PMC:3585731 / 17133-17224
Annnotations
testone
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pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T7606","span":{"begin":85,"end":91},"obj":"NN"},{"id":"T7605","span":{"begin":81,"end":84},"obj":"CC"},{"id":"T7604","span":{"begin":77,"end":80},"obj":"NN"},{"id":"T7603","span":{"begin":74,"end":76},"obj":"IN"},{"id":"T7602","span":{"begin":58,"end":73},"obj":"NN"},{"id":"T7601","span":{"begin":54,"end":57},"obj":"DT"},{"id":"T7600","span":{"begin":51,"end":53},"obj":"IN"},{"id":"T7599","span":{"begin":42,"end":50},"obj":"NN"},{"id":"T7598","span":{"begin":35,"end":41},"obj":"JJ"},{"id":"T7597","span":{"begin":31,"end":34},"obj":"CC"},{"id":"T7596","span":{"begin":25,"end":30},"obj":"JJ"},{"id":"T7595","span":{"begin":22,"end":24},"obj":"DT"},{"id":"T7594","span":{"begin":15,"end":21},"obj":"VB"},{"id":"T7593","span":{"begin":5,"end":14},"obj":"NN"},{"id":"T7592","span":{"begin":0,"end":4},"obj":"NN"}],"relations":[{"id":"R4909","pred":"arg1Of","subj":"T7593","obj":"T7592"},{"id":"R4910","pred":"arg1Of","subj":"T7593","obj":"T7594"},{"id":"R4911","pred":"arg1Of","subj":"T7594","obj":"T7605"},{"id":"R4912","pred":"arg1Of","subj":"T7596","obj":"T7597"},{"id":"R4913","pred":"arg2Of","subj":"T7598","obj":"T7597"},{"id":"R4914","pred":"arg2Of","subj":"T7599","obj":"T7594"},{"id":"R4915","pred":"arg1Of","subj":"T7599","obj":"T7595"},{"id":"R4916","pred":"arg1Of","subj":"T7599","obj":"T7596"},{"id":"R4917","pred":"arg1Of","subj":"T7599","obj":"T7598"},{"id":"R4918","pred":"arg1Of","subj":"T7599","obj":"T7600"},{"id":"R4919","pred":"arg2Of","subj":"T7602","obj":"T7600"},{"id":"R4920","pred":"arg1Of","subj":"T7602","obj":"T7601"},{"id":"R4921","pred":"arg1Of","subj":"T7602","obj":"T7603"},{"id":"R4922","pred":"arg2Of","subj":"T7604","obj":"T7603"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
bionlp-st-ge-2016-coref
{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T7430","span":{"begin":42,"end":50},"obj":"Antecedent"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
bionlp-st-ge-2016-test-proteins
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bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T7703","span":{"begin":85,"end":90},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T7690","span":{"begin":0,"end":4},"obj":"http://www.uniprot.org/uniprot/P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T7455","span":{"begin":77,"end":80},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T7444","span":{"begin":58,"end":73},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
GO-MF
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sentences
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simple1
{"project":"simple1","denotations":[{"id":"T7472","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7471","span":{"begin":0,"end":4},"obj":"Protein"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T7677","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7676","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T7683","span":{"begin":42,"end":50},"obj":"Positive_regulation"},{"id":"T7682","span":{"begin":58,"end":73},"obj":"Phosphorylation"}],"relations":[{"id":"R4989","pred":"themeOf","subj":"T7677","obj":"T7682"},{"id":"R4990","pred":"themeOf","subj":"T7682","obj":"T7683"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T7942","span":{"begin":42,"end":50},"obj":"Positive_regulation"},{"id":"T7941","span":{"begin":58,"end":73},"obj":"Phosphorylation"},{"id":"T7936","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7935","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R5194","pred":"themeOf","subj":"T7936","obj":"T7941"},{"id":"R5195","pred":"themeOf","subj":"T7941","obj":"T7942"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T7722","span":{"begin":42,"end":50},"obj":"Positive_regulation"},{"id":"T7721","span":{"begin":58,"end":73},"obj":"Phosphorylation"},{"id":"T7713","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7712","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R4994","pred":"themeOf","subj":"T7713","obj":"T7721"},{"id":"R4997","pred":"themeOf","subj":"T7721","obj":"T7722"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T8077","span":{"begin":0,"end":21},"obj":"Regulation"},{"id":"T8066","span":{"begin":51,"end":80},"obj":"Phosphorylation"},{"id":"T8063","span":{"begin":35,"end":80},"obj":"Positive_regulation"},{"id":"T8057","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T8038","span":{"begin":74,"end":80},"obj":"Protein"}],"relations":[{"id":"R5236","pred":"themeOf","subj":"T8038","obj":"T8066"},{"id":"R5244","pred":"themeOf","subj":"T8057","obj":"T8077"},{"id":"R5249","pred":"themeOf","subj":"T8066","obj":"T8063"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T7862","span":{"begin":90,"end":91},"obj":"."},{"id":"T7861","span":{"begin":85,"end":90},"obj":"NNP"},{"id":"T7860","span":{"begin":81,"end":84},"obj":"CC"},{"id":"T7859","span":{"begin":77,"end":80},"obj":"NNP"},{"id":"T7858","span":{"begin":74,"end":76},"obj":"IN"},{"id":"T7857","span":{"begin":58,"end":73},"obj":"NN"},{"id":"T7856","span":{"begin":54,"end":57},"obj":"DT"},{"id":"T7855","span":{"begin":51,"end":53},"obj":"IN"},{"id":"T7854","span":{"begin":42,"end":50},"obj":"NN"},{"id":"T7853","span":{"begin":35,"end":41},"obj":"JJ"},{"id":"T7852","span":{"begin":31,"end":34},"obj":"CC"},{"id":"T7851","span":{"begin":25,"end":30},"obj":"JJ"},{"id":"T7850","span":{"begin":22,"end":24},"obj":"DT"},{"id":"T7849","span":{"begin":15,"end":21},"obj":"VBD"},{"id":"T7848","span":{"begin":5,"end":14},"obj":"NN"},{"id":"T7847","span":{"begin":0,"end":4},"obj":"NNP"}],"relations":[{"id":"R5111","pred":"compound","subj":"T7847","obj":"T7848"},{"id":"R5112","pred":"nsubj","subj":"T7848","obj":"T7849"},{"id":"R5113","pred":"ROOT","subj":"T7849","obj":"T7849"},{"id":"R5114","pred":"det","subj":"T7850","obj":"T7854"},{"id":"R5115","pred":"amod","subj":"T7851","obj":"T7854"},{"id":"R5116","pred":"cc","subj":"T7852","obj":"T7851"},{"id":"R5117","pred":"conj","subj":"T7853","obj":"T7851"},{"id":"R5118","pred":"dobj","subj":"T7854","obj":"T7849"},{"id":"R5119","pred":"prep","subj":"T7855","obj":"T7854"},{"id":"R5120","pred":"det","subj":"T7856","obj":"T7857"},{"id":"R5121","pred":"pobj","subj":"T7857","obj":"T7855"},{"id":"R5122","pred":"prep","subj":"T7858","obj":"T7857"},{"id":"R5123","pred":"pobj","subj":"T7859","obj":"T7858"},{"id":"R5124","pred":"cc","subj":"T7860","obj":"T7859"},{"id":"R5125","pred":"conj","subj":"T7861","obj":"T7859"},{"id":"R5126","pred":"punct","subj":"T7862","obj":"T7849"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T7973","span":{"begin":42,"end":50},"obj":"Positive_regulation"},{"id":"T7972","span":{"begin":42,"end":50},"obj":"Positive_regulation"},{"id":"T7971","span":{"begin":58,"end":73},"obj":"Phosphorylation"},{"id":"T7970","span":{"begin":58,"end":73},"obj":"Phosphorylation"},{"id":"T7969","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7968","span":{"begin":77,"end":80},"obj":"Protein"},{"id":"T7967","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R5204","pred":"themeOf","subj":"T7968","obj":"T7970"},{"id":"R5205","pred":"themeOf","subj":"T7969","obj":"T7971"},{"id":"R5206","pred":"themeOf","subj":"T7970","obj":"T7972"},{"id":"R5207","pred":"themeOf","subj":"T7971","obj":"T7973"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}
test3
{"project":"test3","denotations":[{"id":"T7403","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7402","span":{"begin":58,"end":73},"obj":"Phosphorylation"},{"id":"T7401","span":{"begin":42,"end":50},"obj":"Positive_regulation"},{"id":"T7400","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T7384","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T7383","span":{"begin":0,"end":4},"obj":"Protein"}],"relations":[{"id":"R4792","pred":"causeOf","subj":"T7400","obj":"T7401"},{"id":"R4793","pred":"themeOf","subj":"T7402","obj":"T7401"},{"id":"R4794","pred":"themeOf","subj":"T7403","obj":"T7402"}],"text":"TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun."}