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PMC:3585731 / 17133-17349 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T7376 146-153 Negative_regulation denotes reduced
T7375 58-73 Phosphorylation denotes phosphorylation
T7374 42-50 Positive_regulation denotes increase
T7362 85-90 Protein denotes c-Jun
T7361 0-4 Protein denotes TNFα
R4782 T7362 T7375 themeOf c-Jun,phosphorylation
R4787 T7375 T7374 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7635 214-215 -RRB- denotes )
T7634 213-214 NN denotes C
T7633 211-212 -COMMA- denotes ,
T7632 208-211 NN denotes S4B
T7631 203-207 NNP denotes Fig.
T7630 202-203 -LRB- denotes (
T7629 196-201 NN denotes point
T7628 191-195 NN denotes time
T7627 188-190 NN denotes hr
T7626 186-187 CD denotes 9
T7625 184-185 -COMMA- denotes ,
T7624 180-184 JJ denotes late
T7623 176-179 DT denotes the
T7622 173-175 IN denotes at
T7621 164-172 NN denotes pJNK/Jun
T7620 161-163 IN denotes of
T7619 154-160 NN denotes levels
T7618 146-153 VB denotes reduced
T7617 143-145 PRP denotes it
T7616 141-142 -COMMA- denotes ,
T7615 134-141 RB denotes however
T7614 132-133 -COMMA- denotes ,
T7613 124-132 NN denotes increase
T7612 118-123 JJ denotes early
T7611 113-117 DT denotes this
T7610 106-112 VB denotes affect
T7609 102-105 RB denotes not
T7608 98-101 VB denotes did
T7607 92-97 NN denotes Nec-1
T7606 85-91 NN denotes c-Jun.
T7605 81-84 CC denotes and
T7604 77-80 NN denotes JNK
T7603 74-76 IN denotes of
T7602 58-73 NN denotes phosphorylation
T7601 54-57 DT denotes the
T7600 51-53 IN denotes in
T7599 42-50 NN denotes increase
T7598 35-41 JJ denotes robust
T7597 31-34 CC denotes and
T7596 25-30 JJ denotes early
T7595 22-24 DT denotes an
T7594 15-21 VB denotes caused
T7593 5-14 NN denotes treatment
T7592 0-4 NN denotes TNFα
R4909 T7593 T7592 arg1Of treatment,TNFα
R4910 T7593 T7594 arg1Of treatment,caused
R4911 T7594 T7605 arg1Of caused,and
R4912 T7596 T7597 arg1Of early,and
R4913 T7598 T7597 arg2Of robust,and
R4914 T7599 T7594 arg2Of increase,caused
R4915 T7599 T7595 arg1Of increase,an
R4916 T7599 T7596 arg1Of increase,early
R4917 T7599 T7598 arg1Of increase,robust
R4918 T7599 T7600 arg1Of increase,in
R4919 T7602 T7600 arg2Of phosphorylation,in
R4920 T7602 T7601 arg1Of phosphorylation,the
R4921 T7602 T7603 arg1Of phosphorylation,of
R4922 T7604 T7603 arg2Of JNK,of
R4923 T7607 T7606 arg1Of Nec-1,c-Jun.
R4924 T7607 T7608 arg1Of Nec-1,did
R4925 T7607 T7610 arg1Of Nec-1,affect
R4926 T7610 T7608 arg2Of affect,did
R4927 T7610 T7609 arg1Of affect,not
R4928 T7610 T7614 arg1Of affect,","
R4929 T7610 T7615 arg1Of affect,however
R4930 T7610 T7616 arg1Of affect,","
R4931 T7613 T7610 arg2Of increase,affect
R4932 T7613 T7611 arg1Of increase,this
R4933 T7613 T7612 arg1Of increase,early
R4934 T7616 T7605 arg2Of ",",and
R4935 T7617 T7618 arg1Of it,reduced
R4936 T7618 T7616 arg2Of reduced,","
R4937 T7619 T7618 arg2Of levels,reduced
R4938 T7619 T7620 arg1Of levels,of
R4939 T7621 T7620 arg2Of pJNK/Jun,of
R4940 T7621 T7622 arg1Of pJNK/Jun,at
R4941 T7624 T7625 arg1Of late,","
R4942 T7626 T7625 arg2Of 9,","
R4943 T7629 T7622 arg2Of point,at
R4944 T7629 T7623 arg1Of point,the
R4945 T7629 T7624 arg1Of point,late
R4946 T7629 T7626 arg1Of point,9
R4947 T7629 T7627 arg1Of point,hr
R4948 T7629 T7628 arg1Of point,time
R4949 T7629 T7630 arg1Of point,(
R4950 T7632 T7630 arg2Of S4B,(
R4951 T7632 T7631 arg1Of S4B,Fig.
R4952 T7632 T7633 arg1Of S4B,","
R4953 T7634 T7633 arg2Of C,","
R4954 T7635 T7630 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T7430 42-50 Antecedent denotes increase
T7429 113-132 Anaphor denotes this early increase
R4799 T7429 T7430 boundBy this early increase,increase

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7438 85-90 Protein denotes c-Jun
T7437 0-4 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7703 85-90 http://www.uniprot.org/uniprot/P05412 denotes c-Jun
T7690 0-4 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T7455 77-80 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7444 58-73 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T7463 77-80 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T7413 0-216 Sentence denotes TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun. Nec-1 did not affect this early increase, however, it reduced levels of pJNK/Jun at the late, 9 hr time point (Fig. S4B, C).
T106 0-91 Sentence denotes TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun.
T107 92-216 Sentence denotes Nec-1 did not affect this early increase, however, it reduced levels of pJNK/Jun at the late, 9 hr time point (Fig. S4B, C).

simple1

Id Subject Object Predicate Lexical cue
T7472 85-90 Protein denotes c-Jun
T7471 0-4 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7677 85-90 Protein denotes c-Jun
T7676 0-4 Protein denotes TNFα
T7683 42-50 Positive_regulation denotes increase
T7682 58-73 Phosphorylation denotes phosphorylation
R4989 T7677 T7682 themeOf c-Jun,phosphorylation
R4990 T7682 T7683 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7942 42-50 Positive_regulation denotes increase
T7941 58-73 Phosphorylation denotes phosphorylation
T7936 85-90 Protein denotes c-Jun
T7935 0-4 Protein denotes TNFα
R5194 T7936 T7941 themeOf c-Jun,phosphorylation
R5195 T7941 T7942 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T7722 42-50 Positive_regulation denotes increase
T7721 58-73 Phosphorylation denotes phosphorylation
T7713 85-90 Protein denotes c-Jun
T7712 0-4 Protein denotes TNFα
R4994 T7713 T7721 themeOf c-Jun,phosphorylation
R4997 T7721 T7722 themeOf phosphorylation,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8077 0-21 Regulation denotes TNFα treatment caused
T8066 51-80 Phosphorylation denotes in the phosphorylation of JNK
T8063 35-80 Positive_regulation denotes robust increase in the phosphorylation of JNK
T8057 0-4 Protein denotes TNFα
T8048 164-172 Entity denotes pJNK/Jun
T8040 165-172 Protein denotes JNK/Jun
T8039 165-172 Protein denotes JNK/Jun
T8038 74-80 Protein denotes of JNK
T8034 92-97 Protein denotes Nec-1
T8030 169-172 Protein denotes Jun
R5236 T8038 T8066 themeOf of JNK,in the phosphorylation of JNK
R5244 T8057 T8077 themeOf TNFα,TNFα treatment caused
R5249 T8066 T8063 themeOf in the phosphorylation of JNK,robust increase in the phosphorylation of JNK

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7869 124-132 NN denotes increase
T7868 118-123 JJ denotes early
T7867 113-117 DT denotes this
T7866 106-112 VB denotes affect
T7865 102-105 RB denotes not
T7864 98-101 VBD denotes did
T7863 92-97 NN denotes Nec-1
T7862 90-91 . denotes .
T7861 85-90 NNP denotes c-Jun
T7860 81-84 CC denotes and
T7859 77-80 NNP denotes JNK
T7858 74-76 IN denotes of
T7857 58-73 NN denotes phosphorylation
T7856 54-57 DT denotes the
T7855 51-53 IN denotes in
T7854 42-50 NN denotes increase
T7853 35-41 JJ denotes robust
T7852 31-34 CC denotes and
T7851 25-30 JJ denotes early
T7850 22-24 DT denotes an
T7893 215-216 . denotes .
T7892 214-215 -RRB- denotes )
T7891 213-214 NNP denotes C
T7890 211-212 , denotes ,
T7889 208-211 CD denotes S4B
T7888 206-207 . denotes .
T7887 203-206 NNP denotes Fig
T7886 202-203 -LRB- denotes (
T7885 196-201 NN denotes point
T7884 191-195 NN denotes time
T7883 188-190 NN denotes hr
T7882 186-187 CD denotes 9
T7881 184-185 , denotes ,
T7880 180-184 JJ denotes late
T7879 176-179 DT denotes the
T7878 173-175 IN denotes at
T7877 164-172 NNP denotes pJNK/Jun
T7876 161-163 IN denotes of
T7875 154-160 NNS denotes levels
T7874 146-153 VBD denotes reduced
T7873 143-145 PRP denotes it
T7872 141-142 , denotes ,
T7871 134-141 RB denotes however
T7870 132-133 , denotes ,
T7849 15-21 VBD denotes caused
T7848 5-14 NN denotes treatment
T7847 0-4 NNP denotes TNFα
R5111 T7847 T7848 compound TNFα,treatment
R5112 T7848 T7849 nsubj treatment,caused
R5113 T7849 T7849 ROOT caused,caused
R5114 T7850 T7854 det an,increase
R5115 T7851 T7854 amod early,increase
R5116 T7852 T7851 cc and,early
R5117 T7853 T7851 conj robust,early
R5118 T7854 T7849 dobj increase,caused
R5119 T7855 T7854 prep in,increase
R5120 T7856 T7857 det the,phosphorylation
R5121 T7857 T7855 pobj phosphorylation,in
R5122 T7858 T7857 prep of,phosphorylation
R5123 T7859 T7858 pobj JNK,of
R5124 T7860 T7859 cc and,JNK
R5125 T7861 T7859 conj c-Jun,JNK
R5126 T7862 T7849 punct .,caused
R5127 T7863 T7866 nsubj Nec-1,affect
R5128 T7864 T7866 aux did,affect
R5129 T7865 T7866 neg not,affect
R5130 T7866 T7874 ccomp affect,reduced
R5131 T7867 T7869 det this,increase
R5132 T7868 T7869 amod early,increase
R5133 T7869 T7866 dobj increase,affect
R5134 T7870 T7874 punct ",",reduced
R5135 T7871 T7874 advmod however,reduced
R5136 T7872 T7874 punct ",",reduced
R5137 T7873 T7874 nsubj it,reduced
R5138 T7874 T7874 ROOT reduced,reduced
R5139 T7875 T7874 dobj levels,reduced
R5140 T7876 T7875 prep of,levels
R5141 T7877 T7876 pobj pJNK/Jun,of
R5142 T7878 T7874 prep at,reduced
R5143 T7879 T7885 det the,point
R5144 T7880 T7885 amod late,point
R5145 T7881 T7885 punct ",",point
R5146 T7882 T7885 nummod 9,point
R5147 T7883 T7884 amod hr,time
R5148 T7884 T7885 compound time,point
R5149 T7885 T7878 pobj point,at
R5150 T7886 T7887 punct (,Fig
R5151 T7887 T7885 appos Fig,point
R5152 T7888 T7874 punct .,reduced
R5153 T7889 T7889 ROOT S4B,S4B
R5154 T7890 T7891 punct ",",C
R5155 T7891 T7889 appos C,S4B
R5156 T7892 T7889 punct ),S4B
R5157 T7893 T7889 punct .,S4B

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7980 146-153 Negative_regulation denotes reduced
T7979 146-153 Negative_regulation denotes reduced
T7978 154-160 Positive_regulation denotes levels
T7977 154-160 Positive_regulation denotes levels
T7976 169-172 Protein denotes Jun
T7975 164-168 Protein denotes pJNK
T7974 92-97 Protein denotes Nec-1
T7973 42-50 Positive_regulation denotes increase
T7972 42-50 Positive_regulation denotes increase
T7971 58-73 Phosphorylation denotes phosphorylation
T7970 58-73 Phosphorylation denotes phosphorylation
T7969 85-90 Protein denotes c-Jun
T7968 77-80 Protein denotes JNK
T7967 0-4 Protein denotes TNFα
R5204 T7968 T7970 themeOf JNK,phosphorylation
R5205 T7969 T7971 themeOf c-Jun,phosphorylation
R5206 T7970 T7972 themeOf phosphorylation,increase
R5207 T7971 T7973 themeOf phosphorylation,increase
R5208 T7975 T7977 themeOf pJNK,levels
R5209 T7976 T7978 themeOf Jun,levels
R5210 T7977 T7979 themeOf levels,reduced
R5211 T7978 T7980 themeOf levels,reduced

test3

Id Subject Object Predicate Lexical cue
T7404 146-153 Negative_regulation denotes reduced
T7403 85-90 Protein denotes c-Jun
T7402 58-73 Phosphorylation denotes phosphorylation
T7401 42-50 Positive_regulation denotes increase
T7400 0-4 Protein denotes TNFα
T7384 85-90 Protein denotes c-Jun
T7383 0-4 Protein denotes TNFα
R4792 T7400 T7401 causeOf TNFα,increase
R4793 T7402 T7401 themeOf phosphorylation,increase
R4794 T7403 T7402 themeOf c-Jun,phosphorylation