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PMC:3585731 / 19907-21147 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8932 1022-1031 Negative_regulation denotes abrogated
T8931 989-998 Positive_regulation denotes increases
T8930 672-687 Phosphorylation denotes phosphorylation
T8929 656-664 Positive_regulation denotes increase
T8928 197-212 Phosphorylation denotes phosphorylation
T8927 181-189 Positive_regulation denotes increase
T8926 73-88 Phosphorylation denotes phosphorylation
T8925 54-62 Positive_regulation denotes increase
T8897 1217-1221 Protein denotes RIP1
T8896 722-728 Protein denotes pFoxO1
T8895 550-552 Protein denotes S6
T8894 525-531 Protein denotes p70S6K
T8893 522-523 Protein denotes β
T8892 515-521 Protein denotes GSK-3α
T8891 507-513 Protein denotes FoxO3a
T8890 452-456 Protein denotes MDM2
T8889 445-450 Protein denotes FoxO4
T8888 438-443 Protein denotes FoxO1
T8887 408-410 Protein denotes S6
T8886 399-405 Protein denotes p70S6K
T8885 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T8884 326-330 Protein denotes MDM2
T8883 309-324 Protein denotes double minute 2
R5799 T8883 T8928 themeOf double minute 2,phosphorylation
R5800 T8884 T8883 equivalentTo MDM2,double minute 2
R5801 T8885 T8883 equivalentTo p70 ribosomal protein S6 Kinase,double minute 2
R5802 T8887 T8928 themeOf S6,phosphorylation
R5815 T8926 T8925 themeOf phosphorylation,increase
R5816 T8928 T8927 themeOf phosphorylation,increase
R5817 T8930 T8929 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9628 1232-1239 NN denotes fashion
T9627 1222-1231 JJ denotes dependent
T9626 1217-1221 NN denotes RIP1
T9625 1215-1216 DT denotes a
T9624 1212-1214 IN denotes in
T9623 1206-1211 NN denotes death
T9622 1201-1205 NN denotes cell
T9621 1189-1200 JJ denotes necroptotic
T9620 1186-1188 IN denotes of
T9619 1180-1185 NN denotes onset
T9618 1176-1179 DT denotes the
T9617 1173-1175 IN denotes at
T9616 1163-1172 VB denotes activated
T9615 1160-1162 VB denotes is
T9614 1152-1159 NN denotes network
T9613 1142-1151 NN denotes signaling
T9612 1138-1141 NN denotes Akt
T9611 1126-1137 NN denotes “canonical”
T9610 1122-1125 DT denotes the
T9609 1119-1121 IN denotes of
T9608 1114-1118 NN denotes part
T9607 1102-1113 JJ denotes significant
T9606 1100-1101 DT denotes a
T9605 1095-1099 IN denotes that
T9604 1085-1094 VB denotes suggested
T9603 1080-1084 NN denotes data
T9602 1074-1079 DT denotes these
T9601 1072-1073 -COMMA- denotes ,
T9600 1065-1072 RB denotes Overall
T9599 1062-1063 -RRB- denotes )
T9598 1061-1062 NN denotes B
T9597 1059-1060 -COMMA- denotes ,
T9596 1056-1059 NNP denotes S5A
T9595 1051-1055 NNP denotes Fig.
T9594 1049-1050 -COMMA- denotes ,
T9593 1047-1049 NNP denotes 5A
T9592 1042-1046 NNP denotes Fig.
T9591 1041-1042 -LRB- denotes (
T9590 1035-1040 NN denotes Nec-1
T9589 1032-1034 IN denotes by
T9588 1022-1031 VB denotes abrogated
T9587 1017-1021 VB denotes were
T9586 1006-1016 NN denotes substrates
T9585 1002-1005 NN denotes Akt
T9584 999-1001 IN denotes in
T9583 989-998 NN denotes increases
T9582 966-988 JJ denotes necroptosis-associated
T9581 962-965 DT denotes the
T9580 956-961 NN denotes cases
T9579 952-955 DT denotes all
T9578 949-951 IN denotes in
T9577 947-948 -COMMA- denotes ,
T9576 940-947 RB denotes Notably
T9540 722-728 NN denotes pFoxO1
T9539 719-721 IN denotes of
T9538 714-718 NN denotes case
T9537 710-713 DT denotes the
T9536 707-709 IN denotes In
T9535 704-705 -RRB- denotes )
T9534 703-704 NN denotes B
T9533 701-702 -COMMA- denotes ,
T9532 698-701 NN denotes S5A
T9531 696-697 -COMMA- denotes ,
T9530 694-696 NN denotes 5B
T9529 689-693 NNP denotes Fig.
T9528 688-689 -LRB- denotes (
T9527 672-687 NN denotes phosphorylation
T9526 668-671 NN denotes Akt
T9525 665-667 IN denotes in
T9524 656-664 NN denotes increase
T9523 652-655 DT denotes the
T9522 641-651 VB denotes paralleled
T9521 633-640 NN denotes changes
T9520 617-632 NN denotes phosphorylation
T9519 613-616 DT denotes the
T9518 610-612 IN denotes of
T9517 603-609 NN denotes timing
T9516 599-602 DT denotes The
T9515 596-597 -RRB- denotes )
T9514 594-596 NN denotes 5A
T9513 589-593 NNP denotes Fig.
T9512 588-589 -LRB- denotes (
T9511 577-587 JJ denotes pronounced
T9510 572-576 RB denotes less
T9509 567-571 VB denotes were
T9508 559-566 NN denotes changes
T9507 555-558 DT denotes the
T9506 553-554 -COMMA- denotes ,
T9505 552-553 -RRB- denotes )
T9504 550-552 NN denotes S6
T9503 540-549 NN denotes substrate
T9502 536-539 PRP-DOLLAR- denotes its
T9501 532-535 CC denotes and
T9500 525-531 NN denotes p70S6K
T9499 523-524 -COMMA- denotes ,
T9498 515-523 NN denotes GSK-3α/β
T9497 513-514 -COMMA- denotes ,
T9496 507-513 NN denotes FoxO3a
T9495 506-507 -LRB- denotes (
T9494 500-505 NN denotes cases
T9493 494-499 JJ denotes other
T9492 491-493 IN denotes In
T9491 481-489 VB denotes observed
T9490 477-480 VB denotes was
T9489 468-476 NN denotes increase
T9488 461-467 JJ denotes robust
T9487 459-460 DT denotes a
T9486 457-458 -COMMA- denotes ,
T9485 456-457 -RRB- denotes )
T9484 452-456 NN denotes MDM2
T9483 450-451 -COMMA- denotes ,
T9482 445-450 NN denotes FoxO4
T9481 443-444 -COMMA- denotes ,
T9480 438-443 NN denotes FoxO1
T9479 437-438 -LRB- denotes (
T9478 431-436 NN denotes cases
T9477 426-430 DT denotes some
T9476 423-425 IN denotes In
T9475 420-421 -RRB- denotes )
T9474 418-420 NN denotes 5A
T9473 413-417 NN denotes Fig.
T9472 412-413 -LRB- denotes (
T9471 410-411 -RRB- denotes )
T9470 408-410 NN denotes S6
T9469 406-407 -COMMA- denotes ,
T9468 405-406 -RRB- denotes )
T9467 399-405 NN denotes p70S6K
T9466 398-399 -LRB- denotes (
T9465 391-397 NN denotes Kinase
T9464 388-390 NN denotes S6
T9463 380-387 NN denotes protein
T9462 370-379 JJ denotes ribosomal
T9461 366-369 NN denotes p70
T9460 365-366 -LRB- denotes (
T9459 355-364 NN denotes molecules
T9458 344-354 JJ denotes downstream
T9457 341-343 IN denotes as
T9456 336-340 RB denotes well
T9455 333-335 RB denotes as
T9454 331-332 -RRB- denotes )
T9453 330-331 -RRB- denotes )
T9452 326-330 NN denotes MDM2
T9451 325-326 -LRB- denotes (
T9450 323-324 CD denotes 2
T9449 316-322 JJ denotes minute
T9448 309-315 JJ denotes double
T9447 303-308 NN denotes mouse
T9446 299-302 CC denotes and
T9445 291-298 NN denotes kinases
T9444 285-290 NN denotes GSK-3
T9443 283-284 -COMMA- denotes ,
T9442 275-283 NN denotes proteins
T9441 273-274 -RRB- denotes )
T9440 269-273 NN denotes FoxO
T9439 268-269 -LRB- denotes (
T9438 266-267 NN denotes O
T9437 260-265 NN denotes class
T9436 256-259 NN denotes box
T9435 247-255 NN denotes Forkhead
T9434 246-247 -LRB- denotes (
T9433 235-245 NN denotes substrates
T9432 231-234 NN denotes Akt
T9431 225-230 VB denotes known
T9430 216-224 JJ denotes multiple
T9429 213-215 IN denotes of
T9428 197-212 NN denotes phosphorylation
T9427 193-196 DT denotes the
T9426 190-192 IN denotes in
T9425 181-189 NN denotes increase
T9424 178-180 DT denotes an
T9423 169-177 VB denotes observed
T9422 166-168 PRP denotes we
T9421 164-165 -COMMA- denotes ,
T9420 154-164 NN denotes conditions
T9419 142-153 JJ denotes necroptotic
T9418 136-141 IN denotes Under
T9417 126-134 NN denotes activity
T9416 119-125 NN denotes kinase
T9415 115-118 NN denotes Akt
T9414 112-114 IN denotes in
T9413 103-111 NN denotes increase
T9412 100-102 DT denotes an
T9411 97-99 IN denotes in
T9410 89-96 VB denotes results
T9409 73-88 NN denotes phosphorylation
T9408 66-72 NN denotes Thr308
T9407 63-65 IN denotes in
T9406 54-62 NN denotes increase
T9405 31-53 JJ denotes necroptosis-associated
T9404 27-30 DT denotes the
T9403 19-26 IN denotes whether
T9402 8-18 VB denotes determined
T9401 3-7 RB denotes next
T9400 0-2 PRP denotes We
T9575 927-938 NN denotes necroptosis
T9574 920-926 IN denotes during
T9573 914-919 NN denotes place
T9572 909-913 VB denotes take
T9571 903-908 NN denotes Thr24
T9570 900-902 TO denotes to
T9569 891-899 NN denotes addition
T9568 888-890 IN denotes in
T9567 881-887 NN denotes events
T9566 865-880 NN denotes phosphorylation
T9565 860-864 IN denotes that
T9564 849-859 VB denotes suggesting
T9563 847-848 -COMMA- denotes ,
T9562 846-847 -RRB- denotes )
T9561 845-846 NN denotes B
T9560 841-844 CC denotes and
T9559 838-840 NN denotes 5A
T9558 833-837 FW denotes Fig.
T9557 823-832 VB denotes comparing
T9556 818-822 FW denotes e.g.
T9555 817-818 -LRB- denotes (
T9554 807-816 NN denotes intensity
T9553 802-806 NN denotes band
T9552 799-801 IN denotes in
T9551 790-798 NN denotes increase
T9550 787-789 DT denotes an
T9549 782-786 IN denotes than
T9548 775-781 RB denotes rather
T9547 765-774 NN denotes migration
T9546 762-764 IN denotes in
T9545 756-761 NN denotes shift
T9544 754-755 DT denotes a
T9543 745-753 VB denotes observed
T9542 732-744 RB denotes occasionally
T9541 729-731 PRP denotes we
R5919 T9400 T9402 arg1Of We,determined
R5920 T9402 T9401 arg1Of determined,next
R5921 T9406 T9404 arg1Of increase,the
R5922 T9406 T9405 arg1Of increase,necroptosis-associated
R5923 T9406 T9407 arg1Of increase,in
R5924 T9406 T9410 arg1Of increase,results
R5925 T9409 T9407 arg2Of phosphorylation,in
R5926 T9409 T9408 arg1Of phosphorylation,Thr308
R5927 T9410 T9402 arg2Of results,determined
R5928 T9410 T9403 arg1Of results,whether
R5929 T9410 T9411 arg1Of results,in
R5930 T9413 T9411 arg2Of increase,in
R5931 T9413 T9412 arg1Of increase,an
R5932 T9413 T9414 arg1Of increase,in
R5933 T9417 T9414 arg2Of activity,in
R5934 T9417 T9415 arg1Of activity,Akt
R5935 T9417 T9416 arg1Of activity,kinase
R5936 T9420 T9418 arg2Of conditions,Under
R5937 T9420 T9419 arg1Of conditions,necroptotic
R5938 T9422 T9423 arg1Of we,observed
R5939 T9423 T9418 arg1Of observed,Under
R5940 T9423 T9421 arg1Of observed,","
R5941 T9425 T9423 arg2Of increase,observed
R5942 T9425 T9424 arg1Of increase,an
R5943 T9425 T9426 arg1Of increase,in
R5944 T9428 T9426 arg2Of phosphorylation,in
R5945 T9428 T9427 arg1Of phosphorylation,the
R5946 T9428 T9429 arg1Of phosphorylation,of
R5947 T9433 T9430 arg1Of substrates,multiple
R5948 T9433 T9431 arg2Of substrates,known
R5949 T9433 T9432 arg1Of substrates,Akt
R5950 T9433 T9434 arg1Of substrates,(
R5951 T9433 T9457 arg1Of substrates,as
R5952 T9440 T9439 arg2Of FoxO,(
R5953 T9441 T9439 arg3Of ),(
R5954 T9442 T9435 arg1Of proteins,Forkhead
R5955 T9442 T9436 arg1Of proteins,box
R5956 T9442 T9437 arg1Of proteins,class
R5957 T9442 T9438 arg1Of proteins,O
R5958 T9442 T9439 arg1Of proteins,(
R5959 T9442 T9443 arg1Of proteins,","
R5960 T9443 T9446 arg1Of ",",and
R5961 T9445 T9443 arg2Of kinases,","
R5962 T9445 T9444 arg1Of kinases,GSK-3
R5963 T9446 T9434 arg2Of and,(
R5964 T9449 T9448 arg1Of minute,double
R5965 T9450 T9446 arg2Of 2,and
R5966 T9450 T9447 arg1Of 2,mouse
R5967 T9450 T9449 arg1Of 2,minute
R5968 T9450 T9451 arg1Of 2,(
R5969 T9452 T9451 arg2Of MDM2,(
R5970 T9453 T9451 arg3Of ),(
R5971 T9454 T9434 arg3Of ),(
R5972 T9457 T9429 arg2Of as,of
R5973 T9457 T9455 arg1Of as,as
R5974 T9457 T9456 arg1Of as,well
R5975 T9459 T9457 arg2Of molecules,as
R5976 T9459 T9458 arg1Of molecules,downstream
R5977 T9459 T9460 arg1Of molecules,(
R5978 T9459 T9472 arg1Of molecules,(
R5979 T9465 T9460 arg2Of Kinase,(
R5980 T9465 T9461 arg1Of Kinase,p70
R5981 T9465 T9462 arg1Of Kinase,ribosomal
R5982 T9465 T9463 arg1Of Kinase,protein
R5983 T9465 T9464 arg1Of Kinase,S6
R5984 T9465 T9466 arg1Of Kinase,(
R5985 T9465 T9469 arg1Of Kinase,","
R5986 T9467 T9466 arg2Of p70S6K,(
R5987 T9468 T9466 arg3Of ),(
R5988 T9470 T9469 arg2Of S6,","
R5989 T9471 T9460 arg3Of ),(
R5990 T9474 T9472 arg2Of 5A,(
R5991 T9474 T9473 arg1Of 5A,Fig.
R5992 T9475 T9472 arg3Of ),(
R5993 T9478 T9476 arg2Of cases,In
R5994 T9478 T9477 arg1Of cases,some
R5995 T9478 T9479 arg1Of cases,(
R5996 T9480 T9479 arg2Of FoxO1,(
R5997 T9480 T9481 arg1Of FoxO1,","
R5998 T9480 T9483 arg1Of FoxO1,","
R5999 T9482 T9481 arg2Of FoxO4,","
R6000 T9484 T9483 arg2Of MDM2,","
R6001 T9485 T9479 arg3Of ),(
R6002 T9489 T9487 arg1Of increase,a
R6003 T9489 T9488 arg1Of increase,robust
R6004 T9489 T9490 arg1Of increase,was
R6005 T9489 T9491 arg2Of increase,observed
R6006 T9491 T9476 arg1Of observed,In
R6007 T9491 T9486 arg1Of observed,","
R6008 T9491 T9490 arg2Of observed,was
R6009 T9494 T9492 arg2Of cases,In
R6010 T9494 T9493 arg1Of cases,other
R6011 T9494 T9495 arg1Of cases,(
R6012 T9496 T9497 arg1Of FoxO3a,","
R6013 T9497 T9499 arg1Of ",",","
R6014 T9498 T9497 arg2Of GSK-3α/β,","
R6015 T9499 T9501 arg1Of ",",and
R6016 T9500 T9499 arg2Of p70S6K,","
R6017 T9501 T9495 arg2Of and,(
R6018 T9504 T9501 arg2Of S6,and
R6019 T9504 T9502 arg1Of S6,its
R6020 T9504 T9503 arg1Of S6,substrate
R6021 T9505 T9495 arg3Of ),(
R6022 T9508 T9507 arg1Of changes,the
R6023 T9508 T9509 arg1Of changes,were
R6024 T9508 T9511 arg1Of changes,pronounced
R6025 T9509 T9492 arg1Of were,In
R6026 T9509 T9506 arg1Of were,","
R6027 T9511 T9509 arg2Of pronounced,were
R6028 T9511 T9510 arg1Of pronounced,less
R6029 T9511 T9512 arg1Of pronounced,(
R6030 T9514 T9512 arg2Of 5A,(
R6031 T9514 T9513 arg1Of 5A,Fig.
R6032 T9515 T9512 arg3Of ),(
R6033 T9517 T9516 arg1Of timing,The
R6034 T9517 T9518 arg1Of timing,of
R6035 T9517 T9522 arg1Of timing,paralleled
R6036 T9521 T9518 arg2Of changes,of
R6037 T9521 T9519 arg1Of changes,the
R6038 T9521 T9520 arg1Of changes,phosphorylation
R6039 T9522 T9528 arg1Of paralleled,(
R6040 T9524 T9522 arg2Of increase,paralleled
R6041 T9524 T9523 arg1Of increase,the
R6042 T9524 T9525 arg1Of increase,in
R6043 T9527 T9525 arg2Of phosphorylation,in
R6044 T9527 T9526 arg1Of phosphorylation,Akt
R6045 T9530 T9528 arg2Of 5B,(
R6046 T9530 T9529 arg1Of 5B,Fig.
R6047 T9530 T9531 arg1Of 5B,","
R6048 T9530 T9533 arg1Of 5B,","
R6049 T9532 T9531 arg2Of S5A,","
R6050 T9534 T9533 arg2Of B,","
R6051 T9535 T9528 arg3Of ),(
R6052 T9538 T9536 arg2Of case,In
R6053 T9538 T9537 arg1Of case,the
R6054 T9538 T9539 arg1Of case,of
R6055 T9540 T9539 arg2Of pFoxO1,of
R6056 T9541 T9543 arg1Of we,observed
R6057 T9543 T9536 arg1Of observed,In
R6058 T9543 T9542 arg1Of observed,occasionally
R6059 T9543 T9563 arg1Of observed,","
R6060 T9543 T9564 modOf observed,suggesting
R6061 T9545 T9544 arg1Of shift,a
R6062 T9545 T9546 arg1Of shift,in
R6063 T9545 T9549 arg1Of shift,than
R6064 T9547 T9546 arg2Of migration,in
R6065 T9549 T9543 arg2Of than,observed
R6066 T9549 T9548 arg1Of than,rather
R6067 T9551 T9549 arg2Of increase,than
R6068 T9551 T9550 arg1Of increase,an
R6069 T9551 T9552 arg1Of increase,in
R6070 T9554 T9552 arg2Of intensity,in
R6071 T9554 T9553 arg1Of intensity,band
R6072 T9554 T9555 arg1Of intensity,(
R6073 T9556 T9555 arg2Of e.g.,(
R6074 T9559 T9560 arg1Of 5A,and
R6075 T9560 T9556 arg2Of and,e.g.
R6076 T9560 T9557 arg1Of and,comparing
R6077 T9560 T9558 arg1Of and,Fig.
R6078 T9561 T9560 arg2Of B,and
R6079 T9562 T9555 arg3Of ),(
R6080 T9567 T9566 arg1Of events,phosphorylation
R6081 T9567 T9568 arg1Of events,in
R6082 T9567 T9572 arg1Of events,take
R6083 T9569 T9568 arg2Of addition,in
R6084 T9569 T9570 arg1Of addition,to
R6085 T9571 T9570 arg2Of Thr24,to
R6086 T9572 T9564 arg2Of take,suggesting
R6087 T9572 T9565 arg1Of take,that
R6088 T9572 T9574 arg1Of take,during
R6089 T9573 T9572 arg2Of place,take
R6090 T9575 T9574 arg2Of necroptosis,during
R6091 T9580 T9578 arg2Of cases,in
R6092 T9580 T9579 arg1Of cases,all
R6093 T9583 T9581 arg1Of increases,the
R6094 T9583 T9582 arg1Of increases,necroptosis-associated
R6095 T9583 T9584 arg1Of increases,in
R6096 T9583 T9587 arg1Of increases,were
R6097 T9583 T9588 arg2Of increases,abrogated
R6098 T9586 T9584 arg2Of substrates,in
R6099 T9586 T9585 arg1Of substrates,Akt
R6100 T9588 T9576 arg1Of abrogated,Notably
R6101 T9588 T9577 arg1Of abrogated,","
R6102 T9588 T9578 arg1Of abrogated,in
R6103 T9588 T9587 arg2Of abrogated,were
R6104 T9590 T9588 arg1Of Nec-1,abrogated
R6105 T9590 T9589 arg2Of Nec-1,by
R6106 T9590 T9591 arg1Of Nec-1,(
R6107 T9593 T9591 arg2Of 5A,(
R6108 T9593 T9592 arg1Of 5A,Fig.
R6109 T9593 T9594 arg1Of 5A,","
R6110 T9596 T9594 arg2Of S5A,","
R6111 T9596 T9595 arg1Of S5A,Fig.
R6112 T9596 T9597 arg1Of S5A,","
R6113 T9598 T9597 arg2Of B,","
R6114 T9599 T9591 arg3Of ),(
R6115 T9603 T9602 arg1Of data,these
R6116 T9603 T9604 arg1Of data,suggested
R6117 T9604 T9600 arg1Of suggested,Overall
R6118 T9604 T9601 arg1Of suggested,","
R6119 T9608 T9606 arg1Of part,a
R6120 T9608 T9607 arg1Of part,significant
R6121 T9608 T9609 arg1Of part,of
R6122 T9608 T9615 arg1Of part,is
R6123 T9608 T9616 arg2Of part,activated
R6124 T9614 T9609 arg2Of network,of
R6125 T9614 T9610 arg1Of network,the
R6126 T9614 T9611 arg1Of network,“canonical”
R6127 T9614 T9612 arg1Of network,Akt
R6128 T9614 T9613 arg1Of network,signaling
R6129 T9616 T9604 arg2Of activated,suggested
R6130 T9616 T9605 arg1Of activated,that
R6131 T9616 T9615 arg2Of activated,is
R6132 T9616 T9617 arg1Of activated,at
R6133 T9616 T9624 arg1Of activated,in
R6134 T9619 T9617 arg2Of onset,at
R6135 T9619 T9618 arg1Of onset,the
R6136 T9619 T9620 arg1Of onset,of
R6137 T9623 T9620 arg2Of death,of
R6138 T9623 T9621 arg1Of death,necroptotic
R6139 T9623 T9622 arg1Of death,cell
R6140 T9627 T9626 arg1Of dependent,RIP1
R6141 T9628 T9624 arg2Of fashion,in
R6142 T9628 T9625 arg1Of fashion,a
R6143 T9628 T9627 arg1Of fashion,dependent

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T9193 525-531 Antecedent denotes p70S6K
T9192 536-539 Anaphor denotes its
R5906 T9192 T9193 boundBy its,p70S6K

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9212 1217-1221 Protein denotes RIP1
T9211 722-728 Protein denotes pFoxO1
T9210 550-552 Protein denotes S6
T9209 525-531 Protein denotes p70S6K
T9208 522-523 Protein denotes β
T9207 515-521 Protein denotes GSK-3α
T9206 507-513 Protein denotes FoxO3a
T9205 452-456 Protein denotes MDM2
T9204 445-450 Protein denotes FoxO4
T9203 438-443 Protein denotes FoxO1
T9202 408-410 Protein denotes S6
T9201 399-405 Protein denotes p70S6K
T9200 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T9199 326-330 Protein denotes MDM2
T9198 309-324 Protein denotes double minute 2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10248 115-118 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10266 1138-1141 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10265 1002-1005 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10264 668-671 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10263 231-234 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10262 115-118 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10252 1138-1141 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10251 1002-1005 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10250 668-671 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10249 231-234 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10289 1217-1221 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T10280 1138-1141 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10279 1002-1005 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10278 668-671 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10277 231-234 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T10276 115-118 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T9297 1206-1211 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T9295 1201-1211 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T9293 1142-1151 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T9291 515-518 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T9290 285-288 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T9289 119-134 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T9287 865-880 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9286 672-687 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9285 617-632 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9284 197-212 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9283 73-88 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9266 966-977 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9265 927-938 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9264 31-42 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T9245 966-977 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T9244 927-938 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T9243 31-42 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T9317 370-387 http://purl.obolibrary.org/obo/GO_0003735 denotes ribosomal protein
T9315 515-518 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T9314 285-288 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T9313 119-134 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-CC

Id Subject Object Predicate Lexical cue
T9322 1201-1205 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T9093 1065-1240 Sentence denotes Overall, these data suggested that a significant part of the “canonical” Akt signaling network is activated at the onset of necroptotic cell death in a RIP1 dependent fashion.
T9092 940-1064 Sentence denotes Notably, in all cases the necroptosis-associated increases in Akt substrates were abrogated by Nec-1 (Fig. 5A, Fig. S5A, B).
T9091 707-939 Sentence denotes In the case of pFoxO1 we occasionally observed a shift in migration rather than an increase in band intensity (e.g. comparing Fig. 5A and B), suggesting that phosphorylation events in addition to Thr24 take place during necroptosis.
T9090 599-706 Sentence denotes The timing of the phosphorylation changes paralleled the increase in Akt phosphorylation (Fig. 5B, S5A, B).
T9089 491-598 Sentence denotes In other cases (FoxO3a, GSK-3α/β, p70S6K and its substrate S6), the changes were less pronounced (Fig. 5A).
T9088 423-490 Sentence denotes In some cases (FoxO1, FoxO4, MDM2), a robust increase was observed.
T9087 136-422 Sentence denotes Under necroptotic conditions, we observed an increase in the phosphorylation of multiple known Akt substrates (Forkhead box class O (FoxO) proteins, GSK-3 kinases and mouse double minute 2 (MDM2)) as well as downstream molecules (p70 ribosomal protein S6 Kinase (p70S6K), S6) (Fig. 5A).
T9086 0-135 Sentence denotes We next determined whether the necroptosis-associated increase in Thr308 phosphorylation results in an increase in Akt kinase activity.
T127 0-135 Sentence denotes We next determined whether the necroptosis-associated increase in Thr308 phosphorylation results in an increase in Akt kinase activity.
T128 136-422 Sentence denotes Under necroptotic conditions, we observed an increase in the phosphorylation of multiple known Akt substrates (Forkhead box class O (FoxO) proteins, GSK-3 kinases and mouse double minute 2 (MDM2)) as well as downstream molecules (p70 ribosomal protein S6 Kinase (p70S6K), S6) (Fig. 5A).
T129 423-490 Sentence denotes In some cases (FoxO1, FoxO4, MDM2), a robust increase was observed.
T130 491-598 Sentence denotes In other cases (FoxO3a, GSK-3α/β, p70S6K and its substrate S6), the changes were less pronounced (Fig. 5A).
T131 599-706 Sentence denotes The timing of the phosphorylation changes paralleled the increase in Akt phosphorylation (Fig. 5B, S5A, B).
T132 707-939 Sentence denotes In the case of pFoxO1 we occasionally observed a shift in migration rather than an increase in band intensity (e.g. comparing Fig. 5A and B), suggesting that phosphorylation events in addition to Thr24 take place during necroptosis.
T133 940-1064 Sentence denotes Notably, in all cases the necroptosis-associated increases in Akt substrates were abrogated by Nec-1 (Fig. 5A, Fig. S5A, B).
T134 1065-1240 Sentence denotes Overall, these data suggested that a significant part of the “canonical” Akt signaling network is activated at the onset of necroptotic cell death in a RIP1 dependent fashion.

simple1

Id Subject Object Predicate Lexical cue
T9348 1217-1221 Protein denotes RIP1
T9347 722-728 Protein denotes pFoxO1
T9346 550-552 Protein denotes S6
T9345 525-531 Protein denotes p70S6K
T9344 522-523 Protein denotes β
T9343 515-521 Protein denotes GSK-3α
T9342 507-513 Protein denotes FoxO3a
T9341 452-456 Protein denotes MDM2
T9340 445-450 Protein denotes FoxO4
T9339 438-443 Protein denotes FoxO1
T9338 408-410 Protein denotes S6
T9337 399-405 Protein denotes p70S6K
T9336 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T9335 326-330 Protein denotes MDM2
T9334 309-324 Protein denotes double minute 2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10217 790-798 Positive_regulation denotes increase
T10216 468-476 Positive_regulation denotes increase
T10215 181-189 Positive_regulation denotes increase
T10214 197-212 Phosphorylation denotes phosphorylation
T10186 1217-1221 Protein denotes RIP1
T10185 722-728 Protein denotes pFoxO1
T10184 507-513 Protein denotes FoxO3a
T10183 550-552 Protein denotes S6
T10182 525-531 Protein denotes p70S6K
T10181 522-523 Protein denotes β
T10180 515-521 Protein denotes GSK-3α
T10179 452-456 Protein denotes MDM2
T10178 445-450 Protein denotes FoxO4
T10177 438-443 Protein denotes FoxO1
T10176 408-410 Protein denotes S6
T10175 399-405 Protein denotes p70S6K
T10174 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T10173 326-330 Protein denotes MDM2
T10172 309-324 Protein denotes double minute 2
R6659 T10172 T10214 themeOf double minute 2,phosphorylation
R6660 T10173 T10214 themeOf MDM2,phosphorylation
R6661 T10174 T10214 themeOf p70 ribosomal protein S6 Kinase,phosphorylation
R6662 T10175 T10214 themeOf p70S6K,phosphorylation
R6663 T10176 T10214 themeOf S6,phosphorylation
R6664 T10178 T10216 themeOf FoxO4,increase
R6665 T10185 T10217 themeOf pFoxO1,increase
R6687 T10214 T10215 themeOf phosphorylation,increase
R6688 T10214 T10215 themeOf phosphorylation,increase
R6689 T10214 T10215 themeOf phosphorylation,increase
R6690 T10214 T10215 themeOf phosphorylation,increase
R6691 T10214 T10215 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10473 1217-1221 Protein denotes RIP1
T10472 722-728 Protein denotes pFoxO1
T10471 507-513 Protein denotes FoxO3a
T10470 550-552 Protein denotes S6
T10469 525-531 Protein denotes p70S6K
T10468 522-523 Protein denotes β
T10467 515-521 Protein denotes GSK-3α
T10466 452-456 Protein denotes MDM2
T10465 445-450 Protein denotes FoxO4
T10464 438-443 Protein denotes FoxO1
T10463 408-410 Protein denotes S6
T10462 399-405 Protein denotes p70S6K
T10461 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T10460 326-330 Protein denotes MDM2
T10459 309-324 Protein denotes double minute 2
T10503 790-798 Positive_regulation denotes increase
T10502 181-189 Positive_regulation denotes increase
T10501 197-212 Phosphorylation denotes phosphorylation
R6777 T10459 T10501 themeOf double minute 2,phosphorylation
R6778 T10460 T10501 themeOf MDM2,phosphorylation
R6779 T10461 T10501 themeOf p70 ribosomal protein S6 Kinase,phosphorylation
R6780 T10462 T10501 themeOf p70S6K,phosphorylation
R6781 T10463 T10501 themeOf S6,phosphorylation
R6782 T10472 T10503 themeOf pFoxO1,increase
R6802 T10501 T10502 themeOf phosphorylation,increase
R6803 T10501 T10502 themeOf phosphorylation,increase
R6804 T10501 T10502 themeOf phosphorylation,increase
R6805 T10501 T10502 themeOf phosphorylation,increase
R6806 T10501 T10502 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T10329 1217-1221 Protein denotes RIP1
T10328 722-728 Protein denotes pFoxO1
T10327 507-513 Protein denotes FoxO3a
T10326 550-552 Protein denotes S6
T10325 525-531 Protein denotes p70S6K
T10324 522-523 Protein denotes β
T10323 515-521 Protein denotes GSK-3α
T10322 452-456 Protein denotes MDM2
T10321 445-450 Protein denotes FoxO4
T10320 438-443 Protein denotes FoxO1
T10319 408-410 Protein denotes S6
T10318 399-405 Protein denotes p70S6K
T10317 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T10316 326-330 Protein denotes MDM2
T10315 309-324 Protein denotes double minute 2
T10358 181-189 Positive_regulation denotes increase
T10357 197-212 Phosphorylation denotes phosphorylation
T10360 865-880 Phosphorylation denotes phosphorylation
T10359 577-587 Positive_regulation denotes pronounced
R6701 T10315 T10357 themeOf double minute 2,phosphorylation
R6702 T10316 T10357 themeOf MDM2,phosphorylation
R6703 T10317 T10357 themeOf p70 ribosomal protein S6 Kinase,phosphorylation
R6704 T10318 T10357 themeOf p70S6K,phosphorylation
R6705 T10319 T10357 themeOf S6,phosphorylation
R6706 T10323 T10359 themeOf GSK-3α,pronounced
R6707 T10324 T10359 themeOf β,pronounced
R6708 T10325 T10359 themeOf p70S6K,pronounced
R6709 T10326 T10359 themeOf S6,pronounced
R6710 T10327 T10359 themeOf FoxO3a,pronounced
R6711 T10328 T10360 themeOf pFoxO1,phosphorylation
R6736 T10357 T10358 themeOf phosphorylation,increase
R6737 T10357 T10358 themeOf phosphorylation,increase
R6738 T10357 T10358 themeOf phosphorylation,increase
R6739 T10357 T10358 themeOf phosphorylation,increase
R6740 T10357 T10358 themeOf phosphorylation,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10939 97-134 Positive_regulation denotes in an increase in Akt kinase activity
T10932 27-88 Positive_regulation denotes the necroptosis-associated increase in Thr308 phosphorylation
T10928 136-245 Positive_regulation denotes Under necroptotic conditions, we observed an increase in the phosphorylation of multiple known Akt substrates
T10926 668-697 Phosphorylation denotes Akt phosphorylation (Fig. 5B,
T10921 366-410 Protein denotes p70 ribosomal protein S6 Kinase (p70S6K), S6
T10915 115-125 Protein denotes Akt kinase
T10911 445-450 Protein denotes FoxO4
T10910 285-290 Protein denotes GSK-3
T10907 1032-1050 Protein denotes by Nec-1 (Fig. 5A,
T10902 1002-1016 Entity denotes Akt substrates
T10899 668-671 Protein denotes Akt
T10896 722-728 Protein denotes pFoxO1
T10895 438-456 Protein denotes FoxO1, FoxO4, MDM2
T10893 515-523 Protein denotes GSK-3α/β
T10892 1002-1005 Protein denotes Akt
T10886 1217-1221 Protein denotes RIP1
T10884 833-836 Protein denotes Fig
T10883 275-332 Protein denotes proteins, GSK-3 kinases and mouse double minute 2 (MDM2))
T10881 115-118 Protein denotes Akt
T10879 507-513 Protein denotes FoxO3a
T10871 525-531 Protein denotes p70S6K
T10865 536-552 Protein denotes its substrate S6
T10863 438-451 Protein denotes FoxO1, FoxO4,
T10860 285-298 Protein denotes GSK-3 kinases
T10852 269-273 Entity denotes FoxO
T10847 344-411 Entity denotes downstream molecules (p70 ribosomal protein S6 Kinase (p70S6K), S6)
T10844 326-330 Protein denotes MDM2
T10840 903-908 Entity denotes Thr24
T10838 1138-1141 Protein denotes Akt
T10836 66-72 Entity denotes Thr308
T10827 366-407 Protein denotes p70 ribosomal protein S6 Kinase (p70S6K),
T10814 536-552 Entity denotes its substrate S6
T10813 231-234 Protein denotes Akt
T10812 1051-1054 Protein denotes Fig
T10810 515-523 Protein denotes GSK-3α/β
T10808 399-405 Protein denotes p70S6K
T10805 303-331 Protein denotes mouse double minute 2 (MDM2)
T10797 522-523 Protein denotes β
R6972 T10899 T10926 themeOf Akt,"Akt phosphorylation (Fig. 5B,"
R6975 T10915 T10939 themeOf Akt kinase,in an increase in Akt kinase activity

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11189 1239-1240 . denotes .
T11188 1232-1239 NN denotes fashion
T11187 1222-1231 JJ denotes dependent
T11186 1217-1221 NNP denotes RIP1
T11185 1215-1216 DT denotes a
T11184 1212-1214 IN denotes in
T11183 1206-1211 NN denotes death
T11182 1201-1205 NN denotes cell
T11181 1189-1200 JJ denotes necroptotic
T11180 1186-1188 IN denotes of
T11179 1180-1185 NN denotes onset
T11178 1176-1179 DT denotes the
T11177 1173-1175 IN denotes at
T11176 1163-1172 VBN denotes activated
T11175 1160-1162 VBZ denotes is
T11174 1152-1159 NN denotes network
T11173 1142-1151 VBG denotes signaling
T11172 1138-1141 NNP denotes Akt
T11171 1127-1136 JJ denotes canonical
T11170 1122-1125 DT denotes the
T11169 1119-1121 IN denotes of
T11168 1114-1118 NN denotes part
T11167 1102-1113 JJ denotes significant
T11166 1100-1101 DT denotes a
T11165 1095-1099 IN denotes that
T11164 1085-1094 VBD denotes suggested
T11163 1080-1084 NNS denotes data
T11162 1074-1079 DT denotes these
T11161 1072-1073 , denotes ,
T11160 1065-1072 RB denotes Overall
T11159 1063-1064 . denotes .
T11158 1062-1063 -RRB- denotes )
T11157 1061-1062 NNP denotes B
T11156 1059-1060 , denotes ,
T11155 1056-1059 CD denotes S5A
T11154 1054-1055 . denotes .
T11153 1051-1054 NNP denotes Fig
T11152 1049-1050 , denotes ,
T11151 1047-1049 NNP denotes 5A
T11150 1042-1046 NNP denotes Fig.
T11149 1041-1042 -LRB- denotes (
T11148 1035-1040 NNP denotes Nec-1
T11147 1032-1034 IN denotes by
T11146 1022-1031 VBN denotes abrogated
T11145 1017-1021 VBD denotes were
T11144 1006-1016 NNS denotes substrates
T11143 1002-1005 NNP denotes Akt
T11142 999-1001 IN denotes in
T11141 989-998 NNS denotes increases
T11140 966-988 JJ denotes necroptosis-associated
T11139 962-965 DT denotes the
T11138 956-961 NNS denotes cases
T11137 952-955 DT denotes all
T11136 949-951 IN denotes in
T11135 947-948 , denotes ,
T11134 940-947 RB denotes Notably
T11133 938-939 . denotes .
T11132 927-938 NN denotes necroptosis
T11131 920-926 IN denotes during
T11130 914-919 NN denotes place
T11129 909-913 VB denotes take
T11128 903-908 VB denotes Thr24
T11127 900-902 TO denotes to
T11126 891-899 NN denotes addition
T11125 888-890 IN denotes in
T11124 881-887 NNS denotes events
T11123 865-880 NN denotes phosphorylation
T11122 860-864 IN denotes that
T11121 849-859 VBG denotes suggesting
T11120 847-848 , denotes ,
T11119 846-847 -RRB- denotes )
T11118 845-846 NNP denotes B
T11117 841-844 CC denotes and
T11116 838-840 NNP denotes 5A
T11115 833-837 NNP denotes Fig.
T11114 823-832 VBG denotes comparing
T11113 818-822 FW denotes e.g.
T11112 817-818 -LRB- denotes (
T11111 807-816 NN denotes intensity
T11110 802-806 NN denotes band
T11109 799-801 IN denotes in
T11108 790-798 NN denotes increase
T11107 787-789 DT denotes an
T11106 782-786 IN denotes than
T11105 775-781 RB denotes rather
T11104 765-774 NN denotes migration
T11103 762-764 IN denotes in
T11102 756-761 NN denotes shift
T11101 754-755 DT denotes a
T11100 745-753 VBD denotes observed
T11099 732-744 RB denotes occasionally
T11098 729-731 PRP denotes we
T11097 722-728 NNP denotes pFoxO1
T11096 719-721 IN denotes of
T11095 714-718 NN denotes case
T11094 710-713 DT denotes the
T11093 707-709 IN denotes In
T11092 705-706 . denotes .
T11091 704-705 -RRB- denotes )
T11090 703-704 NNP denotes B
T11089 701-702 , denotes ,
T11088 698-701 NNP denotes S5A
T11087 696-697 , denotes ,
T11086 694-696 NNP denotes 5B
T11085 689-693 NNP denotes Fig.
T11084 688-689 -LRB- denotes (
T11083 672-687 NN denotes phosphorylation
T11082 668-671 NNP denotes Akt
T11081 665-667 IN denotes in
T11080 656-664 NN denotes increase
T11079 652-655 DT denotes the
T11078 641-651 VBD denotes paralleled
T11077 633-640 NNS denotes changes
T11076 617-632 NN denotes phosphorylation
T10951 3-7 IN denotes next
T10950 0-2 PRP denotes We
T11075 613-616 DT denotes the
T11074 610-612 IN denotes of
T11073 603-609 NN denotes timing
T11072 599-602 DT denotes The
T11071 597-598 . denotes .
T11070 596-597 -RRB- denotes )
T11069 594-596 NNP denotes 5A
T11068 589-593 NNP denotes Fig.
T11067 588-589 -LRB- denotes (
T11066 577-587 JJ denotes pronounced
T11065 572-576 RBR denotes less
T11064 567-571 VBD denotes were
T11063 559-566 NNS denotes changes
T11062 555-558 DT denotes the
T11061 553-554 , denotes ,
T11060 552-553 -RRB- denotes )
T11059 550-552 NNP denotes S6
T11058 540-549 JJ denotes substrate
T11057 536-539 PRP$ denotes its
T11056 532-535 CC denotes and
T11055 525-531 NNP denotes p70S6K
T11054 523-524 , denotes ,
T11053 522-523 NN denotes β
T11052 521-522 NN denotes /
T11051 515-521 JJ denotes GSK-3α
T11050 513-514 , denotes ,
T11049 507-513 NNS denotes FoxO3a
T11048 506-507 -LRB- denotes (
T11047 500-505 NNS denotes cases
T11046 494-499 JJ denotes other
T11045 491-493 IN denotes In
T11044 489-490 . denotes .
T11043 481-489 VBN denotes observed
T11042 477-480 VBD denotes was
T11041 468-476 NN denotes increase
T11040 461-467 JJ denotes robust
T11039 459-460 DT denotes a
T11038 457-458 , denotes ,
T11037 456-457 -RRB- denotes )
T11036 452-456 NNP denotes MDM2
T11035 450-451 , denotes ,
T11034 445-450 NNP denotes FoxO4
T11033 443-444 , denotes ,
T11032 438-443 NNP denotes FoxO1
T11031 437-438 -LRB- denotes (
T11030 431-436 NNS denotes cases
T11029 426-430 DT denotes some
T11028 423-425 IN denotes In
T11027 421-422 . denotes .
T11026 420-421 -RRB- denotes )
T11025 418-420 NNP denotes 5A
T11024 413-417 NNP denotes Fig.
T11023 412-413 -LRB- denotes (
T11022 410-411 -RRB- denotes )
T11021 408-410 NNP denotes S6
T11020 406-407 , denotes ,
T11019 405-406 -RRB- denotes )
T11018 399-405 NNP denotes p70S6K
T11017 398-399 -LRB- denotes (
T11016 391-397 NNP denotes Kinase
T11015 388-390 NNP denotes S6
T11014 380-387 NN denotes protein
T11013 370-379 JJ denotes ribosomal
T11012 366-369 CD denotes p70
T11011 365-366 -LRB- denotes (
T11010 355-364 NNS denotes molecules
T11009 344-354 JJ denotes downstream
T11008 341-343 IN denotes as
T11007 336-340 RB denotes well
T11006 333-335 RB denotes as
T11005 331-332 -RRB- denotes )
T11004 330-331 -RRB- denotes )
T11003 326-330 NN denotes MDM2
T11002 325-326 -LRB- denotes (
T11001 323-324 CD denotes 2
T11000 316-322 NN denotes minute
T10999 309-315 JJ denotes double
T10998 303-308 NN denotes mouse
T10997 299-302 CC denotes and
T10996 291-298 NNS denotes kinases
T10995 285-290 JJ denotes GSK-3
T10994 283-284 , denotes ,
T10993 275-283 NNS denotes proteins
T10992 273-274 -RRB- denotes )
T10991 269-273 NNP denotes FoxO
T10990 268-269 -LRB- denotes (
T10989 266-267 NNP denotes O
T10988 260-265 NN denotes class
T10987 256-259 NN denotes box
T10986 247-255 NNP denotes Forkhead
T10985 246-247 -LRB- denotes (
T10984 235-245 VBZ denotes substrates
T10983 231-234 NNP denotes Akt
T10982 225-230 VBN denotes known
T10981 216-224 JJ denotes multiple
T10980 213-215 IN denotes of
T10979 197-212 NN denotes phosphorylation
T10978 193-196 DT denotes the
T10977 190-192 IN denotes in
T10976 181-189 NN denotes increase
T10975 178-180 DT denotes an
T10974 169-177 VBD denotes observed
T10973 166-168 PRP denotes we
T10972 164-165 , denotes ,
T10971 154-164 NNS denotes conditions
T10970 142-153 JJ denotes necroptotic
T10969 136-141 IN denotes Under
T10968 134-135 . denotes .
T10967 126-134 NN denotes activity
T10966 119-125 NN denotes kinase
T10965 115-118 NNP denotes Akt
T10964 112-114 IN denotes in
T10963 103-111 NN denotes increase
T10962 100-102 DT denotes an
T10961 97-99 IN denotes in
T10960 89-96 NNS denotes results
T10959 73-88 NN denotes phosphorylation
T10958 66-72 CD denotes Thr308
T10957 63-65 IN denotes in
T10956 54-62 NN denotes increase
T10955 31-53 JJ denotes necroptosis-associated
T10954 27-30 DT denotes the
T10953 19-26 IN denotes whether
T10952 8-18 VBN denotes determined
R6987 T10950 T10952 nsubj We,determined
R6988 T10951 T10952 advmod next,determined
R6990 T10953 T10952 advmod whether,determined
R6991 T10954 T10956 det the,increase
R6992 T10955 T10956 amod necroptosis-associated,increase
R6993 T10956 T10953 pobj increase,whether
R6994 T10957 T10956 prep in,increase
R6995 T10958 T10960 nummod Thr308,results
R6996 T10959 T10960 compound phosphorylation,results
R6997 T10960 T10957 pobj results,in
R6998 T10961 T10956 prep in,increase
R6999 T10962 T10963 det an,increase
R7000 T10963 T10961 pobj increase,in
R7001 T10964 T10963 prep in,increase
R7002 T10965 T10967 compound Akt,activity
R7003 T10966 T10967 compound kinase,activity
R7004 T10967 T10964 pobj activity,in
R7006 T10969 T10974 prep Under,observed
R7007 T10970 T10971 amod necroptotic,conditions
R7008 T10971 T10969 pobj conditions,Under
R7009 T10972 T10974 punct ",",observed
R7010 T10973 T10974 nsubj we,observed
R7011 T10974 T10974 ROOT observed,observed
R7012 T10975 T10976 det an,increase
R7013 T10976 T10974 dobj increase,observed
R7014 T10977 T10976 prep in,increase
R7015 T10978 T10979 det the,phosphorylation
R7016 T10979 T10977 pobj phosphorylation,in
R7017 T10980 T10979 prep of,phosphorylation
R7018 T10981 T10984 amod multiple,substrates
R7019 T10982 T10984 amod known,substrates
R7020 T10983 T10984 compound Akt,substrates
R7021 T10984 T10980 pobj substrates,of
R7022 T10985 T10984 punct (,substrates
R7023 T10986 T10993 nmod Forkhead,proteins
R7024 T10987 T10988 compound box,class
R7025 T10988 T10993 nmod class,proteins
R7026 T10989 T10993 nmod O,proteins
R7027 T10990 T10991 punct (,FoxO
R7028 T10991 T10989 appos FoxO,O
R7029 T10992 T10993 punct ),proteins
R7030 T10993 T10984 appos proteins,substrates
R7031 T10994 T10993 punct ",",proteins
R7032 T10995 T10996 compound GSK-3,kinases
R7033 T10996 T10993 conj kinases,proteins
R7034 T10997 T10996 cc and,kinases
R7035 T10998 T10996 conj mouse,kinases
R7036 T10999 T11000 amod double,minute
R7037 T11000 T10984 appos minute,substrates
R7038 T11001 T11000 nummod 2,minute
R7039 T11002 T11003 punct (,MDM2
R7040 T11003 T11000 appos MDM2,minute
R7041 T11004 T10974 punct ),observed
R7042 T11005 T10974 punct ),observed
R7043 T11006 T11008 advmod as,as
R7044 T11007 T11008 advmod well,as
R7045 T11008 T10974 cc as,observed
R7046 T11009 T11010 amod downstream,molecules
R7047 T11010 T10974 conj molecules,observed
R7048 T11011 T11010 punct (,molecules
R7049 T11012 T11014 meta p70,protein
R7050 T11013 T11014 compound ribosomal,protein
R7051 T11014 T11010 appos protein,molecules
R7052 T11015 T11016 compound S6,Kinase
R7053 T11016 T11014 appos Kinase,protein
R7054 T11017 T11018 punct (,p70S6K
R7055 T11018 T11016 appos p70S6K,Kinase
R7056 T11019 T11018 punct ),p70S6K
R7057 T11020 T11016 punct ",",Kinase
R7058 T11021 T11016 appos S6,Kinase
R7059 T11022 T11016 punct ),Kinase
R7060 T11023 T11025 punct (,5A
R7061 T11024 T11025 compound Fig.,5A
R7062 T11025 T11016 appos 5A,Kinase
R7063 T11026 T11025 punct ),5A
R7064 T11027 T10974 punct .,observed
R7065 T11028 T11043 prep In,observed
R7066 T11029 T11030 det some,cases
R7067 T11030 T11028 pobj cases,In
R7068 T11031 T11043 punct (,observed
R7069 T11032 T11041 nmod FoxO1,increase
R7070 T11033 T11032 punct ",",FoxO1
R7071 T11034 T11032 conj FoxO4,FoxO1
R7072 T11035 T11034 punct ",",FoxO4
R7073 T11036 T11034 conj MDM2,FoxO4
R7074 T11037 T11034 punct ),FoxO4
R7075 T11038 T11034 punct ",",FoxO4
R7076 T11039 T11041 det a,increase
R7077 T11040 T11041 amod robust,increase
R7078 T11041 T11043 nsubjpass increase,observed
R7079 T11042 T11043 auxpass was,observed
R7080 T11043 T11043 ROOT observed,observed
R7081 T11044 T11043 punct .,observed
R7082 T11045 T11064 prep In,were
R7083 T11046 T11047 amod other,cases
R7084 T11047 T11045 pobj cases,In
R7085 T11048 T11053 punct (,β
R7086 T11049 T11053 nmod FoxO3a,β
R7087 T11050 T11049 punct ",",FoxO3a
R7088 T11051 T11053 amod GSK-3α,β
R7089 T11052 T11053 compound /,β
R7090 T11053 T11064 dep β,were
R7091 T11054 T11053 punct ",",β
R7092 T11055 T11053 conj p70S6K,β
R7093 T11056 T11055 cc and,p70S6K
R7094 T11057 T11058 poss its,substrate
R7095 T11058 T11055 conj substrate,p70S6K
R7096 T11059 T11058 appos S6,substrate
R7097 T11060 T11058 punct ),substrate
R7098 T11061 T11064 punct ",",were
R7099 T11062 T11063 det the,changes
R7100 T11063 T11064 nsubj changes,were
R7101 T11064 T11064 ROOT were,were
R7102 T11065 T11066 advmod less,pronounced
R7103 T11066 T11064 acomp pronounced,were
R7104 T11067 T11069 punct (,5A
R7105 T11068 T11069 compound Fig.,5A
R7106 T11069 T11069 ROOT 5A,5A
R7107 T11070 T11069 punct ),5A
R7108 T11071 T11064 punct .,were
R7109 T11072 T11073 det The,timing
R7110 T11073 T11078 nsubj timing,paralleled
R7111 T11074 T11073 prep of,timing
R7112 T11075 T11077 det the,changes
R7113 T11076 T11077 compound phosphorylation,changes
R7114 T11077 T11074 pobj changes,of
R7115 T11078 T11078 ROOT paralleled,paralleled
R7116 T11079 T11080 det the,increase
R7117 T11080 T11078 dobj increase,paralleled
R7118 T11081 T11080 prep in,increase
R7119 T11082 T11083 compound Akt,phosphorylation
R7120 T11083 T11081 pobj phosphorylation,in
R7121 T11084 T11086 punct (,5B
R7122 T11085 T11086 compound Fig.,5B
R7123 T11086 T11083 appos 5B,phosphorylation
R7124 T11087 T11086 punct ",",5B
R7125 T11088 T11086 conj S5A,5B
R7126 T11089 T11088 punct ",",S5A
R7127 T11090 T11088 conj B,S5A
R7128 T11091 T11086 punct ),5B
R7129 T11092 T11078 punct .,paralleled
R7130 T11093 T11100 prep In,observed
R7131 T11094 T11095 det the,case
R7132 T11095 T11093 pobj case,In
R7133 T11096 T11095 prep of,case
R7135 T11098 T11100 nsubj we,observed
R7136 T11099 T11100 advmod occasionally,observed
R7137 T11100 T11100 ROOT observed,observed
R7138 T11101 T11102 det a,shift
R7139 T11102 T11100 dobj shift,observed
R7140 T11103 T11102 prep in,shift
R7141 T11104 T11103 pobj migration,in
R7142 T11105 T11106 advmod rather,than
R7143 T11106 T11104 prep than,migration
R7144 T11107 T11108 det an,increase
R7145 T11108 T11106 pobj increase,than
R7146 T11109 T11108 prep in,increase
R7147 T11110 T11111 compound band,intensity
R7148 T11111 T11109 pobj intensity,in
R7149 T11112 T11113 punct (,e.g.
R7150 T11113 T11102 appos e.g.,shift
R7151 T11114 T11113 acl comparing,e.g.
R7152 T11115 T11116 compound Fig.,5A
R7153 T11116 T11114 dobj 5A,comparing
R7154 T11117 T11116 cc and,5A
R7155 T11118 T11116 conj B,5A
R7156 T11119 T11116 punct ),5A
R7157 T11120 T11113 punct ",",e.g.
R7158 T11121 T11113 acl suggesting,e.g.
R7159 T11122 T11129 mark that,take
R7160 T11123 T11124 compound phosphorylation,events
R7161 T11124 T11129 nsubj events,take
R7162 T11125 T11124 prep in,events
R7163 T11126 T11125 pobj addition,in
R7164 T11127 T11129 aux to,take
R7165 T11128 T11129 nsubj Thr24,take
R7166 T11129 T11121 ccomp take,suggesting
R7167 T11130 T11129 dobj place,take
R7168 T11131 T11129 prep during,take
R7169 T11132 T11131 pobj necroptosis,during
R7170 T11133 T11100 punct .,observed
R7171 T11134 T11146 advmod Notably,abrogated
R7172 T11135 T11146 punct ",",abrogated
R7173 T11136 T11146 prep in,abrogated
R7174 T11137 T11138 det all,cases
R7175 T11138 T11136 pobj cases,in
R7176 T11139 T11141 det the,increases
R7177 T11140 T11141 amod necroptosis-associated,increases
R7178 T11141 T11146 nsubjpass increases,abrogated
R7179 T11142 T11141 prep in,increases
R7180 T11143 T11144 compound Akt,substrates
R7181 T11144 T11142 pobj substrates,in
R7182 T11145 T11146 auxpass were,abrogated
R7183 T11146 T11146 ROOT abrogated,abrogated
R7184 T11147 T11146 agent by,abrogated
R7185 T11148 T11147 pobj Nec-1,by
R7186 T11149 T11151 punct (,5A
R7187 T11150 T11151 compound Fig.,5A
R7188 T11151 T11148 appos 5A,Nec-1
R7189 T11152 T11151 punct ",",5A
R7190 T11153 T11151 appos Fig,5A
R7191 T11154 T11146 punct .,abrogated
R7192 T11155 T11157 npadvmod S5A,B
R7193 T11156 T11157 punct ",",B
R7194 T11157 T11157 ROOT B,B
R7195 T11158 T11157 punct ),B
R7196 T11159 T11157 punct .,B
R7197 T11160 T11164 advmod Overall,suggested
R7198 T11161 T11164 punct ",",suggested
R7199 T11162 T11163 det these,data
R7200 T11163 T11164 nsubj data,suggested
R7201 T11164 T11164 ROOT suggested,suggested
R7202 T11165 T11176 mark that,activated
R7203 T11166 T11168 det a,part
R7204 T11167 T11168 amod significant,part
R7205 T11168 T11176 nsubjpass part,activated
R7206 T11169 T11168 prep of,part
R7207 T11170 T11174 det the,network
R7208 T11171 T11174 amod canonical,network
R7209 T11172 T11174 nmod Akt,network
R7210 T11173 T11174 amod signaling,network
R7211 T11174 T11169 pobj network,of
R7212 T11175 T11176 auxpass is,activated
R7213 T11176 T11164 ccomp activated,suggested
R7214 T11177 T11176 prep at,activated
R7215 T11178 T11179 det the,onset
R7216 T11179 T11177 pobj onset,at
R7217 T11180 T11179 prep of,onset
R7218 T11181 T11183 amod necroptotic,death
R7219 T11182 T11183 compound cell,death
R7220 T11183 T11180 pobj death,of
R7221 T11184 T11176 prep in,activated
R7222 T11185 T11188 det a,fashion
R7223 T11186 T11188 amod RIP1,fashion
R7224 T11187 T11188 amod dependent,fashion
R7225 T11188 T11184 pobj fashion,in
R7226 T11189 T11164 punct .,suggested
R7134 T11097 T11096 pobj pFoxO1,of

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10564 1217-1221 Protein denotes RIP1
T10563 1138-1141 Protein denotes Akt
T10562 1022-1031 Negative_regulation denotes abrogated
T10561 1022-1031 Negative_regulation denotes abrogated
T10560 989-998 Positive_regulation denotes increases
T10559 1056-1059 Protein denotes S5A
T10558 1051-1054 Protein denotes Fig
T10537 303-324 Protein denotes mouse double minute 2
T10536 285-298 Protein denotes GSK-3 kinases
T10535 247-283 Protein denotes Forkhead box class O (FoxO) proteins
T10534 231-234 Protein denotes Akt
T10533 103-111 Positive_regulation denotes increase
T10532 115-125 Protein denotes Akt kinase
T10557 1042-1049 Protein denotes Fig. 5A
T10556 1035-1040 Protein denotes Nec-1
T10555 1002-1005 Protein denotes Akt
T10554 656-664 Positive_regulation denotes increase
T10553 672-687 Phosphorylation denotes phosphorylation
T10552 617-632 Phosphorylation denotes phosphorylation
T10551 617-632 Phosphorylation denotes phosphorylation
T10550 698-701 Protein denotes S5A
T10549 689-696 Protein denotes Fig. 5B
T10548 668-671 Protein denotes Akt
T10547 515-531 Protein denotes GSK-3α/β, p70S6K
T10546 507-513 Protein denotes FoxO3a
T10545 468-476 Positive_regulation denotes increase
T10544 452-456 Protein denotes MDM2
T10543 445-450 Protein denotes FoxO4
T10542 438-443 Protein denotes FoxO1
T10541 399-405 Protein denotes p70S6K
T10540 388-397 Protein denotes S6 Kinase
T10539 366-387 Protein denotes p70 ribosomal protein
T10538 326-330 Protein denotes MDM2
R6816 T10532 T10533 themeOf Akt kinase,increase
R6817 T10542 T10545 themeOf FoxO1,increase
R6818 T10548 T10553 themeOf Akt,phosphorylation
R6819 T10549 T10551 themeOf Fig. 5B,phosphorylation
R6820 T10550 T10552 themeOf S5A,phosphorylation
R6821 T10553 T10554 themeOf phosphorylation,increase
R6822 T10555 T10560 themeOf Akt,increases
R6823 T10556 T10561 causeOf Nec-1,abrogated
R6824 T10556 T10562 causeOf Nec-1,abrogated
R6825 T10557 T10561 themeOf Fig. 5A,abrogated
R6826 T10560 T10562 themeOf increases,abrogated

test3

Id Subject Object Predicate Lexical cue
T9010 309-324 Protein denotes double minute 2
T9009 197-212 Phosphorylation denotes phosphorylation
T9008 181-189 Positive_regulation denotes increase
T9007 73-88 Phosphorylation denotes phosphorylation
T9006 54-62 Positive_regulation denotes increase
T8978 1217-1221 Protein denotes RIP1
T8977 722-728 Protein denotes pFoxO1
T8976 550-552 Protein denotes S6
T8975 525-531 Protein denotes p70S6K
T8974 522-523 Protein denotes β
T8973 515-521 Protein denotes GSK-3α
T8972 507-513 Protein denotes FoxO3a
T8971 452-456 Protein denotes MDM2
T8970 445-450 Protein denotes FoxO4
T8969 438-443 Protein denotes FoxO1
T8968 408-410 Protein denotes S6
T8967 399-405 Protein denotes p70S6K
T8966 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T8965 326-330 Protein denotes MDM2
T8964 309-324 Protein denotes double minute 2
T9027 1217-1221 Protein denotes RIP1
T9026 1022-1031 Negative_regulation denotes abrogated
T9025 722-728 Protein denotes pFoxO1
T9024 672-687 Phosphorylation denotes phosphorylation
T9023 656-664 Positive_regulation denotes increase
T9022 550-552 Protein denotes S6
T9021 525-531 Protein denotes p70S6K
T9020 522-523 Protein denotes β
T9019 515-521 Protein denotes GSK-3α
T9018 507-513 Protein denotes FoxO3a
T9017 452-456 Protein denotes MDM2
T9016 445-450 Protein denotes FoxO4
T9015 438-443 Protein denotes FoxO1
T9014 408-410 Protein denotes S6
T9013 399-405 Protein denotes p70S6K
T9012 366-397 Protein denotes p70 ribosomal protein S6 Kinase
T9011 326-330 Protein denotes MDM2
R5825 T9007 T9006 themeOf phosphorylation,increase
R5826 T9009 T9008 themeOf phosphorylation,increase
R5827 T9010 T9009 themeOf double minute 2,phosphorylation
R5828 T9011 T9010 equivalentTo MDM2,double minute 2
R5829 T9012 T9010 equivalentTo p70 ribosomal protein S6 Kinase,double minute 2
R5830 T9013 T9010 equivalentTo p70S6K,double minute 2
R5831 T9013 T9012 equivalentTo p70S6K,p70 ribosomal protein S6 Kinase
R5832 T9014 T9009 themeOf S6,phosphorylation
R5833 T9024 T9023 themeOf phosphorylation,increase