064 T9547 T9546 arg2Of migration,in
R6065 T9549 T9543 arg2Of than,observed
R6066 T9549 T9548 arg1Of than,rather
R6067 T9551 T9549 arg2Of increase,than
R6068 T9551 T9550 arg1Of increase,an
R6069 T9551 T9552 arg1Of increase,in
R6070 T9554 T9552 arg2Of intensity,in
R6071 T9554 T9553 arg1Of intensity,band
R6072 T9554 T9555 arg1Of intensity,(
R6073 T9556 T9555 arg2Of e.g.,(
R6074 T9559 T9560 arg1Of 5A,and
R6075 T9560 T9556 arg2Of and,e.g.
R6076 T9560 T9557 arg1Of and,comparing
R6077 T9560 T9558 arg1Of and,Fig.
R6078 T9561 T9560 arg2Of B,and
R6079 T9562 T9555 arg3Of ),(
R6080 T9567 T9566 arg1Of events,phosphorylation
R6081 T9567 T9568 arg1Of events,in
R6082 T9567 T9572 arg1Of events,take
R6083 T9569 T9568 arg2Of addition,in
R6084 T9569 T9570 arg1Of addition,to
R6085 T9571 T9570 arg2Of Thr24,to
R6086 T9572 T9564 arg2Of take,suggesting
R6087 T9572 T9565 arg1Of take,that
R6088 T9572 T9574 arg1Of take,during
R6089 T9573 T9572 arg2Of place,take
R6090 T9575 T9574 arg2Of necroptosis,during

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9211 15-21 Protein denotes pFoxO1

GO-BP

Id Subject Object Predicate Lexical cue
T9287 158-173 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9265 220-231 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9244 220-231 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T9091 0-232 Sentence denotes In the case of pFoxO1 we occasionally observed a shift in migration rather than an increase in band intensity (e.g. comparing Fig. 5A and B), suggesting that phosphorylation events in addition to Thr24 take place during necroptosis.
T132 0-232 Sentence denotes In the case of pFoxO1 we occasionally observed a shift in migration rather than an increase in band intensity (e.g. comparing Fig. 5A and B), suggesting that phosphorylation events in addition to Thr24 take place during necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T9347 15-21 Protein denotes pFoxO1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10217 83-91 Positive_regulation denotes increase
T10185 15-21 Protein denotes pFoxO1
R6665 T10185 T10217 themeOf pFoxO1,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10472 15-21 Protein denotes pFoxO1
T10503 83-91 Positive_regulation denotes increase
R6782 T10472 T10503 themeOf pFoxO1,increase

DLUT931

Id Subject Object Predicate Lexical cue
T10328 15-21 Protein denotes pFoxO1
T10360 158-173 Phosphorylation denotes phosphorylation
R6711 T10328 T10360 themeOf pFoxO1,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10896 15-21 Protein denotes pFoxO1
T10884 126-129 Protein denotes Fig
T10840 196-201 Entity denotes Thr24

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11133 231-232 . denotes .
T11132 220-231 NN denotes necroptosis
T11131 213-219 IN denotes during
T11130 207-212 NN denotes place
T11129 202-206 VB denotes take
T11128 196-201 VB denotes Thr24
T11127 193-195 TO denotes to
T11126 184-192 NN denotes addition
T11125 181-183 IN denotes in
T11124 174-180 NNS denotes events
T11123 158-173 NN denotes phosphorylation
T11122 153-157 IN denotes that
T11121 142-152 VBG denotes suggesting
T11120 140-141 , denotes ,
T11119 139-140 -RRB- denotes )
T11118 138-139 NNP denotes B
T11117 134-137 CC denotes and
T11116 131-133 NNP denotes 5A
T11115 126-130 NNP denotes Fig.
T11114 116-125 VBG denotes comparing
T11113 111-115 FW denotes e.g.
T11112 110-111 -LRB- denotes (
T11111 100-109 NN denotes intensity
T11110 95-99 NN denotes band
T11109 92-94 IN denotes in
T11108 83-91 NN denotes increase
T11107 80-82 DT denotes an
T11106 75-79 IN denotes than
T11105 68-74 RB denotes rather
T11104 58-67 NN denotes migration
T11103 55-57 IN denotes in
T11102 49-54 NN denotes shift
T11101 47-48 DT denotes a
T11100 38-46 VBD denotes observed
T11099 25-37 RB denotes occasionally
T11098 22-24 PRP denotes we
T11097 15-21 NNP denotes pFoxO1
T11096 12-14 IN denotes of
T11095 7-11 NN denotes case
T11094 3-6 DT denotes the
T11093 0-2 IN denotes In
R7130 T11093 T11100 prep In,observed
R7131 T11094 T11095 det the,case
R7132 T11095 T11093 pobj case,In
R7133 T11096 T11095 prep of,case
R7135 T11098 T11100 nsubj we,observed
R7136 T11099 T11100 advmod occasionally,observed
R7137 T11100 T11100 ROOT observed,observed
R7138 T11101 T11102 det a,shift
R7139 T11102 T11100 dobj shift,observed
R7140 T11103 T11102 prep in,shift
R7141 T11104 T11103 pobj migration,in
R7142 T11105 T11106 advmod rather,than
R7143 T11106 T11104 prep than,migration
R7144 T11107 T11108 det an,increase
R7145 T11108 T11106 pobj increase,than
R7146 T11109 T11108 prep in,increase
R7147 T11110 T11111 compound band,intensity
R7148 T11111 T11109 pobj intensity,in
R7149 T11112 T11113 punct (,e.g.
R7150 T11113 T11102 appos e.g.,shift
R7151 T11114 T11113 acl comparing,e.g.
R7152 T11115 T11116 compound Fig.,5A
R7153 T11116 T11114 dobj 5A,comparing
R7154 T11117 T11116 cc and,5A
R7155 T11118 T11116 conj B,5A
R7156 T11119 T11116 punct ),5A
R7157 T11120 T11113 punct ",",e.g.
R7158 T11121 T11113 acl suggesting,e.g.
R7159 T11122 T11129 mark that,take
R7160 T11123 T11124 compound phosphorylation,events
R7161 T11124 T11129 nsubj events,take
R7162 T11125 T11124 prep in,events
R7163 T11126 T11125 pobj addition,in
R7164 T11127 T11129 aux to,take
R7165 T11128 T11129 nsubj Thr24,take
R7166 T11129 T11121 ccomp take,suggesting
R7167 T11130 T11129 dobj place,take
R7168 T11131 T11129 prep during,take
R7169 T11132 T11131 pobj necroptosis,during
R7170 T11133 T11100 punct .,observed
R7134 T11097 T11096 pobj pFoxO1,of

test3

Id Subject Object Predicate Lexical cue
T8977 15-21 Protein denotes pFoxO1
T9025 15-21 Protein denotes pFoxO1