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PMC:3585731 / 171-636 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T23 422-432 Gene_expression denotes production
T22 409-413 Regulation denotes role
T15 417-421 Protein denotes TNFα
T14 304-308 Protein denotes RIP1
T13 272-302 Protein denotes receptor interacting protein-1
R5 T23 T22 themeOf production,role
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T240 458-460 VB denotes is
T239 454-457 NN denotes Akt
T238 452-453 -COMMA- denotes ,
T237 441-452 NN denotes necroptosis
T236 434-440 IN denotes During
T235 422-432 NN denotes production
T234 417-421 NN denotes TNFα
T233 414-416 IN denotes in
T232 409-413 NN denotes role
T231 405-408 JJ denotes key
T230 403-404 DT denotes a
T229 397-402 VB denotes plays
T228 393-396 CC denotes and
T227 387-392 NN denotes cells
T226 382-386 NN denotes L929
T225 379-381 IN denotes in
T224 367-378 NN denotes necroptosis
T223 363-366 IN denotes for
T222 354-362 JJ denotes critical
T221 351-353 VB denotes is
T220 342-350 NN denotes activity
T219 335-341 NN denotes kinase
T218 331-334 NN denotes Akt
T217 326-330 IN denotes that
T216 321-325 VB denotes show
T215 318-320 PRP denotes We
T214 310-316 NN denotes kinase
T213 308-309 -RRB- denotes )
T212 304-308 NN denotes RIP1
T211 303-304 -LRB- denotes (
T210 293-302 NN denotes protein-1
T209 281-292 NN denotes interacting
T208 272-280 NN denotes receptor
T207 263-271 NN denotes mediator
T206 251-262 NN denotes necroptosis
T205 247-250 DT denotes the
T204 244-246 IN denotes by
T203 233-243 VB denotes controlled
T202 222-232 NN denotes mechanisms
T201 212-221 NN denotes signaling
T200 208-211 DT denotes the
T199 195-207 VB denotes investigated
T198 192-194 PRP denotes we
T197 190-191 -COMMA- denotes ,
T196 186-190 NN denotes work
T195 181-185 DT denotes this
T194 178-180 IN denotes In
T193 175-176 -RRB- denotes )
T192 171-175 NN denotes SIRS
T191 170-171 -LRB- denotes (
T190 161-169 NN denotes syndrome
T189 152-160 NN denotes response
T188 139-151 JJ denotes inflammatory
T187 130-138 JJ denotes systemic
T186 126-129 CC denotes and
T185 113-125 NN denotes inflammation
T184 102-112 JJ denotes intestinal
T183 92-101 VB denotes including
T182 83-91 NN denotes diseases
T181 75-82 JJ denotes various
T180 72-74 IN denotes of
T179 59-71 NN denotes pathogenesis
T178 55-58 DT denotes the
T177 52-54 IN denotes in
T176 41-51 VB denotes implicated
T175 36-40 VB denotes been
T174 32-35 VB denotes has
T173 27-31 WDT denotes that
T172 21-26 NN denotes death
T171 16-20 NN denotes cell
T170 7-15 JJ denotes necrotic
T169 4-6 IN denotes of
R34 T172 T169 arg2Of death,of
R35 T172 T170 arg1Of death,necrotic
R36 T172 T171 arg1Of death,cell
R37 T176 T174 arg2Of implicated,has
R38 T176 T175 arg2Of implicated,been
R39 T176 T177 arg1Of implicated,in
R40 T179 T177 arg2Of pathogenesis,in
R41 T179 T178 arg1Of pathogenesis,the
R42 T179 T180 arg1Of pathogenesis,of
R43 T182 T180 arg2Of diseases,of
R44 T182 T181 arg1Of diseases,various
R45 T182 T183 arg1Of diseases,including
R46 T185 T184 arg1Of inflammation,intestinal
R47 T185 T186 arg1Of inflammation,and
R48 T186 T183 arg2Of and,including
R49 T190 T186 arg2Of syndrome,and
R50 T190 T187 arg1Of syndrome,systemic
R51 T190 T188 arg1Of syndrome,inflammatory
R52 T190 T189 arg1Of syndrome,response
R53 T190 T191 arg1Of syndrome,(
R54 T192 T191 arg2Of SIRS,(
R55 T193 T191 arg3Of ),(
R56 T196 T194 arg2Of work,In
R57 T196 T195 arg1Of work,this
R58 T198 T199 arg1Of we,investigated
R59 T199 T194 arg1Of investigated,In
R60 T199 T197 arg1Of investigated,","
R61 T202 T199 arg2Of mechanisms,investigated
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 272-302 Protein denotes receptor interacting protein-1
T91 304-308 Protein denotes RIP1
T92 417-421 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 304-308 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 417-421 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 454-457 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T395 331-334 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 454-457 http://www.uniprot.org/uniprot/P31751 denotes Akt
T388 331-334 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 331-334 http://www.uniprot.org/uniprot/P31749 denotes Akt
T382 454-457 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T58 102-112 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal

GO-BP

Id Subject Object Predicate Lexical cue
T129 335-350 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T127 212-221 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T126 139-160 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T125 113-125 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T124 59-71 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T121 21-26 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T118 16-26 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T117 7-26 http://purl.obolibrary.org/obo/GO_0097300 denotes necrotic cell death
T116 7-26 http://purl.obolibrary.org/obo/GO_0070265 denotes necrotic cell death
T115 7-26 http://purl.obolibrary.org/obo/GO_0010939 denotes necrotic cell death
T111 441-452 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 367-378 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T109 251-262 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 441-452 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 367-378 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T101 251-262 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 335-350 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-CC

Id Subject Object Predicate Lexical cue
T137 16-20 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T62 178-317 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T63 318-433 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T5 178-317 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T6 318-433 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.

simple1

Id Subject Object Predicate Lexical cue
T145 272-302 Protein denotes receptor interacting protein-1
T146 304-308 Protein denotes RIP1
T147 417-421 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 272-302 Protein denotes receptor interacting protein-1
T356 304-308 Protein denotes RIP1
T357 417-421 Protein denotes TNFα
T366 409-413 Regulation denotes role
T367 422-432 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 272-302 Protein denotes receptor interacting protein-1
T444 304-308 Protein denotes RIP1
T445 417-421 Protein denotes TNFα
T454 422-432 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 409-413 Regulation denotes role
T412 272-302 Protein denotes receptor interacting protein-1
T413 304-308 Protein denotes RIP1
T414 417-421 Protein denotes TNFα
T423 422-432 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 417-432 Gene_expression denotes TNFα production
T748 244-316 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 304-308 Protein denotes RIP1
T743 331-334 Protein denotes Akt
T742 331-341 Protein denotes Akt kinase
T736 272-309 Protein denotes receptor interacting protein-1 (RIP1)
T734 417-421 Protein denotes TNFα
T729 454-457 Protein denotes Akt
R431 T734 T764 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T533 192-194 PRP denotes we
T532 190-191 , denotes ,
T531 186-190 NN denotes work
T530 181-185 DT denotes this
T529 178-180 IN denotes In
T528 176-177 . denotes .
T527 175-176 -RRB- denotes )
T526 171-175 NNP denotes SIRS
T525 170-171 -LRB- denotes (
T524 161-169 NN denotes syndrome
T523 152-160 NN denotes response
T522 139-151 JJ denotes inflammatory
T521 130-138 JJ denotes systemic
T520 126-129 CC denotes and
T519 113-125 NN denotes inflammation
T518 102-112 JJ denotes intestinal
T517 92-101 VBG denotes including
T516 83-91 NNS denotes diseases
T515 75-82 JJ denotes various
T514 72-74 IN denotes of
T513 59-71 NN denotes pathogenesis
T512 55-58 DT denotes the
T511 52-54 IN denotes in
T510 41-51 VBN denotes implicated
T509 36-40 VBN denotes been
T508 32-35 VBZ denotes has
T507 27-31 WDT denotes that
T506 21-26 NN denotes death
T505 16-20 NN denotes cell
T504 7-15 JJ denotes necrotic
T503 4-6 IN denotes of
T573 434-440 IN denotes During
T572 432-433 . denotes .
T571 422-432 NN denotes production
T570 417-421 JJ denotes TNFα
T569 414-416 IN denotes in
T568 409-413 NN denotes role
T567 405-408 JJ denotes key
T566 403-404 DT denotes a
T565 397-402 VBZ denotes plays
T564 393-396 CC denotes and
T563 387-392 NNS denotes cells
T562 382-386 CD denotes L929
T561 379-381 IN denotes in
T560 367-378 NN denotes necroptosis
T559 363-366 IN denotes for
T558 354-362 JJ denotes critical
T557 351-353 VBZ denotes is
T556 342-350 NN denotes activity
T555 335-341 NN denotes kinase
T554 331-334 NNP denotes Akt
T553 326-330 IN denotes that
T552 321-325 VBP denotes show
T551 318-320 PRP denotes We
T550 316-317 . denotes .
T549 310-316 NN denotes kinase
T548 308-309 -RRB- denotes )
T547 304-308 CD denotes RIP1
T546 303-304 -LRB- denotes (
T545 293-302 NN denotes protein-1
T544 281-292 VBG denotes interacting
T543 272-280 NN denotes receptor
T542 263-271 NN denotes mediator
T541 251-262 NN denotes necroptosis
T540 247-250 DT denotes the
T539 244-246 IN denotes by
T538 233-243 VBN denotes controlled
T537 222-232 NNS denotes mechanisms
T536 212-221 VBG denotes signaling
T535 208-211 DT denotes the
T534 195-207 VBD denotes investigated
T577 458-460 VBZ denotes is
T576 454-457 NNP denotes Akt
T575 452-453 , denotes ,
T574 441-452 NN denotes necroptosis
R244 T504 T506 amod necrotic,death
R245 T505 T506 compound cell,death
R246 T506 T503 pobj death,of
R247 T507 T510 nsubjpass that,implicated
R248 T508 T510 aux has,implicated
R249 T509 T510 auxpass been,implicated
R250 T510 T506 relcl implicated,death
R251 T511 T510 prep in,implicated
R252 T512 T513 det the,pathogenesis
R253 T513 T511 pobj pathogenesis,in
R254 T514 T513 prep of,pathogenesis
R255 T515 T516 amod various,diseases
R256 T516 T514 pobj diseases,of
R257 T517 T516 prep including,diseases
R258 T518 T519 amod intestinal,inflammation
R259 T519 T517 pobj inflammation,including
R260 T520 T519 cc and,inflammation
R261 T521 T524 amod systemic,syndrome
R262 T522 T523 amod inflammatory,response
R263 T523 T524 compound response,syndrome
R264 T524 T519 conj syndrome,inflammation
R265 T525 T524 punct (,syndrome
R266 T526 T524 appos SIRS,syndrome
R267 T527 T524 punct ),syndrome
R269 T529 T534 prep In,investigated
R270 T530 T531 det this,work
R271 T531 T529 pobj work,In
R272 T532 T534 punct ",",investigated
R273 T533 T534 nsubj we,investigated
R274 T534 T534 ROOT investigated,investigated
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R277 T537 T534 dobj mechanisms,investigated
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R290 T550 T534 punct .,investigated
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R312 T572 T552 punct .,show
R314 T574 T573 pobj necroptosis,During

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T469 454-457 Protein denotes Akt
T468 422-432 Gene_expression denotes production
T467 417-421 Protein denotes TNFα
T466 331-341 Protein denotes Akt kinase
T465 233-243 Regulation denotes controlled
T464 233-243 Regulation denotes controlled
T463 304-308 Protein denotes RIP1
T462 263-302 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled
R218 T467 T468 themeOf TNFα,production

test3

Id Subject Object Predicate Lexical cue
T48 422-432 Gene_expression denotes production
T47 417-421 Protein denotes TNFα
T46 409-413 Regulation denotes role
T45 304-308 Protein denotes RIP1
T44 272-302 Protein denotes receptor interacting protein-1
T43 233-243 Regulation denotes controlled
T33 417-421 Protein denotes TNFα
T32 304-308 Protein denotes RIP1
T31 272-302 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role