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PMC:3585731 / 17662-17827 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8102 81-96 Phosphorylation denotes phosphorylation
T8101 58-66 Positive_regulation denotes increase
T8094 36-40 Protein denotes RIP1
R5253 T8102 T8101 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8222 159-164 NN denotes death
T8221 154-158 NN denotes cell
T8220 142-153 JJ denotes necroptotic
T8219 139-141 IN denotes of
T8218 129-138 NN denotes execution
T8217 125-128 DT denotes the
T8216 122-124 TO denotes to
T8215 110-121 VB denotes contributes
T8214 97-109 RB denotes functionally
T8213 81-96 NN denotes phosphorylation
T8212 74-80 NN denotes Thr308
T8211 70-73 NN denotes Akt
T8210 67-69 IN denotes in
T8209 58-66 NN denotes increase
T8208 41-57 JJ denotes kinase-dependent
T8207 36-40 NN denotes RIP1
T8206 28-35 VB denotes delayed
T8205 24-27 DT denotes the
T8204 21-23 IN denotes if
T8203 8-20 VB denotes investigated
T8202 3-7 RB denotes next
T8201 0-2 PRP denotes We
R5272 T8201 T8203 arg2Of We,investigated
R5273 T8203 T8202 arg1Of investigated,next
R5274 T8203 T8204 arg1Of investigated,if
R5275 T8209 T8205 arg1Of increase,the
R5276 T8209 T8206 arg2Of increase,delayed
R5277 T8209 T8207 arg1Of increase,RIP1
R5278 T8209 T8208 arg1Of increase,kinase-dependent
R5279 T8209 T8210 arg1Of increase,in
R5280 T8209 T8215 arg1Of increase,contributes
R5281 T8213 T8210 arg2Of phosphorylation,in
R5282 T8213 T8211 arg1Of phosphorylation,Akt
R5283 T8213 T8212 arg1Of phosphorylation,Thr308
R5284 T8215 T8204 arg2Of contributes,if
R5285 T8215 T8214 arg1Of contributes,functionally
R5286 T8215 T8216 arg1Of contributes,to
R5287 T8218 T8216 arg2Of execution,to
R5288 T8218 T8217 arg1Of execution,the
R5289 T8218 T8219 arg1Of execution,of
R5290 T8222 T8219 arg2Of death,of
R5291 T8222 T8220 arg1Of death,necroptotic
R5292 T8222 T8221 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8149 36-40 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8459 36-40 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T8451 70-73 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T8442 70-73 http://www.uniprot.org/uniprot/P31751 denotes Akt
T8433 70-73 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T8163 159-164 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T8160 154-164 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T8155 81-96 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T8180 154-158 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T8135 0-165 Sentence denotes We next investigated if the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation functionally contributes to the execution of necroptotic cell death.
T110 0-165 Sentence denotes We next investigated if the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation functionally contributes to the execution of necroptotic cell death.

simple1

Id Subject Object Predicate Lexical cue
T8182 36-40 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8431 58-66 Positive_regulation denotes increase
T8426 36-40 Protein denotes RIP1
R5493 T8426 T8431 themeOf RIP1,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8734 58-66 Positive_regulation denotes increase
T8733 41-57 Regulation denotes kinase-dependent
T8732 110-121 Positive_regulation denotes contributes
T8727 36-40 Protein denotes RIP1
R5748 T8727 T8734 themeOf RIP1,increase
R5749 T8734 T8732 themeOf increase,contributes
R5750 T8734 T8733 themeOf increase,kinase-dependent

DLUT931

Id Subject Object Predicate Lexical cue
T8712 41-57 Positive_regulation denotes kinase-dependent
T8711 28-35 Positive_regulation denotes delayed
T8710 110-121 Positive_regulation denotes contributes
T8709 58-66 Positive_regulation denotes increase
T8704 36-40 Protein denotes RIP1
R5728 T8704 T8709 themeOf RIP1,increase
R5731 T8709 T8710 themeOf increase,contributes
R5732 T8709 T8711 themeOf increase,delayed
R5733 T8709 T8712 themeOf increase,kinase-dependent
R5734 T8711 T8709 themeOf delayed,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8818 36-40 Protein denotes RIP1
T8802 70-73 Protein denotes Akt
T8797 70-80 Entity denotes Akt Thr308
T8794 36-57 Protein denotes RIP1 kinase-dependent
T8831 67-96 Phosphorylation denotes in Akt Thr308 phosphorylation
T8830 24-96 Regulation denotes the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation
T8825 24-96 Positive_regulation denotes the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation
T8822 24-96 Negative_regulation denotes the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation
R5782 T8794 T8830 causeOf RIP1 kinase-dependent,the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation
R5784 T8797 T8802 partOf Akt Thr308,Akt
R5785 T8797 T8831 siteOf Akt Thr308,in Akt Thr308 phosphorylation
R5788 T8802 T8831 themeOf Akt,in Akt Thr308 phosphorylation
R5795 T8825 T8822 themeOf the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation,the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation
R5796 T8825 T8830 themeOf the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation,the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation
R5798 T8831 T8825 themeOf in Akt Thr308 phosphorylation,the delayed RIP1 kinase-dependent increase in Akt Thr308 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8487 67-69 IN denotes in
T8500 164-165 . denotes .
T8499 159-164 NN denotes death
T8498 154-158 NN denotes cell
T8497 142-153 JJ denotes necroptotic
T8496 139-141 IN denotes of
T8495 129-138 NN denotes execution
T8494 125-128 DT denotes the
T8493 122-124 TO denotes to
T8492 110-121 VBZ denotes contributes
T8491 97-109 RB denotes functionally
T8490 81-96 NN denotes phosphorylation
T8489 74-80 NNP denotes Thr308
T8488 70-73 NNP denotes Akt
T8486 58-66 NN denotes increase
T8485 41-57 JJ denotes kinase-dependent
T8484 36-40 NNP denotes RIP1
T8483 28-35 VBN denotes delayed
T8482 24-27 DT denotes the
T8481 21-23 IN denotes if
T8480 8-20 VBN denotes investigated
T8479 3-7 JJ denotes next
T8478 0-2 PRP denotes We
R5508 T8478 T8480 nsubj We,investigated
R5509 T8479 T8480 advmod next,investigated
R5510 T8480 T8480 ROOT investigated,investigated
R5511 T8481 T8492 mark if,contributes
R5512 T8482 T8486 det the,increase
R5513 T8483 T8486 amod delayed,increase
R5514 T8484 T8486 nmod RIP1,increase
R5515 T8485 T8486 amod kinase-dependent,increase
R5516 T8486 T8492 nsubj increase,contributes
R5517 T8487 T8486 prep in,increase
R5518 T8488 T8490 compound Akt,phosphorylation
R5519 T8489 T8490 compound Thr308,phosphorylation
R5520 T8490 T8486 appos phosphorylation,increase
R5521 T8491 T8492 advmod functionally,contributes
R5522 T8492 T8480 advcl contributes,investigated
R5523 T8493 T8492 prep to,contributes
R5524 T8494 T8495 det the,execution
R5525 T8495 T8493 pobj execution,to
R5526 T8496 T8495 prep of,execution
R5527 T8497 T8499 amod necroptotic,death
R5528 T8498 T8499 compound cell,death
R5529 T8499 T8496 pobj death,of
R5530 T8500 T8480 punct .,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8741 58-66 Positive_regulation denotes increase
T8740 58-66 Positive_regulation denotes increase
T8739 81-96 Phosphorylation denotes phosphorylation
T8738 81-96 Phosphorylation denotes phosphorylation
T8737 74-80 Protein denotes Thr308
T8736 70-73 Protein denotes Akt
T8735 36-47 Protein denotes RIP1 kinase
R5751 T8736 T8738 themeOf Akt,phosphorylation
R5752 T8737 T8739 themeOf Thr308,phosphorylation
R5753 T8738 T8740 themeOf phosphorylation,increase
R5754 T8739 T8741 themeOf phosphorylation,increase

test3

Id Subject Object Predicate Lexical cue
T8121 81-96 Phosphorylation denotes phosphorylation
T8120 58-66 Positive_regulation denotes increase
T8119 36-40 Protein denotes RIP1
T8112 36-40 Protein denotes RIP1
R5256 T8121 T8120 themeOf phosphorylation,increase